mRNA_Ecto-sp13_S_contig10304.309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 415 bits (1067), Expect = 1.570e-141 Identity = 326/354 (92.09%), Postives = 335/354 (94.63%), Query Frame = 1 Query: 1 RWPQDMSEWLAAPLESVAARGEEGLARKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDEEDDHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDDERARSLLARAPADRAWRRRGLIVLCHAHPDRLQLGGDLAGLVARVLGLEEVGVFNTIVLYL 1062 R P +MSEWLAAPLES ARG+EGLA+KLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHD+EDD+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRL EFDMS LD AASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKAN ANAIDVLVGAGADIQAR+MSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKVGQRRGSVQ VGLLLRWGADETIV KQGKT AD IGT+RFP TEPGDDERARSLL RAPADRAWRRRGL+VLCHA+PDRLQLGGDLAGLV RVLGLEEVGVF TIVLYL Sbjct: 34 RCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDDEDDYGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLNEFDMSFLDFAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQLGGDLAGLVDRVLGLEEVGVFRTIVLYL 387
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 298 bits (763), Expect = 1.800e-95 Identity = 276/355 (77.75%), Postives = 290/355 (81.69%), Query Frame = 1 Query: 1 RWPQDMSEWLAAPLESVAARGEEGLARKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDEEDDHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAAAFG-TALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDDERARSLLARAPADRAWRRRGLIVLCHAHPDRLQLGGDLAGLVARVLGLEEVGVFNTIVLYL 1062 RWP +MSEWLAAPLES G EGLARKLVQAGAK+GGVALHE VRRGHIA+AELLLENGASVHD+EDD+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEF++S LD AA S VEI+RMLIDHGMEV+ A + G TAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A VGQR GS Q V LLLRWGADETIVSKQG+T ADSIGT+R RT+P DDERARSLLARAPADRAWRRRGL+VLC AHPDRLQLGGDLAGLVA V GLEEVGVF TIVLYL Sbjct: 37 RWPHEMSEWLAAPLESAVVSGHEGLARKLVQAGAKVGGVALHETVRRGHIAMAELLLENGASVHDDEDDYGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFEVSALDFAALSDHVEIVRMLIDHGMEVHRANSDGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGQRHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQLGGDLAGLVAGVGGLEEVGVFRTIVLYL 391
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.190e-18 Identity = 183/390 (46.92%), Postives = 217/390 (55.64%), Query Frame = 1 Query: 10 QDMSEWLAAPLESVAARGEEGLARKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDEEDDHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDD-ERARSLLARAPADRAWRRRGLIVLCHAHPDRL--------------------------------------QLGGDLAGLVARVLGLEEVGVFNTIVLYL 1062 Q ++E L A LE AA+G + LA++LV+AGA+IG ALH AV GH I LLE+ AS+ + D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+R T+F AA VEILR +I+HG +V+ A XXXXXXXXXXXXXXXXXXXXXXXXXX A + R+G+ + V LLR GADETI + QG D IG +D ER R LLA APADRAWRRRG +++C A PDR+ GG+ A +V++V+ L+E G+F TIV YL Sbjct: 12 QQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGD-ALHRAVDGGHREIVSDLLESEASLAATDMDGRTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRSTQFKCPATHAAALEGHVEILRAIIEHGADVDAVDAQQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSLLTPLMKAGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.250e-17 Identity = 70/192 (36.46%), Postives = 89/192 (46.35%), Query Frame = 1 Query: 394 RLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEP---GDDERARSLLARAPADRAWRRRGLIVLCHA 960 R+ S+LD AA D +LR ++ HG++VN T+LH AA N AIDVLV AGA ++ D P A + G R+G V +LLR GADET ++ G+T A+ +G P D ER R LL APADRAWRRRGL+VLC A Sbjct: 151 RIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAG-RQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRA 341
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 4.780e-17 Identity = 69/192 (35.94%), Postives = 88/192 (45.83%), Query Frame = 1 Query: 394 RLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAAAFGTALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEP---GDDERARSLLARAPADRAWRRRGLIVLCHA 960 R+ S+LDLAA D +LR ++ HG++VN T+LH AA N AIDVLV AGA ++ D P A + G R+G V +LLR GADET ++ G+T A+ +G P D ER R LL AP DRAWRRRG +VLC A Sbjct: 102 RIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAG-RQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRA 292
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 9.880e-15 Identity = 74/194 (38.14%), Postives = 92/194 (47.42%), Query Frame = 1 Query: 475 HGMEVNLAAAFG-TALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDD-ERARSLLARAPADRAWRRRGLIVLCHAH--PDRLQLG-----GDLAGLVARVLGLEE 1029 HG +VN G TAL A+ + A AIDVL AGA+I+A+ +GS PL AAK G G+ + V LLLR GADET VS+ G T AD + + +D +R R LLARAPADRAWRRRG ++L AH R+Q G AG+ R EE Sbjct: 546 HGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQ-ANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSP-GTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEE 737
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 4.280e-14 Identity = 178/348 (51.15%), Postives = 200/348 (57.47%), Query Frame = 1 Query: 7 PQDMSEWLAAPLESVAARGEEGLARKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVH--DEEDDHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLTEFDMSLLDLAASSQDVEILRMLIDHGMEVNLAA-AFGTALHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDD------ERARSLLARAPADRAWRRRGLIVLCHAHPDRLQL----GGDLAGLVAR 1011 P++ + WL PLE G+ LA LV+ GA+ G A++EA+ G + LLL+NGASV D E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL S VN F ALH A N A+ VL+ AGADIQ S S PL XXXXXXXXXXXXXXXXXXXXXXAA R+GS + V LLLR GADET + G+ AD +G E GD LLA APADRAWRRRGL+VLC A R +L GGD G ++R Sbjct: 26 PEEWAAWLKVPLEIAVRTGDRDLASMLVRGGAE-AGTAVNEAIACGDTEVMSLLLDNGASVSATDAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREWYDGAHRSXXXXXXXXXXXXXXXXXXXXXXXVNAGDNLFVPALHLAVAFNKVKAVKVLLEAGADIQGHSFSRSTPLHLASFKQPSVESAVXXXXXXXXXXXXXXXXXXXXXXAASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCM----ELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSR 368
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 8.890e-13 Identity = 67/194 (34.54%), Postives = 80/194 (41.24%), Query Frame = 1 Query: 427 LAASSQDVEILRMLIDHGMEVNLAAAFGTA--LHWAAKANSANAIDVLVGAGADIQARDMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDD---ERARSLLARAPADRAWRRRGLIVLCHAHPDRLQLGGDL 993 LA V I+ L+ G +VN H AA N+A A+ L AG I+ R G PL A R G A LLLRWGADET V KT+ S+ T R R ER LLARAP DRAWRRRG +V C +HPDR+QL ++ Sbjct: 64 LAVKRNHVAIINALLAEGADVNFLTTRRPVPLAHIAALHNNAAAMPALFKAGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSAC----REGHHDAADLLLRWGADETAVDSDEKTIV-SMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLAVEI 252
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 2.360e-12 Identity = 68/208 (32.69%), Postives = 97/208 (46.63%), Query Frame = 1 Query: 406 FDMSLLDLAASSQDVEILRMLIDHGMEVNLAA--AFG-TALHWAAKANSANAIDVLVGAGADIQARDMSGS----RPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKVGQRRGSVQAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDDERARSL--LARAPADRAWRRRGLIVLCHAHPDRLQLGGDLAGL 1002 F + +++A V +++ ++HG++ + A A G TALH AA N A A++VL+ AGAD + GS PL A + Q G ++ V LLLRWGA ET V+K G T A+ R + +ERA +L LARAPADRAWRRRG +V+ A + ++ GL Sbjct: 166 FPNAEINVATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHE--QTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPD-ATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIAAQRRGL 370
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 3.350e-11 Identity = 52/119 (43.70%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 748 RGSV--QAVGLLLRWGADETIVSKQGKTVADSIGTQRFPRTEPGDDERARSLLARAPADRAWRRRGLIVLCHAH------------PDRLQLGGDLAGLVARVLGLEEVGVFNTIVLYL 1062 RGS V LLLRWGADET+ ++GKT AD +G R +P ER R LL AP DRAWRRRG +V+ AH P + GG + L VL L E VF +V +L Sbjct: 355 RGSCVPSVVDLLLRWGADETMKDERGKTPADYLG--RIRNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLRAHTLAAGEPVDIPEPKKRGGGGGVCPL-KFVLSLNEDAVFREVVAFL 470 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10304.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10304.309.1 >prot_Ecto-sp13_S_contig10304.309.1 ID=prot_Ecto-sp13_S_contig10304.309.1|Name=mRNA_Ecto-sp13_S_contig10304.309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp MSEWLAAPLESVAARGEEGLARKLVQAGAKIGGVALHEAVRRGHIAIAELback to top mRNA from alignment at Ecto-sp13_S_contig10304:4028..5092- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10304.309.1 ID=mRNA_Ecto-sp13_S_contig10304.309.1|Name=mRNA_Ecto-sp13_S_contig10304.309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10304:4028..5092- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10304:4028..5092- >mRNA_Ecto-sp13_S_contig10304.309.1 ID=mRNA_Ecto-sp13_S_contig10304.309.1|Name=mRNA_Ecto-sp13_S_contig10304.309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10304:4028..5092- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |