mRNA_Ecto-sp13_S_contig10318.316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Match: A0A6H5KU59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU59_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.730e-48 Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = -3 Query: 2 ADGATGKDEAETPPSLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRTNFDTAPFFACGDKESTTVSGPGGAGARGGAGMTGAPAELF 289
ADGATGKDEA+TPPSLQAD+FDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDR NFDTAP ACGDK STTVS PGGAGARGGAG+TGAP ELF
Sbjct: 587 ADGATGKDEAKTPPSLQADSFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRANFDTAPLLACGDKASTTVSRPGGAGARGGAGVTGAPTELF 682
BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Match: D7G1W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W4_ECTSI) HSP 1 Score: 169 bits (428), Expect = 1.440e-46 Identity = 87/94 (92.55%), Postives = 87/94 (92.55%), Query Frame = -3 Query: 2 ATGKDEAETPPSLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRTNFDTAPFFACGD-KESTTVSGPGGAGARGGAGMTGAPAELF 280
ATGKDEAETPP LQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDR NFDTAPFFACGD K STTVS PGGAGARGGAGMTGAP LF
Sbjct: 619 ATGKDEAETPPPLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRANFDTAPFFACGDGKASTTVSRPGGAGARGGAGMTGAPTGLF 712 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10318.316.1 >prot_Ecto-sp13_S_contig10318.316.1 ID=prot_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp RTAPRGRRSCQPRHEPQPRPVRTPSLTPCPRTRRRAPCRSLSGPRPWPYRback to top mRNA from alignment at Ecto-sp13_S_contig10318:5254..5639+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10318.316.1 ID=mRNA_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10318:5254..5639+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10318:5254..5639+ >mRNA_Ecto-sp13_S_contig10318.316.1 ID=mRNA_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10318:5254..5639+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |