mRNA_Ecto-sp13_S_contig10297.300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: D7FM33_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM33_ECTSI) HSP 1 Score: 654 bits (1686), Expect = 4.220e-226 Identity = 513/649 (79.04%), Postives = 522/649 (80.43%), Query Frame = 1 Query: 1 MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKTAAEXXXXXXXXXXX-AGPRANPFGAAQAVDTTQRDKEIEAKAEAAKQTSLRRRDEAVRSSKPAEGGGEDXXXXXEMAADAEGDESEPAAAADKEDDT-----------------------AREGDGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGERPSFGRRNEGDSAGXXXXXXXXXXRGMEREPFQPPAPPAGNAFAKRFGSNFDRDSERSYPRPNAGGMGGXXXFDRRDDDXRGGGMGXXXXXXXXXXXXXXXSXXXXXXFDLRDDGGGRXXXXXXFDRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAVSPEARASPLARPSGGGGFKGGQDSSTSPTAASLSKMSIKEPKNEVAAAPPVELDPEPQPVSXXXXX--EPKEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDK AAEXXXXXXXXXXX AGPRANPFGAAQAVDTTQ+DKEIEAK EAA+QTS RRRDEAVRSSKPAEGGGED A G+++ PA AA ++ T A E DGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXRDGERPSFGRRNEGDSAG XXXXXXXX APPAGNAFAKRFGSNFDRDSER YPRPNAGGMGG FDRRDDD RG XXXXXXXXXXXS XX GGR XXFDR XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX RRPGA SPEARASPLARPSGGGGFKGG+DSSTSPTAASLSKMSIKEPK EVAA XXXXX EPKEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASP DMKWMGKDEFG AL+ALSTGKDSTQQQMGMIYAVVAKCH LGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE Sbjct: 1 MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQKDKEIEAKVEAARQTSFRRRDEAVRSSKPAEGGGEDGGATAXXXG-AAGEDASPATAAMEDGTTKTAADXXXXXXXXXXXXXXXXXTAGEEDGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGRGXXXXRDGERPSFGRRNEGDSAGGGXXXXXXXXXXXXXXXXXXXAPPAGNAFAKRFGSNFDRDSER-YPRPNAGGMGGGGGFDRRDDDRRG--------XXXXXXXXXXXSGGSGXXXXXXXXSGGRMGGRXXFDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRFSRDSHDDXXXXGAYRRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSKMSIKEPKKEVAAXXXXXXXXXXXXXXXXXXXXXEPKEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPEDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 639
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: W7TDG6_9STRA (Putative cleavage-induced protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.070e-15 Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 1408 ASAAEAL-ASGKRGKDLKEFVLAQEKRTTA-GALLAAALEGTASPGD----MKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEE 1848 A A+AL ASG +GK+L + AQEK A G+ + + G+ + + WM ++G L KD+T Q+ +YAV G+PK+GG +++ +F G+Y DL +E AF W+DD D + KAV+QTTPWF WLE+ +E Sbjct: 134 ADVAKALVASGLKGKEL--WAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKR-RLAKDTTDQKEA-VYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLETADE 281
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: G5ABF4_PHYSP (W2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ABF4_PHYSP) HSP 1 Score: 83.6 bits (205), Expect = 3.710e-15 Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1 Query: 1420 EALASGKRGKDLKEF---VLAQEKRTTAGALLAAALEGT--ASPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 + LASGK+G++L + A+ R + + A E T + W+ +G L D ++QM +YA+ + FPK +++ FM +Y+ D+ EE F E+K DVD GRMKA++QT+ W WLE+ EEE +E++E Sbjct: 3 QVLASGKKGEELAAVAKDIFAKNGRPSGAVVFEAVTEATEDVAKASANWIALPAYGELLKLAMEDTDK-KEQMHALYALQVFLNKHDFPK----GLIEKCFMALYSLDIIEETGFFEYKYDVDGDVPGRMKAIIQTSNWLTWLETPEEESEEEDE 152
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A329T1N6_9STRA (W2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1N6_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.030e-14 Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 1396 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 EV R + + LASGK+G++L E + ++ GA++ + A + W+ +G L D + QM +YA+ + FPK +++ FM +Y+ D+ +E F E+K DVD A GRMKA++QT+ W WLE+ EEE +E++E Sbjct: 66 EVDRETMKQVLASGKKGEELAEAAKEIFKKNGRPTGAVVFETVTNAAEDVAKSSANWIAMPAYGELLKFAMEDSDK-KDQMEALYALQIFLNKHDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDAPGRMKAIIQTSTWLTWLETPEEESEEEDE 223
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A662WJY7_9STRA (W2 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJY7_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.630e-14 Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 1 Query: 1396 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 EV R + + LASGK+G++L L + +GA+L + A + W+ +G L D Q Q+ +YA+ + FPK V++ FM +Y+ D+ E+ AF E+K DVDS + GRMKA++QT+ W WLE+ EEE DE+E+ Sbjct: 163 EVDRETMKQVLASGKQGEELAAVAKDLFAKLGRPSGAVLFETVANAAEDVAKASANWIAMPAYGELLKFGMESADK-QDQLHALYALQIFLNKHDFPK----GVMEKCFMALYSLDIIEDAAFFEYKYDVDSDSPGRMKAIIQTSSWLTWLETPEEESDEEED 320
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A2P4X1N8_9STRA (W2 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X1N8_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.250e-14 Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 1 Query: 1396 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 +V R + + LASGK+G++L + + ++ +GA+L A+ A + W+ +G L D + QM +YA+ + FPK +++ FM +Y+ D+ +E F E+K DVD GRMKA++QT+ W WLE+ EEE +EDEE Sbjct: 248 DVDRETMKQVLASGKKGEELAQVAKDIFKKNGRPSGAVLFEAVTTAAEDVAKSSANWIAMPAYGELLKFAMEDSDK-KDQMEALYALQIFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESEEDEE 405
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A662XJK7_9STRA (W2 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJK7_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.920e-14 Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 1 Query: 1396 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 EV R + + LASGK+G++L L + +GA+L ++ A + W+ +G L D Q Q+ +YA+ + FPK V++ FM +Y+ D+ E+ AF E+K DVDS + GRMKA++QT+ W WLE+ EEE DE+E+ Sbjct: 282 EVDRETMKQVLASGKQGEELAAVAKDLFAKLGRPSGAVLFESVTNAAEDVAKASANWIAMPAYGELLKLGMESADK-QDQLHALYALQIFLNQHDFPK----GVMEKCFMALYSLDIIEDAAFFEYKYDVDSDSPGRMKAIIQTSSWLTWLETPEEESDEEED 439
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A8K1FFV2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFV2_PYTOL) HSP 1 Score: 86.7 bits (213), Expect = 3.440e-14 Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 1 Query: 1405 RASAAEALASGKRGKDLKEF---VLAQEKRTTAGALLAAALEGTAS--PGDMKWMGKDEFG--LALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 RA AE LASGK G+DL + V A+ R + + A + S W+ ++G L + KD Q+ +YA+ + FPK V++ FM +Y D+ +E AF E+K DVDS GRMKA++QT+ W WLE+ EEE +E++E Sbjct: 313 RAIIAEVLASGKTGEDLAKVAKTVFAKSGRPSGAVIFEAVTKQAESVAKASANWIAPQQYGELLKFAMADAEKDD---QVKALYALQVFLNTHDFPK----GVMEKCFMALYTLDIIDEAAFFEYKYDVDSDVPGRMKAIVQTSNWLTWLETPEEESEEEDE 467
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: W2R9I9_PHYPN (W2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2R9I9_PHYPN) HSP 1 Score: 85.9 bits (211), Expect = 4.840e-14 Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 1 Query: 1396 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1869 EV R + + LASGK+G++L E + ++ +GA++ A+ A + W+ +G L D + QM +YA+ + FPK +++ FM +Y+ D+ +E F E+K DVD GRMKA++QT+ W WLE+ EEE DE+++ Sbjct: 272 EVDRETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAEDVAKSSANWIALPAYGELLKFAMEDSDK-KDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESDEEDD 429
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Match: A0A0P1B802_PLAHL (Hypothetical cleavage-induced protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B802_PLAHL) HSP 1 Score: 85.5 bits (210), Expect = 5.750e-14 Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 1 Query: 1426 LASGKRGKDLKEFV--LAQEKRTTAGALL----AAALEGTASPGDMKWMGKDEFGLALSALSTGKDSTQQQMGMIYAVVAKCHGLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDE 1866 LASGK+G++L + + + K +GA+L AA E A W+ FG L + D + QMG +YA+ + FPK +++ FM +Y+ D+ +E F E+K DVD GRMKA++QT+ W WLE+ EEE D+++ Sbjct: 266 LASGKKGEELAQNAKEIFKSKGRPSGAVLFETVTAAAEDVAKS-SANWIAMPAFGELLKLVMVDSDK-KDQMGALYALQVFLNKYDFPK----GLLEKCFMALYSLDIIDEAGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESDDED 412 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10297.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10297.300.1 >prot_Ecto-sp13_S_contig10297.300.1 ID=prot_Ecto-sp13_S_contig10297.300.1|Name=mRNA_Ecto-sp13_S_contig10297.300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=624bp MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKTAAback to top mRNA from alignment at Ecto-sp13_S_contig10297:3071..5912+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10297.300.1 ID=mRNA_Ecto-sp13_S_contig10297.300.1|Name=mRNA_Ecto-sp13_S_contig10297.300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10297:3071..5912+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10297:3071..5912+ >mRNA_Ecto-sp13_S_contig10297.300.1 ID=mRNA_Ecto-sp13_S_contig10297.300.1|Name=mRNA_Ecto-sp13_S_contig10297.300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1872bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10297:3071..5912+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |