mRNA_Ecto-sp13_S_contig10326.324.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A6H5KLM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM5_9PHAE) HSP 1 Score: 438 bits (1127), Expect = 2.000e-148 Identity = 219/266 (82.33%), Postives = 232/266 (87.22%), Query Frame = 3 Query: 309 SGFQEEEVSSGMRDGAGHNVHHRMVQGEGALSDADRARFGNMPPEKATAVRGAYPSPNPAGAA-MARTRRSNKGTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDELSRVAGADRMIVHMVFAETVEAGISNDAAPMAVERVESVYYLSSANAAESVTVDDLPETGLSWEVLP 1103
SGF EE+ SSGM GA HNVHHRMVQGEGALSDADRARFG+MPP+ ATAVR YPSPNPA +ARTR S +GTMGVLYWQLSDTWQGPSWSTIE+DGAWKVSHHMVRRAFSIVSI GTVVKRPRTAE S D V DDVE S FECH+TSDL+ +SGSYTVS YLWDDNCDPVASWGGTVGPMSPGSTT VFQAT +EL R AG DRMIVHMVF ETVEAG SNDA PMAV+R+ESVYYL SANA ESVTVDDLPETGLSWE+LP
Sbjct: 108 SGFLEEDASSGMLGGAEHNVHHRMVQGEGALSDADRARFGDMPPDTATAVRATYPSPNPAAXXXVARTRSSTRGTMGVLYWQLSDTWQGPSWSTIEHDGAWKVSHHMVRRAFSIVSIGGTVVKRPRTAEESGDGVGDDVEVSWFECHVTSDLQRGISGSYTVSAYLWDDNCDPVASWGGTVGPMSPGSTTIVFQATTEELRRAAGTDRMIVHMVFEETVEAGASNDAPPMAVQRLESVYYLPSANAVESVTVDDLPETGLSWELLP 373
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: D7FZJ5_ECTSI (Similar to Mannosidase, beta A, lysosomal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ5_ECTSI) HSP 1 Score: 306 bits (784), Expect = 2.070e-101 Identity = 154/185 (83.24%), Postives = 165/185 (89.19%), Query Frame = 3 Query: 378 MVQGEGALSDADRARFGNMPPEKATAVRGAYPSPNPAGAA-MARTRRSNKGTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDELSRVAGADR 929
+V+ EGALSDADRARFG+MPP+ AT VRGAYPSPNPA AA +ARTR S +GTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSH+MVRRAFSIVSIAGTVVKRPR AE S D V DDVEAS FEC++TSDLE V+GSYTVSVYLWDD+CDPVASW GTVGPMSPGSTT VFQ T DEL RVAGADR
Sbjct: 2 VVRREGALSDADRARFGDMPPDTATTVRGAYPSPNPAAAAAVARTRSSTRGTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHYMVRRAFSIVSIAGTVVKRPRAAEQSGDGVVDDVEASWFECNLTSDLEGVVAGSYTVSVYLWDDDCDPVASWEGTVGPMSPGSTTNVFQVTTDELRRVAGADR 186
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: D7FZJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ6_ECTSI) HSP 1 Score: 107 bits (267), Expect = 7.320e-24 Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 3 Query: 930 MIVHMVFAETVEAGISNDAAPMAVERVESVYYLSSANAAESVTVDDLPETGLSWEVLPA 1106
MIVHMVF ETVEAG SND AP AVERVESVYYLSSANA ESVTVDDLPETGLSWEVLPA
Sbjct: 1 MIVHMVFEETVEAGTSNDTAPTAVERVESVYYLSSANATESVTVDDLPETGLSWEVLPA 59
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A7S3C656_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C656_9EUKA) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-17 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 504 RTRRSNKGTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEAS-LFECHMTSDLEEQVSGSYTVSVYLWD-DNCDPVASWGGTVGPMSPGSTTKVFQATIDEL 905
R R S GTMG+LYWQL+D WQGPSWS+IEYDG+ K++H+ V+R ++ + ++ VEA+ H+TSDL G+ T+S++LW D P AS ++ GS+ +V+ + L
Sbjct: 18 RLRSSPAGTMGILYWQLNDVWQGPSWSSIEYDGSAKLTHYAVKRVYAPLLLSA-------------------VEANGTLAVHLTSDLTTPTHGNLTLSIHLWTADGPAPAASHPPLAASVAAGSSDRVWSGDLAPL 134
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A0M0J6X0_9EUKA (Beta-mannosidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J6X0_9EUKA) HSP 1 Score: 85.1 bits (209), Expect = 3.220e-14 Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 3 Query: 492 AAMARTRRSNKGTMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPG-STTKVFQATIDELSRVA 917
A R R TMGVLYWQL+D W GPSWSTIE+DG K+SHH V RAF+ V ++ T A T + H+TSDL +S + + +Y W D+ V W T ++P T + + ID+L A
Sbjct: 814 AQWRRQRSMPTNTMGVLYWQLNDIWPGPSWSTIEFDGTPKLSHHGVARAFAPVLVSAT-----EAAGTG-----------MLTVHLTSDLTRDLSDNLDLEIYRWADS-PAVVLWRVTHLAVAPALGTQEGYTVNIDDLLAAA 939
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A8J7NWP9_ATRSP (Beta-mannosidase (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NWP9_ATRSP) HSP 1 Score: 78.6 bits (192), Expect = 7.920e-13 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 3 Query: 513 RSNKG-TMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFS-IVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDEL 905
R KG TMG LYWQL+D WQGPSWS+IEY G WK+ H+ + F+ I+ +A +ED+ + + SDL++ VS S + VY W+ + +PV + + GS T V++ + EL
Sbjct: 51 REGKGHTMGALYWQLNDIWQGPSWSSIEYGGKWKMLHYFAQNFFAPILPVA----------------LEDE---EILLIYAVSDLQKDVSLSILIKVYQWN-SMEPVYVFASNSTEVQAGSATLVYKEPVKEL 163
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: W5N2I8_LEPOC (Beta-mannosidase n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5N2I8_LEPOC) HSP 1 Score: 77.4 bits (189), Expect = 1.020e-11 Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 3 Query: 513 RSNKG-TMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFS-IVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDEL 905
R KG TMG LYWQL+D WQGPSWS+IEY G WK+ H+ + F+ I+ +A +ED+ + + SDL++ VS S + VY W+ + +PV + + GS T ++ + EL
Sbjct: 667 REGKGHTMGALYWQLNDIWQGPSWSSIEYGGKWKMLHYFAQNFFAPILPVA----------------LEDE---EILLIYAVSDLQKDVSLSVVIKVYQWN-SMEPVYVFASNSTEVQAGSATLAYKEPVKEL 779
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A067R9Q3_ZOONE (Beta-mannosidase n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067R9Q3_ZOONE) HSP 1 Score: 76.3 bits (186), Expect = 2.410e-11 Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 3 Query: 528 TMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDELSRVAGADRMIVHMVF 950
TMG LYWQL+D WQG SW+++E+ G WK+ H+ RR F+ ++ +V A E H+ SD E TVSVY W+ + P+ T ++ S TKVF + + AG V F
Sbjct: 661 TMGALYWQLNDIWQGASWASLEFGGKWKMLHYFARRFFAPALVSPSVTS-----------------AGDLEIHLISDYLEDKETLLTVSVYKWN-SLTPINETSST-HTLNKASVTKVFSKNLLDHLNAAGCSEYAVKSCF 782
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: UPI0015609122 (beta-mannosidase isoform X1 n=7 Tax=Acipenseroidei TaxID=186622 RepID=UPI0015609122) HSP 1 Score: 75.1 bits (183), Expect = 5.730e-11 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 3 Query: 528 TMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDELSRVAG 920
TMG LYWQL+D WQGPSWS+IEY G WK+ H+ + F+ V G +D+E + + SDL+ ++ S V YLW + +PV G T + GS + +++ +++L + G
Sbjct: 669 TMGALYWQLNDIWQGPSWSSIEYGGKWKMLHYFAQNFFAPVLPVGF----------------EDIETLII--YGVSDLKNDLALSLLVKAYLWS-SMEPVCV-GVTDAVIKAGSASPIYKEPVNDLLKRCG 779
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Match: A0A444U3U9_ACIRT (Beta-mannosidase n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U3U9_ACIRT) HSP 1 Score: 75.1 bits (183), Expect = 6.970e-11 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 3 Query: 528 TMGVLYWQLSDTWQGPSWSTIEYDGAWKVSHHMVRRAFSIVSIAGTVVKRPRTAETSTDSVEDDVEASLFECHMTSDLEEQVSGSYTVSVYLWDDNCDPVASWGGTVGPMSPGSTTKVFQATIDELSRVAG 920
TMG LYWQL+D WQGPSWS+IEY G WK+ H+ + F+ V G +D+E + + SDL+ ++ S V YLW + +PV G T + GS + +++ +++L + G
Sbjct: 1973 TMGALYWQLNDIWQGPSWSSIEYGGKWKMLHYFAQNFFAPVLPVGF----------------EDIETLII--YGVSDLKNDLALSLLVKAYLWS-SMEPVCV-GVTDAVIKAGSASPIYKEPVNDLLKRCG 2083 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10326.324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10326.324.1 >prot_Ecto-sp13_S_contig10326.324.1 ID=prot_Ecto-sp13_S_contig10326.324.1|Name=mRNA_Ecto-sp13_S_contig10326.324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp MATAVVKPTASTTAMATAVVKPTNERDEMSKRTTTSTAAAAEAQRKKRTAback to top mRNA from alignment at Ecto-sp13_S_contig10326:565..5435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10326.324.1 ID=mRNA_Ecto-sp13_S_contig10326.324.1|Name=mRNA_Ecto-sp13_S_contig10326.324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4871bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10326:565..5435+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10326:565..5435+ >mRNA_Ecto-sp13_S_contig10326.324.1 ID=mRNA_Ecto-sp13_S_contig10326.324.1|Name=mRNA_Ecto-sp13_S_contig10326.324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10326:565..5435+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |