Homology
BLAST of mRNA_Ecto-sp13_S_contig10309.312.1 vs. uniprot
Match:
A0A6H5KIL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL3_9PHAE)
HSP 1 Score: 460 bits (1184), Expect = 2.370e-147
Identity = 336/448 (75.00%), Postives = 346/448 (77.23%), Query Frame = 1
Query: 775 MDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLRRQAPGNDAGSGGA----------SEEKEGAQQGAGGKREREDLKHYEEDKQARRSASPQRLPSRLVPTPPSA--VSLLPLGSGRSVATSG-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESRDLGQVGSSVGCAXXXXXXXXXXXXXXXXXXXXXXQRRQPRRPE-ANGTAPLSTGAAKSRSSRVGSVAADGGVSGEGREAETKSGAGKRTTGPADDENVTNKRXXXXXXXXGNHRVLLRGGAGASAACAAVGRDSNSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSEELADACVGHFLVTPPAAQDTEDKEGXXXXXXXXXXXXXXXXXXXX--PPVVGTSPSQAVKPAGLPDSVAAKV 2070
MDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLL+RQAP NDAGSGGA SEE EGAQQGAG +RER+D K YE+DKQARRSASPQRLPSRL+ TPPSA VSLLP GSG SV SG G XXXXXXXXXXXXXXXXXXXXXXXX SRDL QVGSSVGCA XXXXXXXXXXXXXXXX AN TAPL+ GAAK SRV SVAA VSGEGR AETK G+GKRTTGPADD N TNKR GNHRVLLR GAG SAA AAVGR SNSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSEELADACVGHFL+ PPAAQDTE +EG XXXXXXX PPVVGTSPSQAVKPA +PDSVAAKV
Sbjct: 1 MDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLQRQAPSNDAGSGGADAACYGSRGGSEENEGAQQGAGRERERKDSKRYEDDKQARRSASPQRLPSRLLRTPPSASAVSLLPSGSGPSVVASGVGRRGKDKKKSQRELGKGGEXXXXXXXXXXXXXXXXXXXXXXXXXSRDLAQVGSSVGCADNNAGGXXXXXXXXXXXXXXXXXXXXXXXXXXANRTAPLNAGAAKXXXSRVVSVAASDSVSGEGRGAETKLGSGKRTTGPADDANETNKRRRTGGAVDGNHRVLLRVGAGVSAAGAAVGRGSNSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSEELADACVGHFLIIPPAAQDTEGQEGEGHAAQLPSPPXXXXXXXPVQLPPVVGTSPSQAVKPARIPDSVAAKV 448
BLAST of mRNA_Ecto-sp13_S_contig10309.312.1 vs. uniprot
Match:
D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)
HSP 1 Score: 421 bits (1081), Expect = 4.210e-133
Identity = 372/680 (54.71%), Postives = 382/680 (56.18%), Query Frame = 1
Query: 37 LGRYVSLQEVKDAVRLLRRSGAGMDRQALLDGCLDVMGESGNGPFSSLPSTDGSGTVAMAPPKDCRTTAADGGGRGGSGSANARPNEGGEASPASSSSXIXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKTPTGDRRPPTRKRGRPKSTGSGRLEGDGGGVRGRLGHEEYVGVAASKTPPILKTEAKPVAKGGSDXXXXXXXXXXXXXXXXXX--AGVNPRCLSKRRARQRCGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLRRQAPGNDAGSGGASEEKEGAQQGAGGKREREDLKHYEEDKQARRSASPQRLPSRLVPTPPSAVSLLPLGSGRSVATSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESRDLGQVGSSVGCAXXXXXXXXXXXXXXXXXXXXXXQRRQPRRPEANGTAPLSTGAAKSRSSRVGSVAADGGVSGEGREAETKSGAGKRTTGPADDENVTNKRXXXXXXXXGNHRVLLRGGAGASAACAAVGRDSNSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSEELADACVGHFLVTPPAAQDTEDKEGXXXXXXXXXXXXXXXXXXXXPPVVGTSPSQAVKPAGLPDSVAAKV 2070
LGRYVSLQEVKDAVRLLRRSGAGMDRQAL+DGCL E+KP AKGG XXXXXXXXXXXXXXXXXX AGV PR LSKR ARQ CGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLR QAP NDAGSG GSG + S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q +R EANGTAPL+ GAAKSRSSR GSVA G VSGEGR AETKSGAGKRTTGPADDEN TNKRXXXXXXXXGNHRVLLRGGAGASAA AAVG +NSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTS+ELADACVGHFL+TPPAAQ TED+EG PPVVGTSPSQAVKPAG+PDSVAAKV
Sbjct: 17 LGRYVSLQEVKDAVRLLRRSGAGMDRQALVDGCL------------------------------------------------------------------------------------------------------------------------------------------------------RESKPAAKGGXXXXXXXXXXXXXXXXXXXXXXAGVGPRGLSKRGARQPCGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLRLQAPSNDAGSG---------------------------------------------------------GSGAACYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------QHQRQEANGTAPLNAGAAKSRSSRAGSVAGGGSVSGEGRGAETKSGAGKRTTGPADDENETNKRXXXXXXXXGNHRVLLRGGAGASAAGAAVG-STNSPAPRKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSKELADACVGHFLITPPAAQHTEDQEGEGHAAQLPLPPSSPPAPTPLPPVVGTSPSQAVKPAGIPDSVAAKV 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10309.312.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.37e-147 / Id = 75.00 Expect = 4.21e-133 / Id = 54.71 Sequence A0A6H5KIL3_9PHAE D8LT08_ECTSI
Match Name E-value Identity Description
A0A6H5KIL3_9PHAE 2.370e-147 75.00 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LT08_ECTSI 4.210e-133 54.71 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 2070 Hectar predicted targeting category other localisation Exons 7 Cds size 2070
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462522.5090368-CDS-Ecto-sp13_S_contig10309:208..248 1681462522.5090368-CDS-Ecto-sp13_S_contig10309:208..248 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 209..248 + 1681462522.518699-CDS-Ecto-sp13_S_contig10309:826..924 1681462522.518699-CDS-Ecto-sp13_S_contig10309:826..924 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 827..924 + 1681462522.5292606-CDS-Ecto-sp13_S_contig10309:1159..1780 1681462522.5292606-CDS-Ecto-sp13_S_contig10309:1159..1780 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 1160..1780 + 1681462522.5425344-CDS-Ecto-sp13_S_contig10309:2455..2549 1681462522.5425344-CDS-Ecto-sp13_S_contig10309:2455..2549 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 2456..2549 + 1681462522.5531719-CDS-Ecto-sp13_S_contig10309:2718..3611 1681462522.5531719-CDS-Ecto-sp13_S_contig10309:2718..3611 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 2719..3611 + 1681462522.562364-CDS-Ecto-sp13_S_contig10309:4184..4278 1681462522.562364-CDS-Ecto-sp13_S_contig10309:4184..4278 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 4185..4278 + 1681462522.5734303-CDS-Ecto-sp13_S_contig10309:4577..4807 1681462522.5734303-CDS-Ecto-sp13_S_contig10309:4577..4807 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10309 4578..4807 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10309.312.1
>prot_Ecto-sp13_S_contig10309.312.1 ID=prot_Ecto-sp13_S_contig10309.312.1|Name=mRNA_Ecto-sp13_S_contig10309.312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=690bp
QIPCLSADLNTTLGRYVSLQEVKDAVRLLRRSGAGMDRQALLDGCLDVMG back to top mRNA from alignment at Ecto-sp13_S_contig10309:209..4807+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10309.312.1 ID=mRNA_Ecto-sp13_S_contig10309.312.1|Name=mRNA_Ecto-sp13_S_contig10309.312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10309:209..4807+ (Ectocarpus species13 EcNAP12_S_4_19m)CAGATTCCCTGCCTGTCGGCTGACCTCAACACTACTCTCG GTGAGTTCTA
GGCCATCCAACCCCGCTTCTTGTGTTGACGCTGCGGCCTCTGCAGGAATT
GAGAATTAGGCCGCCTTCGGGCGATTGACGAGTTTTTTCAGGAAATAGAA
CAAGAATAGAACCGAGAGGGGGGATGCAGACCCTATTCCCTAACCCTAGC
CCTGAACCCAACTTTATCCGATTGCATGCCTTATCCAACGTGTTTACATG
ACAAGAAAAGACCTGCAAAGGCTACTCTGTGAAAGTTCGGTGTTGAAGTA
TTGTCATGGTGGTTGGTACATGATGATGGTGCAGCAGTGTGATGGGTTGT
GGGACGAGTACTTCTTTCATGCGGCGGCCGCGGACCTTGGCGGTACGTTT
GGATTATGCTGATGGACGACACCATTTTGTGTCGATTGATGATAACAACA
GCACCAAGTGACGCTGATCGTAGCGCCTTTCCCTCTTTAAAGGATCGTGT
TCGTCACCCTAGGTGAGCCCAGTGAAGGAGTCCTTCCGGGAGCGTACTTT
GCGTTGTGCTGGCTGCAGCATCACACTGGTCTGTTTTGTTTTTTTTCATT
TTTTGGCGCGAACTGCAGGACGTTACGTGAGCCTGCAGGAGGTGAAGGAC
GCCGTACGCTTACTCCGCCGAAGCGGGGCAGGGATGGACAGGCAGGCGCT
TCTGGACGGCTGCTTG GTGCGTTAAAGTTTGCGGTTGAGGTGTTGGCGAT
GGCGGCCATATGTCATGTGTTATCGACCTGCAGTCTTCGTCATCTCAAGT
AGGGTTGGCACCTTTGGAGACCTTTGAAGGACGCTGGAGTCCATGTGTGC
TGCAGATCATGTTGAGCGGTCATCGAATCAGGCATAGCAACTTTACACAC
CTCTTGTTTCCAACCCCTCCCCCGCCCCCCCGGCAACTCATGGTCCGACA
GGACGTGATGGGCGAGAGCGGAAACGGACCCTTTTCATCGCTTCCATCTA
CCGACGGGTCCGGCACCGTTGCGATGGCACCCCCCAAGGATTGCCGTACG
ACCGCGGCCGACGGGGGCGGCAGGGGCGGCAGCGGCAGCGCGAACGCAAG
GCCTAATGAAGGCGGTGAAGCATCACCCGCCAGCAGCAGCAGCAGCATCG
CTTCGTCTCCCGCGTCGGCAGGAACGAGGGCGGCGGAGGCGGCGGCGGCG
GCAGAAGCAGCAGCTACTGCCGCGGACAGCAGCAGCACAAAGACACCGAC
GGGCGACCGCCGCCCGCCCACAAGAAAGCGGGGAAGGCCCAAAAGTACAG
GGTCCGGTCGGCTCGAAGGCGACGGCGGCGGCGTACGCGGCCGGCTCGGG
CATGAGGAGTACGTGGGTGTCGCGGCCTCGAAAACGCCTCCGATTTTGAA
GACAGAGGCCAAGCCGGTGGCGAAGGGGGGGTCAGACAGCAGCAGGAGAC
GGACGAGCGCTGGAGGGGGCGGCGGCGGTGGCGGTGCCGCTGCTGGCGTT
AACCCTCGTTGCTTGTCGAAGCGCCGAGCCCGGCAGCGGTGCGGCCTCAT
CCCCGAGAGCGTGATCGCGAAG GTGACCACGCGTGGAAAATAATAGCCCA
AGAACATTGTACCGTACCGTATCTCGGTTACGTGAGATACCACACACCCC
CTGAACCGACCGATTGTGGATAAGCTCGATTACTCTGCAGCTCTCGGTTA
CGTGAGATACCACACACCCCCTGAACCGACCGATTGTGGATAAGCTCGAT
TACTCTGCAGCACTGCTAAATAGCGGTGACTGTGCCGAGAAATTCGGACG
TTGGGACTGTGTCTCCCGTAGAACATTTCGATAACGTGTCGTGTGTGGTA
TCCTCGTCATCGTGGAGTAGTCGAGCTACGAAAAATTGGCCCAGGGGGTG
TGAACCCACATATATAACCTGGGGTGATACGTAGCTTGCGTTTGGCCACA
CGACTTGTGCACGGCGCGCCGAGCGAGAGCTGTGCCGCTAGGGAAGGGTA
CAAAGAATACCTCGTGCTCCCCGAGACTTTTGCTTTGTGTCGCTCTAGGC
GTTTCTATTTTTCTGTTACACTTGGTCCTAGTGGTTGACTGTGGAGAGGG
ACAAATAGGTAGGGTAGGGACGGGAGAACGGGCTAAATCGTTGTTGATTG
CTGGTGGTTTTGGTTGGTGCTCAAGTTGACCCGGGTGATGCCCCCCCGCC
CCTTCTCCACCCTACGTTTCATGTGCTGCGTGTCTCTGTCGTGCCAGGTG
CCCCGACTGCTGATGGACTTGGAGAAGTTTGTTGGCTACCGCGTGTTCGC
AGACGACGCTAAGGCCCGCTGCCGGGAGCTAGATCGCTGCG GTACGTACT
ACGAACGCGCGTCTAAGTACCTACCCCGATAGAAAAGCGTTGATAAAGAT
ACCCCGCTACATCATAGTTTGAGGGGAAATAAAGGGGCTGCTGGACGGTG
TTGATTTATTTTTAACGGACCCGGTGTCGTCGTTGTTTTTGTTGTTGACG
TCCATGGCAGGCGAGGGTTTGAACCAGCAGGAGCTGTGCGACGCCCTGGT
TTCCCTGCTGCGGCGGCAAGCCCCAGGCAATGACGCCGGCAGCGGCGGCG
CCAGCGAAGAGAAGGAGGGAGCCCAGCAGGGCGCGGGGGGGAAGCGGGAG
CGGGAGGATCTGAAGCATTACGAGGAAGACAAGCAGGCGAGGAGATCCGC
GTCCCCGCAACGATTGCCATCACGCTTGGTACCGACGCCGCCATCGGCTG
TGTCGCTGCTCCCCTTAGGATCGGGGAGGTCGGTAGCGACGAGCGGTGGC
GGCGGCCGCGGGAAGGCCAAGAAGAAGAGCCAGAAGGAGTTTGGCGGGAG
AGGGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAAAAGGAGGAGGAAGAGAAGGAGGAATCACGAGATTTGGGTCAAGTG
GGGTCCTCAGTTGGGTGTGCGGACGGTAACGCCGGCGGCAGCTGCGGCGG
TGGTGCACCTCCGACACCATCACCGTCGCCTCCGCCACAGCGGCGCCAGC
CCCGGCGGCCGGAGGCCAACGGTACAGCGCCCCTGAGCACTGGCGCAGCC
AAGTCGAGATCGTCGCGGGTGGGCAGCGTTGCCGCCGACGGCGGCGTCTC
GGGGGAAGGGCGGGAGGCGGAGACAAAGTCTGGCGCAGGGAAGAGAACAA
CGGGGCCGGCGGATGACGAGAATGTAACGAACAAGCGAAGGAGAACAGGG
GGCGCTGACGATGGGAACCACAGGGTGCTGTTAAGGGGTGGTGCCGGTGC
TAGTGCCGCTTGCGCTGCTGTGGGGAGGGACAGCAACAGCCCTGCCCCGA
GAAAGAGGCCTCGTCGATCGTCCGGTATCTTCCCCGAGAGCGTTATCTCG
AAG GTGAGGTGGCTTCATTTCATGCCAACAGCTGCGTACTGCTGTCCATG
TCGGTCTGTGGAAGTGCTTTTTTGTTCGCGTTTGTTTTTCTCTTAATTGG
ACCAAAGGTCTCTCTCTGGCTCTCTCTCTCTTGATCTTCCTCTCTCTCTC
TCCCTCTCTCCCTCGAGAGGGGGGGTTTGAACTGCCGCCCCCCGGCAATC
TCTTTTATTTGGTCGTCGGGTCTTATTTTGGTCGCCAAATAGTGTCTGCT
TTTCTCGACCCTATCCTTCCGCTATTCTCGCCTCTGAACATTTATTGGCC
CGCGCTGCTTTTTTCGTCCCGCCCCCTTCCTCCGCATCGCGATGCCATTT
ATAATTGTCAAACCTCCTCTTGTTCTCGCCCTTACCCTCGCGCACATGCC
GCCTCCCGATCGTTTGGAGGCACACCACGAACGCGTTTTCTATGGAATTT
CCAAGAAGCTCACAAGTGCTACGGGGACCTACGGCCCTCATCCCATGTTT
GTAGCTTTACTTCTAAGGTGTCTTGTGTGTTTCCGACCAAAGCCCCCGTG
ACCATCGTCTCTGTCGTCGTCGTCAGGTGCCGCGCCTGGCGCTGGACTTG
TCTGCGAGGCTGGGGTGCGGCGTGACCACCGAGCAGGCGAAGGCGGCCTG
TCGGGAGCTGGACAGATGCG GTGAGGGCGGAGTGTCTTTTTCTGTTGTTG
GTGCCGTTGCTGCTGCTATTATTGTTGCTGCTGCTATTGTTGTTGCTGCT
GCTCTCTTGCTGATGCTACTTCTTTTGTTGCTCATTATGTGTCGTTGCTG
CTGCTATTTGCAGCGGTGGTTTTGAAGTTGTCGCTGCTCCTGCTCTTGCT
GCTGCCGCTGCTGCTCTTTTGGTCGTTGCTCATGCTTCGTCGTTACTACT
GCTGCTGCTGCTCTGCTGATGTTGCTGCTGTCGACGTTCTTACTCCATTT
CTGCACTTTCTTGCAACAGGAGATCGCCTGACCTCAGAAGAGCTCGCGGA
CGCCTGCGTGGGCCATTTCCTGGTTACACCCCCCGCGGCGCAAGACACCG
AGGACAAGGAAGGAGAAGGGCAGGCAGCGCAATTACCATCGCCGCCGCCA
TCACCGCCGGCGCCGGCGCCACTGCCGCCCGTCGTTGGAACCAGCCCGAG
TCAAGCCGTCAAACCCGCGGGACTTCCGGACAGCGTCGCCGCGAAGGTG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10309:209..4807+
>mRNA_Ecto-sp13_S_contig10309.312.1 ID=mRNA_Ecto-sp13_S_contig10309.312.1|Name=mRNA_Ecto-sp13_S_contig10309.312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2070bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10309:209..4807+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top