mRNA_Ecto-sp13_S_contig10315.313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: D7G271_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G271_ECTSI) HSP 1 Score: 422 bits (1084), Expect = 1.690e-143 Identity = 246/309 (79.61%), Postives = 251/309 (81.23%), Query Frame = 1 Query: 1 MADVDMKDASEAATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 M DVDMKDAS AATAAGEKGEVAAVP+SIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLC+ALAKLLPDDCPDKAELTRLLAKLPSEA+AEP+ P TEAMEVDSEAAKKEA XXXXXXXEEAL SVVAA+LPEVEVYLSTLVLTTLLRHKANA RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKV QN Sbjct: 1 MTDVDMKDASAAATAAGEKGEVAAVPKSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCEALAKLLPDDCPDKAELTRLLAKLPSEAVAEPETPTTEAMEVDSEAAKKEAAAAATAEXXXXXXXEEALASVVAAKLPEVEVYLSTLVLTTLLRHKANA---------------------------------------------RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVSQN 264
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A835YND8_9STRA (Proteasome regulatory subunit C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND8_9STRA) HSP 1 Score: 251 bits (642), Expect = 2.860e-76 Identity = 157/300 (52.33%), Postives = 188/300 (62.67%), Query Frame = 1 Query: 37 ATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEA--MEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVA-VAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 A AA + AA P I + DI RN IV+ + + RLT RAI T IR RV VL +A+ +P+ P +A++ L LP+ A+ P +EA MEV+ E K A E +S+ A PEVE Y+ LVL +LR A+ +A LL R SFNRRTLD LA+K++FY SLA E +GR + R LL LHRTCCLRHDEIGQAT LNLLLR +LSQNLLDQAYKLASKTNFPE+CSNNQFCRYLYYMGRI ALQLDYTDA+ KL Q +RK P N Sbjct: 17 APAADDATPKAAAP--ITLADIKRNIGFIVRATESNQHRLTLRAIRNTTAIRTRVAPAVLKEAVMAYVPETHPARAQMLETLDALPAPAVEAAAEPPSEAASMEVEGEKEKDPAAPEGAETPEPAKEKWEEKLSLAA---PEVETYVCMLVLAVVLRSGGETGALLPLANALLARVTSFNRRTLDHLASKVLFYCSLAHERAGRASDMRAPLLALHRTCCLRHDEIGQATALNLLLRQMLSQNLLDQAYKLASKTNFPETCSNNQFCRYLYYMGRIGALQLDYTDAHAKLTQCARKAPAN 311
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S3HE23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE23_9STRA) HSP 1 Score: 208 bits (529), Expect = 3.260e-62 Identity = 116/234 (49.57%), Postives = 155/234 (66.24%), Query Frame = 1 Query: 232 KLLPDDCPDKAELTRLLAKLPSEAIAEPKPPA--TEAMEVDS-EAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQ 924 K +P DCP + + + K+P +AE K PA T++M+VD+ E A+K +V+ V LPEVEVY+ TL++TTLLRH+ NA+A A +ER +FNRR+LD +K FY SLA+E RL RP LL L+RT C+RHD++GQA LNLLLRN LS +L++QA+ L+ + FPES SNNQFCRYLYYMGRI A+QL+Y++AY +LM +SRK PQ Sbjct: 6 KYVPTDCPTYQVMLKAIEKVPETGVAESKKPADETDSMDVDANEGAEK-------------------IVAAVTTVLPEVEVYIFTLIVTTLLRHELNAEAAYAATAQIERIRTFNRRSLDIFTSKAYFYLSLAYEKINRLENIRPTLLALYRTSCVRHDDMGQAVLLNLLLRNYLSYHLVEQAHTLSLRAAFPESASNNQFCRYLYYMGRIQAVQLEYSEAYQRLMMASRKAPQ 220
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S2S1L3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1L3_9STRA) HSP 1 Score: 209 bits (533), Expect = 3.000e-60 Identity = 146/292 (50.00%), Postives = 179/292 (61.30%), Query Frame = 1 Query: 61 EVAAVPQSIK---VEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 EV A PQ +ED+ +I K V + RL +RA+ NT +R + +L A +LLPD +A L ++ LP PPA A++ + XXXXXXXXXXXXXX S++ PEVEVYLS LV+TTLLRH +A A L + NRR+LD L AK+ FY SLA E G L RP L+ HRT CL+HDE+GQAT LNLLLR+LL N ++QAYKL SKTNFPE SNNQFCRYLYY GRI A+QL+Y DAY KL+Q+ RK PQN Sbjct: 31 EVQAAPQERPRGGIEDVRHIVAMIEKAVATNQTRLISRALRHNTAVRTKATKVLLTKASDELLPDGHELQARLMEQISALPD-------PPADMALDGGAXXXXXXXXXXXXXXXXXXXXXXAKRTSII----PEVEVYLSLLVVTTLLRHNLVDEARTAAEALFLYVGTLNRRSLDPLRAKVYFYLSLAHEQKGSLAAIRPHLMAAHRTACLQHDEMGQATLLNLLLRDLLHHNQVEQAYKLVSKTNFPEKASNNQFCRYLYYTGRIAAIQLEYGDAYNKLLQAIRKAPQN 311
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A1V9ZW09_9STRA (26S proteasome non-ATPase regulatory subunit 3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW09_9STRA) HSP 1 Score: 198 bits (504), Expect = 2.120e-56 Identity = 123/279 (44.09%), Postives = 165/279 (59.14%), Query Frame = 1 Query: 94 EDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 +++ +N LI K V TR IRR + + L A+ ++L +D +A L + LA +P EA + D A + + ++A V + ++L EVEVYLS LV+ LL+ + DA +A ++ R FNRRTLD AA+++ Y++ AFE G + RP LL HRT CLR DEIGQAT LNLLLRN L +NL DQAYKL SKT FPE+ SNNQF RYLYY+G++HA+QL+Y+D+YTKLMQS RK PQN Sbjct: 6 KELKKNVGLIEKVVASSNKEKLTRVFRTTAHIRRELTSIELTRAIQEILAEDNEARATLLQFLALIPPEAE----------QDFDMNAGEDDPTVNEVE--------KDANVHMERSELIEVEVYLSLLVIALLLKSQLGQDAQRLADQVRGRCAQFNRRTLDIFAARVMTYFAYAFERYGDGITAIRPLLLEAHRTACLRCDEIGQATLLNLLLRNYLHENLYDQAYKLVSKTTFPEAVSNNQFVRYLYYVGKVHAVQLEYSDSYTKLMQSIRKAPQN 266
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A067CGI9_SAPPC (PCI domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CGI9_SAPPC) HSP 1 Score: 190 bits (482), Expect = 3.630e-53 Identity = 120/278 (43.17%), Postives = 164/278 (58.99%), Query Frame = 1 Query: 97 DIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEA-RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 ++ +N LI K V + R + IRR + L A+ ++L +D ++ L + + + +A A +VD A + + ++A V + ++L EVE YLS LV+ LL+ + A+A A A + +R + FNRRTLD AA+++ Y++ AFE G A RP LL HRT CLR DEIGQAT LNLLLRN L +NL +QAYKL SKT FPE+ SNNQF RYLYY+G+IHA+QL+YTD+Y KLMQS RK PQN Sbjct: 7 ELKKNVALIEKVVASNNKEKLARVFRTTSGIRRGLTPAELTRAVTEILAEDNEIRSSLLKFIGLVKPDA----------ADDVDMTAGEDDPAVGDVE--------KDASVHMERSELIEVETYLSLLVIALLLKSQLGAEAQACADLVRQRCMQFNRRTLDLFAARVMTYFAYAFERYGEGYTAIRPLLLTAHRTACLRCDEIGQATLLNLLLRNYLHENLYEQAYKLVSKTTFPEAVSNNQFVRYLYYVGKIHAVQLEYTDSYNKLMQSIRKAPQN 266
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A662X3H3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3H3_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.910e-51 Identity = 114/284 (40.14%), Postives = 160/284 (56.34%), Query Frame = 1 Query: 70 AVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKV 918 A +++ E++ R L+ V+ + +R + + +R+ + L A+ +LLPD K L LL+++ ++ K TE +E+ + +A +V + L EVEVYL VL L+++K A+A+ ++L R FNRRTLD AK+ YYS E G L R LL HRT CLR+DEIGQAT +NLLLRN L +NL +QAYK SKT FPE+ SNNQF RYLYY+G+I A+QL+YT++YTKLMQS RK Sbjct: 24 AAEETLVYEELKRTIVLLETVVKTNAKEKISRILRTTSKLRKTLSVGQLQQAVGQLLPDQNESKRALLALLSQISAKVAVTAK---TEDVEMTDATPEADASATTP-----------VVVVLPVVDLIEVEVYLFLYVLAALMKYKLTAEALDTVDKVLVRCQQFNRRTLDPFQAKVFSYYSSIHEQFGHDLSAIRNTLLAAHRTSCLRYDEIGQATLVNLLLRNYLQENLYEQAYKFVSKTTFPETVSNNQFVRYLYYVGKIQAVQLEYTESYTKLMQSIRKA 293
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S2FYH6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYH6_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.930e-51 Identity = 100/161 (62.11%), Postives = 111/161 (68.94%), Query Frame = 1 Query: 448 LPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASK-TNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 LPEV VYLS LV+ + + A A L+ + NRRTLD L +K FY SL E G LP R LL HRT CL HDE+GQAT LNLLLRNLLSQNL++QAYKL K TNFPE SNNQFCRYLYY GRI ALQL+Y DAYTKL+QS RK PQN Sbjct: 43 LPEVSVYLSLLVINAFIGAEMLDQAQAACEALVTLLETLNRRTLDPLTSKAYFYLSLVHEKKGTLPSIRTLLLSAHRTACLHHDEMGQATLLNLLLRNLLSQNLVEQAYKLGVKLTNFPEKASNNQFCRYLYYTGRISALQLEYGDAYTKLLQSLRKAPQN 203
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A6A4BAK4_9STRA (26S proteasome non-ATPase regulatory subunit 3 (Fragment) n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A4BAK4_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.970e-51 Identity = 120/287 (41.81%), Postives = 166/287 (57.84%), Query Frame = 1 Query: 70 AVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 A +++ E++ R L+ V+ + R + + +R+ + A L A+A+LLP K L LLAK+ EA A+ P AM ++A+ +E A +++ L EVE+YL VL L++ + +A+ A +++ R FNRRTLD L A+ YY+ E GR LP R LLG HRT CLR+DE GQAT +NLLLRN L+ NL +QAYK SKT FPE+ SNNQF RYLYY+G+I A+QL+YT++YTKLMQS RK P N Sbjct: 46 AAEEALVYEELKRTITLLETAVRTNAKEKIPRVLRATSKLRKTLSAAQLRLAVAQLLPSQNASKPALLALLAKI--EAKAQALKPQDVAM---TDASSEEEAPAA------------ATLALPVVDLIEVEIYLFLYVLAALVKFRLAQEALDTADKVVARCQQFNRRTLDLLQARAFTYYATIHEQFGRDLPAIRNTLLGAHRTACLRYDEAGQATLINLLLRNYLNDNLYEQAYKFVSKTTFPETVSNNQFVRYLYYVGKIQAVQLEYTESYTKLMQSIRKTPAN 315
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: K3X7P1_GLOUD (PCI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7P1_GLOUD) HSP 1 Score: 186 bits (471), Expect = 2.970e-51 Identity = 117/292 (40.07%), Postives = 166/292 (56.85%), Query Frame = 1 Query: 55 KGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927 K EVAA +++ E++ R L+ V+ + +R + + +R+ + L A+ ++LP+ KA L LL K+ ++ A VD+E + +V + L EVEVY S VL L++++ DA+ ++L R+ FNRRTLD+ AK+ YY+ E G LP R LL HRT CLR+DEIGQAT +NLLLRN L +NL +QAYK +KT FPE+ SNNQF RYL+Y+G+I A+QL+YT++YTKLMQS RK PQN Sbjct: 20 KSEVAA-EEALVYEELKRMILLLETVVKTNAKEKISRILRNTSKLRKTLSIPQLIQAVNQVLPEKNESKALLLSLLEKIGTKVDAT----------VDTEMTDVSESTPEGDAPATTDNAAKEVVVLPVVDLIEVEVYFSLYVLAALVKYQLADDALQTVQKVLARSEQFNRRTLDAFQAKLYTYYASIHEQFGHDLPAIRSTLLAAHRTACLRYDEIGQATLVNLLLRNYLHENLYEQAYKFVTKTTFPENASNNQFVRYLFYVGKIQAVQLEYTESYTKLMQSIRKAPQN 300 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10315.313.1 >prot_Ecto-sp13_S_contig10315.313.1 ID=prot_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp MADVDMKDASEAATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTAback to top mRNA from alignment at Ecto-sp13_S_contig10315:2..4624- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10315.313.1 ID=mRNA_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10315:2..4624- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10315:2..4624- >mRNA_Ecto-sp13_S_contig10315.313.1 ID=mRNA_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10315:2..4624- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |