mRNA_Ecto-sp13_S_contig10323.322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI) HSP 1 Score: 327 bits (838), Expect = 1.780e-110 Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 1 Query: 19 QVNLDRETGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELACEE 537 +VNLDRETGALVDGSSFETLVL DNFPFVEE INLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVI+LGGDVLGPRGDGLVLRKNTLWVSDNVLEQI+EVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC+E Sbjct: 163 KVNLDRETGALVDGSSFETLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELACDE 335
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.120e-84 Identity = 132/171 (77.19%), Postives = 147/171 (85.96%), Query Frame = 1 Query: 19 QVNLDRETGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC 531 +VNLDRETGALVDG + TLVLSDN P +E N+NGIE TDDGSAL++VN ESQQ++AVDPDTG AT+I+LGG++L RGDGLVLRKNTLWV DN LEQI EVSL+ADLSCGS+A R LSNPLFD QTTAMRKGNSLYAVNAK VA ED+ATTAYEIVRVDRD GEL C Sbjct: 143 KVNLDRETGALVDGLAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRGDGLVLRKNTLWVVDNALEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELVC 313
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A6H5L833_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L833_9PHAE) HSP 1 Score: 224 bits (571), Expect = 5.350e-71 Identity = 124/164 (75.61%), Postives = 138/164 (84.15%), Query Frame = 1 Query: 52 VDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEV--SLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELACEE 537 V S +V++ F + I+ + +VTD+ S LIVVNSESQQVYAVDPDTGDATV++LGGDVLGPRGDGLVLRK+TL VSDNVLE+I+EV SLSADLSCGSVATRTLSNPLFDRQTTAM KGNS+YAVNA LDVAEE I TTAYEIVRV RDGGELACEE Sbjct: 98 VGTSMINDVVVTKTAAFYTDSIHPHINKVTDNDSPLIVVNSESQQVYAVDPDTGDATVVDLGGDVLGPRGDGLVLRKDTL-VSDNVLEKIYEVQVSLSADLSCGSVATRTLSNPLFDRQTTAMPKGNSMYAVNANLDVAEEVITTTAYEIVRVHRDGGELACEE 260
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A6H5JGY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY3_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.200e-50 Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1 Query: 124 NGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC 531 N + TDDGSALI+VNSESQQ++AVDPDTG AT+I+LGG+++ GDGLV SL+A+LSCGS+A R LSNPLFD QTTAMRKGNSLYAVNAK VA ED+ATTAYEIVRVDRD GELAC Sbjct: 44 NSSQATDDGSALIIVNSESQQLFAVDPDTGAATLIDLGGELIPGSGDGLV-------------------SLAANLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELAC 160
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: D7FN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN98_ECTSI) HSP 1 Score: 157 bits (397), Expect = 3.830e-45 Identity = 94/171 (54.97%), Postives = 102/171 (59.65%), Query Frame = 1 Query: 19 QVNLDRETGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC 531 +V+LD ETG LVD S+ ETLVLSDN P VE N+NGIEV LRKNTLWV +I EVSLSADLSCGSVA R LS+P+FD QTTAMRKGNSLYAVNAK VAEED+ T AYEIVRVDRD GELAC Sbjct: 99 KVDLDEETGELVDRSAVETLVLSDNVPVVEGAFNVNGIEV---------------------------------------------LRKNTLWVVHPSGGEILEVSLSADLSCGSVARRALSHPMFDTQTTAMRKGNSLYAVNAKFGVAEEDVDTAAYEIVRVDRDSGELAC 224
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI) HSP 1 Score: 147 bits (372), Expect = 3.320e-40 Identity = 92/187 (49.20%), Postives = 124/187 (66.31%), Query Frame = 1 Query: 13 FTQVNLDRETGALVDGSSF--ETLVLSDNFPF------VEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGD-VLGPRGDGLVLRKNTLWVSDNVL-----EQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC 531 F ++ LD E G L +G + E + LS +F F ++ +N NGI +TDD S+LI+VN +S +++AVDPDTG AT+I+LGGD +LG GDGLVLRKNTLWV N L + + EV LS DLSCG++ TR LSN F+ TA+RKGNS++ + V+ E+IATT Y++VRVDRD C Sbjct: 144 FYRIALD-EYGRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLILG--GDGLVLRKNTLWVCQNRLFGTPDQGVVEVLLSEDLSCGTI-TRRLSNEFFNDPATALRKGNSMWTTISMWAVSGEEIATTQYQLVRVDRDSAVSEC 326
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A6H5KWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ6_9PHAE) HSP 1 Score: 140 bits (352), Expect = 6.810e-39 Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 1 Query: 124 NGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGE 522 N + TDDGSALI+VNSESQQ++AVDPDTG AT+I L L + W + +I EV L+A+LSCGS+A R LSNPL D QTT+MRKGNSLYAVNA VA ED+ATTAY+IVRVD+D GE Sbjct: 44 NSSQATDDGSALIIVNSESQQLFAVDPDTGAATLIEAS----------LFLEEAMDWCLLDAA-RILEVPLAANLSCGSLAPRALSNPLLDTQTTSMRKGNSLYAVNANFGVAAEDVATTAYKIVRVDQDSGE 165
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A2D0NC79_9BACT (Superoxide dismutase n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0NC79_9BACT) HSP 1 Score: 117 bits (294), Expect = 1.010e-28 Identity = 73/158 (46.20%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 40 TGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYE--IVRVD 507 TG+ D + E + L +F FV N NGIE DG+ALIVVN + +Y VDP+TGDAT+I+L GD + GDG++L TL+V N L QI EV LS D GSV L++ F TT R G +LYAVNA+ DVA + E +VRVD Sbjct: 169 TGSPADAADVEAIELGGDFEFVPGNFNANGIEAIPDGTALIVVNGGTGDLYLVDPETGDATLIDLNGDSVN-NGDGILLVGKTLYVVQNFLNQIAEVKLSTDYLTGSVED-ILTDDDFRIPTTVTRHGGTLYAVNARFDVAPPQSSAEGIEFNVVRVD 324
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A3N5S5I5_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR) HSP 1 Score: 115 bits (289), Expect = 4.620e-28 Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 1 Query: 13 FTQVNLDRETGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDR 510 F +V+L R G L + E + L +F F+ + N NGI T +G ALI+VNS +Y VDP TGDA I+LGG + P GDGL+L+ TL+V N L QI + L +D + GS+ T+++ LF TT R GNSLYAVNA+ T YE+VRV R Sbjct: 154 FYRVSLARH-GGLPPAPTSEEVPLGGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSV-PNGDGLLLQGKTLYVVQNQLNQIAVIRLKSDFTSGSIVN-TITSELFRVPTTIARFGNSLYAVNARF--GTPPTPDTEYEVVRVPR 314
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Match: A0A399Z9Q0_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z9Q0_9CHLR) HSP 1 Score: 113 bits (283), Expect = 3.250e-27 Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 1 Query: 43 GALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVINLGGDVLGPRGDGLVLRKNTLWVSDNVLEQIFEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRD 513 G L D S+ L L +F FV + N NGI+ T DG +L++VNS ++Y VDP TG A++I+LGG + P GDG++L TL+V N L QI V+L A L+ G + +++P F TT GN+LYAVNA+ D T YEIVRV ++ Sbjct: 158 GQLPDPSAATALPLGGDFVFVPDAFNANGIDATPDGKSLVIVNSAEGKLYHVDPATGHASLIDLGGGAV-PNGDGILLDGKTLYVVQNQLNQIAVVALDAKLTEGEIVAH-ITDPAFRIPTTVAEFGNALYAVNARFDTPPTP--DTEYEIVRVTKE 310 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10323.322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10323.322.1 >prot_Ecto-sp13_S_contig10323.322.1 ID=prot_Ecto-sp13_S_contig10323.322.1|Name=mRNA_Ecto-sp13_S_contig10323.322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp MTGWFTQVNLDRETGALVDGSSFETLVLSDNFPFVEEEINLNGIEVTDDGback to top mRNA from alignment at Ecto-sp13_S_contig10323:3076..5634- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10323.322.1 ID=mRNA_Ecto-sp13_S_contig10323.322.1|Name=mRNA_Ecto-sp13_S_contig10323.322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10323:3076..5634- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10323:3076..5634- >mRNA_Ecto-sp13_S_contig10323.322.1 ID=mRNA_Ecto-sp13_S_contig10323.322.1|Name=mRNA_Ecto-sp13_S_contig10323.322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10323:3076..5634- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |