mRNA_Ecto-sp13_S_contig10320.320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.200e-75 Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1 Query: 454 PPLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPVGSGGAVQDQANVAGLKRRREQGEGVGVG 912
P L +L + AARALG+SLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVL+KDIVEQSGRP+G+GGA QDQANVAGLKRRREQGE VGVG
Sbjct: 11 PSLSSLAHGALGANNTAARALGVSLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGRPIGAGGAGQDQANVAGLKRRREQGEEVGVG 163
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI) HSP 1 Score: 240 bits (613), Expect = 3.420e-73 Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1 Query: 502 AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPVGSGGAVQDQANVAGLKRRR 885
AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTI SLKNALEKCDS+IERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRP+G+GGA QDQANVAGLKRRR
Sbjct: 60 AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIHSLKNALEKCDSDIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPIGAGGAGQDQANVAGLKRRR 187
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.970e-15 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 457 PLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKP 771
P+ L+E YH+ L AAR L +SL LK+ CRQYGI RWP+RQV S+ ++ L+ + + A+L+ + L K L+ K AS GL + N +F+++P
Sbjct: 14 PVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: L1JI00_GUITC (RWP-RK domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JI00_GUITC) HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8 Identity = 24/76 (31.58%), Postives = 52/76 (68.42%), Query Frame = 1 Query: 463 EALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLI 690
E L +++H+S+ +AA ALG+ ++ +K+ CR++GI RWP+R++ S+ T+ L++ + + + RA+L+ +++
Sbjct: 22 EELAQYFHISINEAAEALGMCMSAIKKICRRHGISRWPHRKLASVNKTVAMLQSKINTAEDDASRAALRSEAVNVL 97
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A453CMP2_AEGTS (RWP-RK domain-containing protein n=2 Tax=Triticeae TaxID=147389 RepID=A0A453CMP2_AEGTS) HSP 1 Score: 62.0 bits (149), Expect = 4.330e-8 Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
L + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I L+ + D E ER +K D +E+L K++ ++
Sbjct: 33 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 124
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: M8B5K3_AEGTA (RWP-RK domain-containing protein n=3 Tax=Triticinae TaxID=1648030 RepID=M8B5K3_AEGTA) HSP 1 Score: 62.0 bits (149), Expect = 4.410e-8 Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
L + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I L+ + D E ER +K D +E+L K++ ++
Sbjct: 34 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 125
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A7S0HHE9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHE9_9CRYP) HSP 1 Score: 61.6 bits (148), Expect = 5.600e-8 Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 469 LQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESL 687
L + H+ + A+ LGI + LK+ACRQYGI RWP+R+++SI + L+ AL CD + ER L+++ +L
Sbjct: 15 LVQLLHLPEKIVAKELGICVTSLKKACRQYGIYRWPHRKIKSIDKNLHKLEVALATCDKQEERVHLEEKKAAL 87
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: K3YEI3_SETIT (RWP-RK domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K3YEI3_SETIT) HSP 1 Score: 61.2 bits (147), Expect = 6.300e-8 Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 448 DSPPLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNAL 630
DS L + +++H+ +++A++AL I ++ LK CRQYGIPRWP+R+++S+ S I L+ L
Sbjct: 22 DSITLVNIAQYFHLPIKEASKALKIGVSALKTKCRQYGIPRWPHRKIKSLDSLIHDLEYVL 82
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A3B6B318_WHEAT (RWP-RK domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6B318_WHEAT) HSP 1 Score: 63.5 bits (153), Expect = 8.680e-8 Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
LE + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I L+ + D E ER +K D +E+L K++ ++
Sbjct: 207 LEDITQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEFVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 298
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A453CMI2_AEGTS (RWP-RK domain-containing protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453CMI2_AEGTS) HSP 1 Score: 62.0 bits (149), Expect = 8.940e-8 Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
L + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I L+ + D E ER +K D +E+L K++ ++
Sbjct: 76 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10320.320.1 >prot_Ecto-sp13_S_contig10320.320.1 ID=prot_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp MGDIGTSTSGLPWDGSSQQQLRPPSSSQQQQQQQQLQHMQQQQQRMQQQQback to top mRNA from alignment at Ecto-sp13_S_contig10320:1885..3972- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10320.320.1 ID=mRNA_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:1885..3972- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10320:1885..3972- >mRNA_Ecto-sp13_S_contig10320.320.1 ID=mRNA_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:1885..3972- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |