mRNA_Ecto-sp13_S_contig10296.299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10296.299.1
Unique NamemRNA_Ecto-sp13_S_contig10296.299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10296.299.1 vs. uniprot
Match: D7FTM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI)

HSP 1 Score: 582 bits (1500), Expect = 1.230e-201
Identity = 354/434 (81.57%), Postives = 366/434 (84.33%), Query Frame = 1 
Query:    7 QRKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTRVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQVEEESLAGPGDSAEPQRPPSLTRKITTEYLRVGQLLLGKAEDDFLELSPSSAPAKDATAGCVGAAASWGGPGDAESSGGGGSNGLPRRQRSPKRGGTFRNRAPRDRGDGXXXXXXXXXXXXXXXXGRGAAED--DKGLEMRDTSGQPKGGRWGEEEXXXXXGED--GTFVGSASGAGRHRAGAENIPLSSPSSSTSSVPQGIMAHKRGVRMWSGAGRAYGSGGGERWIGFAGSPRKRRPPVRTAWDDDR-VXXXXXXXXEDELLGNGDGNSERDPLAASSPSAMESGRRKDNGXXXXXXXXXTSPEAFGVAKQDDRSSGGEESATFFKEEDR 1293
            +RKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFT+VDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQVEEE L G  DSAEPQRPPSLTRKITTEYLRVGQLLLGKAEDDFLELSPSSAPAKDATA C GAAAS GGPGDA+       NGLPRRQRSPKR             D XXXXXXXXXXXXXXXX         + GLEMRDTSGQPKGGRW +EE  XXX     GTFVGSA GAGRHRAGAENIP SSPSSSTSS+PQGIMAH+RGVR+WSGAGRAYGSGGGERWIGFAGSPR  RPPV TAWDDDR          EDE+LGN +G+SER+PLAASSPSAMESGRRK   XXXXXXXXXTSPE F VAKQDD SSGGEESATFFKEEDR
Sbjct:  246 ERKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTQVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQVEEEPLDGSDDSAEPQRPPSLTRKITTEYLRVGQLLLGKAEDDFLELSPSSAPAKDATAACSGAAASEGGPGDADXXXXXXXNGLPRRQRSPKRXXXXXXXXXXXDRDXXXXXXXXXXXXXXXXXXXXXXXXXXETGLEMRDTSGQPKGGRWEDEEEGXXXXXXXXGTFVGSAGGAGRHRAGAENIPPSSPSSSTSSLPQGIMAHERGVRVWSGAGRAYGSGGGERWIGFAGSPRNSRPPVPTAWDDDRGTTTTAAGAGEDEVLGNSNGSSEREPLAASSPSAMESGRRKXXXXXXXXXXXXTSPEVFRVAKQDDSSSGGEESATFFKEEDR 679
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BLAST of mRNA_Ecto-sp13_S_contig10296.299.1 vs. uniprot
Match: A0A6H5KI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI22_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.640e-57
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    7 QRKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTRVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQ 312
            +RKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFT VDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQ
Sbjct:  446 ERKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTGVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQ 547
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BLAST of mRNA_Ecto-sp13_S_contig10296.299.1 vs. uniprot
Match: A0A835ZL91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL91_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.550e-16
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:   10 RKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTRVDTALAVWILMIIACGIHGVLWQAAVIQH-----WLKSYGNAQ-----------VEEESLAGPGDSAEPQRPPSLTR 381
            RK+SF+TSL DF +YFDCL  VA+I +  + Y ++N+TS+ +DH+  P  LP++KR   S+  +D AL   ILM +  G    LW+A + QH     W +S   +Q           ++ E    P  SAE   PP   R
Sbjct:  300 RKYSFITSLSDFAKYFDCLSSVAYIGLDQYRYLRINLTSSVMDHVVAPAVLPDIKRNRPSW--IDIALITAILMGMTAGCQAALWRAEIPQHIRKRKWQRSARTSQDLSPEPPDIELLDMEGRESPDYSAELGEPPRAHR 437
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10296.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTM5_ECTSI1.230e-20181.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI22_9PHAE1.640e-5798.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZL91_9STRA8.550e-1637.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10296contigEcto-sp13_S_contig10296:1714..5790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1296
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008850.1
Cds size1296
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.2018511-CDS-Ecto-sp13_S_contig10296:1713..26971681462521.2018511-CDS-Ecto-sp13_S_contig10296:1713..2697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10296 1714..2697 -
1681462521.2122538-CDS-Ecto-sp13_S_contig10296:3190..33081681462521.2122538-CDS-Ecto-sp13_S_contig10296:3190..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10296 3191..3308 -
1681462521.2203426-CDS-Ecto-sp13_S_contig10296:3804..38871681462521.2203426-CDS-Ecto-sp13_S_contig10296:3804..3887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10296 3805..3887 -
1681462521.2312448-CDS-Ecto-sp13_S_contig10296:5679..57901681462521.2312448-CDS-Ecto-sp13_S_contig10296:5679..5790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10296 5680..5790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10296.299.1prot_Ecto-sp13_S_contig10296.299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10296 1714..5790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10296.299.1

>prot_Ecto-sp13_S_contig10296.299.1 ID=prot_Ecto-sp13_S_contig10296.299.1|Name=mRNA_Ecto-sp13_S_contig10296.299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp
LFQRKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISL
PEELPEVKRRYESFTRVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSY
GNAQVEEESLAGPGDSAEPQRPPSLTRKITTEYLRVGQLLLGKAEDDFLE
LSPSSAPAKDATAGCVGAAASWGGPGDAESSGGGGSNGLPRRQRSPKRGG
TFRNRAPRDRGDGGGAGGSRQRQGSARGGGRGAAEDDKGLEMRDTSGQPK
GGRWGEEEEEEEEGEDGTFVGSASGAGRHRAGAENIPLSSPSSSTSSVPQ
GIMAHKRGVRMWSGAGRAYGSGGGERWIGFAGSPRKRRPPVRTAWDDDRV
TTTAAAGGEDELLGNGDGNSERDPLAASSPSAMESGRRKDNGNGSRSRSR
STSPEAFGVAKQDDRSSGGEESATFFKEEDR*
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mRNA from alignment at Ecto-sp13_S_contig10296:1714..5790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10296.299.1 ID=mRNA_Ecto-sp13_S_contig10296.299.1|Name=mRNA_Ecto-sp13_S_contig10296.299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10296:1714..5790- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTTTCAGCGCAAGTTCAGCTTCGTCACGTCCTTGAAAGACTTCGTTCG
GTACTTCGACTGCCTTGACGACGTGGCGTTTATCGCAATCGGTCCTCACG
AGTACTACAAGGTGATCGATGGTGTTCAAACGACGGGGGATGGGGCGTTG
GCCATCGCCTAGATGCAATGGCGATCGAGCCCTCTCCTCCACCTCCTCCT
CCTGAAGCCAGGTGTAGCCGGTTACATAACACTGAGATGTAGCGCGATTG
TGCAGCAGGCGACATGGGATGAGTACTTGGCGCCCCCAAGAGGGAAGGAG
AGTACTGGAGGTGACGCAACATAACACACCTTCCCTAGACCGGTTTTGAA
CTGGCGATTACTCCGCGACGAAGAGGACGAAAAAATCAAGCGATAGGTCT
CTGGGAAGCCCTCGACGAGACGGCTCCAATGCAGCCATTGTCGGCACCGC
CGCTCTTTCTCGAGAATTTTTTTAAATCGGGTTTTGAAGATCCGTCAACA
AAGAATGATATAGTAGACTATGTCACCTGTTAGCAGTAGTACGGATGCGT
CACGAAGCGTGCACCCGAGTGCTTTGCCAGCACTCGGTACAAGCTGGTTC
AAGGAAATGGATAAAAGAATATTCAACATGAAAACTTCACGCCGTTTTCA
GGAGTTAGACTTTGAAACTTCGCACACATGTGCCTTGGGTCAGTACCAAA
CTTTGGATTGAGGGGTATTTTTTATGTTTTCCTCCTATCGCCGGATATCC
GGGGTCCTAGATCTTTCCGGGTCGTATGCGCCTCCTGGGACCCCGGATGT
CCGGCGATAGGAGCAAAAAATAAAAAGACCCGTCCATTAAAAGTTTCGTA
CAAACCCAAGGTACATGTGTGCAAAGTTTCAAAGTCTAAGTCCTAAAAAC
GGCGTGAAGTTGTCAGCTTTTGTGCCATCAAGTATTGCGCATCCTGATTT
TTGCCCAAACCACTTGATTAAAGTAAAGAATCGCATCTGCAGGGCCTCTT
TCTTACTGCAAAGCCCCGTGATGCGCCAGTTTTACAATCGCCACTTCAAA
ACTTCCTGGAAAGGGTCATTGCACTATCTCGGAGCGAAAAAAAAAAAAGT
GGTATTCATATATTTGGAACCGGCTTTCGGGGGTTCCACACCAGGGACCC
CACAACGCCGGTCAGGACTGCAAGCATCGTCTCATATTTTTTTTTGCGGT
TTGCGGAACAATGTTGCACGATACGGTCAAAATCTGACGGCTATTCGACA
GTTACATCGGTATATACAAGGCAAACAAGCACGAGACTATGTGTTTTTCA
TCCCATTTAAGATCCGTCCATGGAAATCTGACGACGCCAAATCGCAGCAG
TCTTACCACCATTTTGGGCATAGCTTGCCTTCACAATAACCGTTTTCATT
TTGTTTTCTTCTTTAGATCCCCTAGACCATAGGGATCGCTTTGGTGCAAA
ACTGTGGTAGAAAGAGGTTGGGAGTGCGGGGTTGCATGCATTGTTAGGTA
TTATCATAATGAAGGCTTCTGATTGGCTGAGACACATTTATGCCCATAGC
ATTGTGGCCACGGCTCTGATTGAAATTCCGGCCACGGCGATTGTTCCGTT
GCTTATGGGGGTCACTACGATACAAAATATGTCAAATTTGCGCACGTATT
TCGCCTGGCAGCTGTGGTTGAACGAATTTTGGTTCATATCCCTGAACCAG
CTTGTATCGAGATCGTGAAGATGGATCGAAAAGCGACTGGAGAGCTCCAC
GCAATGCAGCTCCCGTTGTGTTGTCCGAGGGAGAAAGAGGAATAGAGCGA
TGGAGCGGAAGTTTTGCTTGCCGTGTATCTTGAACCTTTCCCTATTGGCT
GCTGTTGGGTTATCCGTGTCGTCGTGCCGTGTGTCTGTCACCGAATGGCG
AAGGTGAACATCACATCAACAAAGCTGGACCACATATCGCTGCCCGAGGA
ACTGCCGGAAGTGAAACGGCGATATGAGAGCTTCACGTGAGCCCCCCCCC
TCCCGCGTGCAGAATATCTTGCGGATTTTTAGGCTTACACTCGGAATAGT
ATAGATTGCAGCTCTCGTGGCAATGAGTACGAACTCCCATGATACCAGAG
GTGCGGGTGTTTTCCGCACTCCTCGAACCGGATGGGTGGAAACATCCGCA
ATTTCGACACTGCTTCACCGTAGCGAGCGCTCTGTACACTCCGGCTTCCC
ATTCCTCGATTGCCGCATTCCTTCAACAAGCTAAAGGCGGGAAGAGATAA
AATATGGGATAGTGGGGGAAACATTTTTGGGAGATCTTTGGCAAAGTAGG
AAGGAGCGATTGACCATCGGTGGTTGGTCCTGTGGGGAATAGCACTCCGT
TCTCTCGGGGACGCGTGGTCAATGGCGTAACCGCTTTGGCATGCCAACAA
CGAGCTTGGTTCCTTGGCCAGCGGACTGTGTTTGCAAACACGCGTACCGC
CCCCTCGCTGTTTTCCACTCGTGAACTTGTAGGCGAGTGGACACCGCGCT
CGCGGTATGGATCTTGATGATCATCGCGTGCGGGATTCACGGGGTACTCT
GGCAAGCGGCTGTGATCCAGCACTGGCTCAAGTCGTACGGCAACGCGCAG
GTAGGATTCCCTTTCGTGTATGTTGTGTGGATATTTGTGTTCGTGATTTA
TTTCCGTTGCTTGCGGGTAGTGCTTTTACCGCGCTACGCTGCGGCTGGAT
TTCTCTTGAAGTCTGTCTCTGCTTTTAGCAAGACAAAGGACGTGGATGGG
CAGCAACCAAAAAATAAGCGTGTTGGGAGAGCCATGTGAATATCTGTCAG
CTACTTCCCCCCCCCCCCCCGGGAGGCATGCCTACCAGCGTCAGGATCTA
CAACGCCCATTGCCGTCTCGCCCCCGTGAGATGTACACACGAGCACGTCC
AATCTGCGGAACCCTCGCCCCTTTCGCTAGCGTCCTGTGGTCGCCCCTCT
TGCATCCTGCGTGCTCATGAGCCGCCGCACAACAGCAGTGATGCCATCGT
AGGCGTTTTTTTGCACCCCGCGCGGTATAGGCTAGGTGGGAAACCTGCAG
CACCTAAATCGTATTTTCGTCATTCACGACCTCCCCTATTTAGGTGGAGG
AGGAGTCCTTGGCAGGGCCGGGTGATTCTGCAGAGCCTCAGAGGCCCCCG
TCCCTCACCCGGAAGATAACAACGGAGTACCTACGAGTGGGGCAGCTGCT
TCTCGGCAAGGCCGAGGACGACTTTCTCGAGCTCTCTCCCTCCTCCGCTC
CGGCCAAAGATGCCACTGCTGGTTGTGTTGGTGCTGCCGCGAGTTGGGGG
GGTCCCGGCGACGCGGAATCTTCGGGGGGGGGCGGCAGCAACGGACTGCC
GCGGCGGCAACGATCGCCGAAGCGCGGCGGCACTTTCCGCAACAGGGCCC
CGCGAGATCGCGGCGATGGGGGGGGTGCTGGGGGCTCCAGGCAAAGGCAA
GGATCCGCCAGAGGAGGAGGAAGAGGCGCAGCAGAGGACGACAAGGGTTT
AGAGATGCGAGACACATCGGGACAGCCGAAAGGCGGTCGGTGGGGGGAGG
AGGAGGAGGAGGAGGAGGAGGGAGAGGATGGTACGTTTGTCGGGAGCGCC
AGCGGTGCTGGCCGGCATCGAGCAGGCGCCGAAAATATCCCCTTGTCATC
GCCGTCGTCGTCGACATCCTCCGTGCCCCAGGGTATCATGGCCCACAAAA
GGGGGGTCCGCATGTGGAGTGGTGCCGGCCGGGCGTATGGCAGTGGTGGC
GGGGAGAGGTGGATAGGGTTCGCGGGGTCCCCTCGAAAAAGACGGCCGCC
GGTACGGACGGCATGGGACGACGACCGCGTTACTACTACCGCCGCCGCGG
GGGGGGAGGATGAGCTCCTGGGCAACGGCGACGGCAATTCGGAACGTGAC
CCTCTGGCGGCTAGCTCGCCGTCGGCGATGGAGAGCGGTCGCAGGAAAGA
CAATGGAAACGGGAGTAGAAGTCGAAGTAGAAGCACCAGCCCCGAGGCGT
TCGGTGTTGCGAAGCAGGACGACAGGAGTAGCGGGGGCGAGGAATCCGCG
ACGTTTTTCAAAGAGGAGGATCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10296:1714..5790-

>mRNA_Ecto-sp13_S_contig10296.299.1 ID=mRNA_Ecto-sp13_S_contig10296.299.1|Name=mRNA_Ecto-sp13_S_contig10296.299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10296:1714..5790- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTTTCAGCGCAAGTTCAGCTTCGTCACGTCCTTGAAAGACTTCGTTCG
GTACTTCGACTGCCTTGACGACGTGGCGTTTATCGCAATCGGTCCTCACG
AGTACTACAAGGTGAACATCACATCAACAAAGCTGGACCACATATCGCTG
CCCGAGGAACTGCCGGAAGTGAAACGGCGATATGAGAGCTTCACGCGAGT
GGACACCGCGCTCGCGGTATGGATCTTGATGATCATCGCGTGCGGGATTC
ACGGGGTACTCTGGCAAGCGGCTGTGATCCAGCACTGGCTCAAGTCGTAC
GGCAACGCGCAGGTGGAGGAGGAGTCCTTGGCAGGGCCGGGTGATTCTGC
AGAGCCTCAGAGGCCCCCGTCCCTCACCCGGAAGATAACAACGGAGTACC
TACGAGTGGGGCAGCTGCTTCTCGGCAAGGCCGAGGACGACTTTCTCGAG
CTCTCTCCCTCCTCCGCTCCGGCCAAAGATGCCACTGCTGGTTGTGTTGG
TGCTGCCGCGAGTTGGGGGGGTCCCGGCGACGCGGAATCTTCGGGGGGGG
GCGGCAGCAACGGACTGCCGCGGCGGCAACGATCGCCGAAGCGCGGCGGC
ACTTTCCGCAACAGGGCCCCGCGAGATCGCGGCGATGGGGGGGGTGCTGG
GGGCTCCAGGCAAAGGCAAGGATCCGCCAGAGGAGGAGGAAGAGGCGCAG
CAGAGGACGACAAGGGTTTAGAGATGCGAGACACATCGGGACAGCCGAAA
GGCGGTCGGTGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGATGG
TACGTTTGTCGGGAGCGCCAGCGGTGCTGGCCGGCATCGAGCAGGCGCCG
AAAATATCCCCTTGTCATCGCCGTCGTCGTCGACATCCTCCGTGCCCCAG
GGTATCATGGCCCACAAAAGGGGGGTCCGCATGTGGAGTGGTGCCGGCCG
GGCGTATGGCAGTGGTGGCGGGGAGAGGTGGATAGGGTTCGCGGGGTCCC
CTCGAAAAAGACGGCCGCCGGTACGGACGGCATGGGACGACGACCGCGTT
ACTACTACCGCCGCCGCGGGGGGGGAGGATGAGCTCCTGGGCAACGGCGA
CGGCAATTCGGAACGTGACCCTCTGGCGGCTAGCTCGCCGTCGGCGATGG
AGAGCGGTCGCAGGAAAGACAATGGAAACGGGAGTAGAAGTCGAAGTAGA
AGCACCAGCCCCGAGGCGTTCGGTGTTGCGAAGCAGGACGACAGGAGTAG
CGGGGGCGAGGAATCCGCGACGTTTTTCAAAGAGGAGGATCGGTAA
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