mRNA_Ecto-sp13_S_contig10299.301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.790e-71 Identity = 149/192 (77.60%), Postives = 151/192 (78.65%), Query Frame = 3 Query: 36 PRPRGSQVFMLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGXXXXXXXXXXXXXXXXGIGEIGLRSSPGSHSPIHPRRDAGGGSSGYPGLVPAEAESAPPGVVEMEPAPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 611
PRPRGSQVFMLSSAGQDKKAHVAFAGTS+NVHP VDTGTGGIG GIGE+GLRSS GSHSPIHPRRD GGGS GYPGLVPAEAESAPPGVVEMEPAPPL XXXXXXXXXX XX X XXXXXX RRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGA GPWMS
Sbjct: 387 PRPRGSQVFMLSSAGQDKKAHVAFAGTSSNVHPPVDTGTGGIGGAAPSFPVYRGTAGSSGIGEMGLRSSSGSHSPIHPRRDGGGGS-GYPGLVPAEAESAPPGVVEMEPAPPLPVAGXXXXXXXXXXVRKKRAKXXSSKSXRDGGXXXXXXXRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAAGPWMS 577
BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 239 bits (611), Expect = 2.220e-71 Identity = 169/192 (88.02%), Postives = 171/192 (89.06%), Query Frame = 3 Query: 36 PRPRGSQVFMLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGXXXXXXXXXXXXXXXXGIGEIGLRSSPGSHSPIHPRRDAGGGSSGYPGLVPAEAESAPPGVVEMEPAPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 611
PRPRGSQVFMLSSAGQDKKAHVAFAGTS+NVHPSVDTGTGGIG GIGE+GLRSS GSHSPIHPRRDAGGGSSGY GLVPAEAESAPPGVVEMEPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS
Sbjct: 537 PRPRGSQVFMLSSAGQDKKAHVAFAGTSSNVHPSVDTGTGGIGGAAPSFPAYRGMAGSSGIGEMGLRSSSGSHSPIHPRRDAGGGSSGYSGLVPAEAESAPPGVVEMEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 728 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10299.301.1 >prot_Ecto-sp13_S_contig10299.301.1 ID=prot_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp MLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGGAAPSFPAYRGTAGSSback to top mRNA from alignment at Ecto-sp13_S_contig10299:2998..3657+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10299.301.1 ID=mRNA_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10299:2998..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10299:2998..3657+ >mRNA_Ecto-sp13_S_contig10299.301.1 ID=mRNA_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10299:2998..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |