mRNA_Ecto-sp13_S_contig10295.298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10295.298.1
Unique NamemRNA_Ecto-sp13_S_contig10295.298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10295.298.1 vs. uniprot
Match: D7FM49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM49_ECTSI)

HSP 1 Score: 654 bits (1688), Expect = 1.590e-229
Identity = 379/477 (79.45%), Postives = 396/477 (83.02%), Query Frame = 1 
Query:    1 TQGRTMMDFQQFDAACLGMTKGLGAAESTRRQATFNSVLLEACRTIGGDQQVNGPANRPATECLVRPNVVPPESPLRGSFPAGFDQASSSQIISRGGKGALLDFLTVSPNDSGRWLLRPARRKENAKPWQGNQREEQDEDRXXXXXXXXXXQHPHTASTAGGLSDRAGHGSSCSPPPREGAALVDGGGDGQRATVTSVVGGAICDDGSGFLVMQKADRFRSWPPAWVKQCANSSSSGGEDARDSSKSQKPGIVLARGIFAAGSAHAAANTGSQVTALDTRLLMGSVSQKALLLQEELRSNRARLLEIQRHPGRGPAALSQCGTSPQKDTRADEKSXXXXXXXXXXXXXXXXXXASSRDCCNFLEDTQRSCGSHQPHCRAHPSAADSRPASCAVNASAEGSGTAPPESNLCCAALVGCRLSGASCVDTGDNSGDKTVAGRAGPGGAADGVNSLDGSLEGSMSTGSLSTGTRKSRAAAK 1431
            ++GRTMMDFQQFD ACLGMTKG+GAAE TRRQATF SVLLEACRTIGGDQQ N PANRPATE LVRP+V PPESPLRGSFPAGF Q                   T+SPNDSGRWLLR ARRKENA+P QGNQRE      XXXXXXXXXX  PH ASTAGGLSDR GHGSSCS PPREGAALVDGGGDGQRAT TS+VGGA C DGS FLVMQKADR RSWPPAWVKQCA+SSS GG+DARDSS+SQK GIVLARGIFAAGSAHA ANTGSQV ALD RLL+GS SQKALLLQEELRSNRARLLEIQRHPGRGP ALSQC TSP++ TRADEK             XXXXXXASSRDC NFLED+QRS  SHQ HCRAHPSAADS PASCAVN SAEGSGTAPPESNLCCAAL G RLSGA+CVD GDN GDKT AGRAGPGG ADGV+SLDGSLEGS+STGSLSTG  KSRAAAK
Sbjct:  146 SKGRTMMDFQQFDEACLGMTKGIGAAEGTRRQATFYSVLLEACRTIGGDQQDNDPANRPATEGLVRPSVAPPESPLRGSFPAGFGQ-------------------TISPNDSGRWLLRSARRKENAEPRQGNQREXXXXXXXXXXXXXXXXXXPHAASTAGGLSDRLGHGSSCSSPPREGAALVDGGGDGQRATATSMVGGATCADGSSFLVMQKADRLRSWPPAWVKQCADSSS-GGDDARDSSESQKTGIVLARGIFAAGSAHATANTGSQVKALDARLLIGSESQKALLLQEELRSNRARLLEIQRHPGRGPTALSQCRTSPRQGTRADEKPDKSRSPTTCAGAXXXXXXASSRDC-NFLEDSQRSFPSHQQHCRAHPSAADSHPASCAVNDSAEGSGTAPPESNLCCAALAGYRLSGATCVDIGDNDGDKTFAGRAGPGGGADGVDSLDGSLEGSLSTGSLSTGAGKSRAAAK 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10295.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM49_ECTSI1.590e-22979.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10295contigEcto-sp13_S_contig10295:1103..5612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1437
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010640.1
Cds size1422
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10295.298.1prot_Ecto-sp13_S_contig10295.298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10295 1103..5597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.0776596-CDS-Ecto-sp13_S_contig10295:1102..15451681462521.0776596-CDS-Ecto-sp13_S_contig10295:1102..1545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 1103..1545 -
1681462521.0873275-CDS-Ecto-sp13_S_contig10295:1877..19631681462521.0873275-CDS-Ecto-sp13_S_contig10295:1877..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 1878..1963 -
1681462521.0964534-CDS-Ecto-sp13_S_contig10295:2679..27681681462521.0964534-CDS-Ecto-sp13_S_contig10295:2679..2768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 2680..2768 -
1681462521.106331-CDS-Ecto-sp13_S_contig10295:3020..31861681462521.106331-CDS-Ecto-sp13_S_contig10295:3020..3186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 3021..3186 -
1681462521.1160827-CDS-Ecto-sp13_S_contig10295:3637..39751681462521.1160827-CDS-Ecto-sp13_S_contig10295:3637..3975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 3638..3975 -
1681462521.1259992-CDS-Ecto-sp13_S_contig10295:4641..48031681462521.1259992-CDS-Ecto-sp13_S_contig10295:4641..4803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 4642..4803 -
1681462521.1362867-CDS-Ecto-sp13_S_contig10295:5165..52531681462521.1362867-CDS-Ecto-sp13_S_contig10295:5165..5253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 5166..5253 -
1681462521.1534135-CDS-Ecto-sp13_S_contig10295:5547..55971681462521.1534135-CDS-Ecto-sp13_S_contig10295:5547..5597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10295 5548..5597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.164512-UTR-Ecto-sp13_S_contig10295:5597..56121681462521.164512-UTR-Ecto-sp13_S_contig10295:5597..5612Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10295 5598..5612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10295.298.1

>prot_Ecto-sp13_S_contig10295.298.1 ID=prot_Ecto-sp13_S_contig10295.298.1|Name=mRNA_Ecto-sp13_S_contig10295.298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
MMDFQQFDAACLGMTKGLGAAESTRRQATFNSVLLEACRTIGGDQQVNGP
ANRPATECLVRPNVVPPESPLRGSFPAGFDQASSSQIISRGGKGALLDFL
TVSPNDSGRWLLRPARRKENAKPWQGNQREEQDEDRKRSERRGRQQQHPH
TASTAGGLSDRAGHGSSCSPPPREGAALVDGGGDGQRATVTSVVGGAICD
DGSGFLVMQKADRFRSWPPAWVKQCANSSSSGGEDARDSSKSQKPGIVLA
RGIFAAGSAHAAANTGSQVTALDTRLLMGSVSQKALLLQEELRSNRARLL
EIQRHPGRGPAALSQCGTSPQKDTRADEKSDKSTSPTAGAGAGGGSGGAS
SRDCCNFLEDTQRSCGSHQPHCRAHPSAADSRPASCAVNASAEGSGTAPP
ESNLCCAALVGCRLSGASCVDTGDNSGDKTVAGRAGPGGAADGVNSLDGS
LEGSMSTGSLSTGTRKSRAAAKV*
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mRNA from alignment at Ecto-sp13_S_contig10295:1103..5612-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10295.298.1 ID=mRNA_Ecto-sp13_S_contig10295.298.1|Name=mRNA_Ecto-sp13_S_contig10295.298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10295:1103..5612- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAGGGGCGCACGATGATGGATTTCCAACAGTTCGACGCGGCGTGCTT
GGGCATGACCAAGGGGTGAGCCCAAAAGTCAGTAGCGTGGTGAATCACAG
GCAACATCGCGATTGTCTGCGTGTACCTCTCTTTACTGATTGACGAACAC
AATATCCAAGACGACGCATACATCAACGATTCCCAGTGCTGGGCTAGTAC
CGCCCTGATTGTGCAGCTGTCGTGTGGAAACGTGTGAGCTCCTAAATTAA
TACAGAGCGACGTCTATCCGTGTAGATCGCGCTGCAATTTCGACCACATA
CTGCGCACTTTTTGTAACAAACTTGCGCCTAAACTCGCTTCTCTCGTTGT
ATTGGCCAGACTCGGGGCGGCAGAAAGCACGAGACGGCAAGCAACGTTTA
ACTCCGTGCTGCTCGAGGCTTGTCGCACCATTGGAGGAGACCAACAGGTG
AAGGCGATTTGCGGGCAGTAGAAGGACGACTCGACAACGCACCAGCGCTC
AATGGTTGTCATTTCCGTTTCCCTCATGTCGTGCCTTCATTCGTTGCAAC
ACCCAAAAATACGTCAAAGCAATGGGCACACGTAGATGACACTTCCGAAC
TACACACTGTCCGGCGAAGCGACAAACGACGTCAATAATTTGTCATGAAA
CGCACGCATCAGAGAAATCTCGACATCATGACAGGAGGGCGTAACTCTCC
CTTTCCTATGTGACGCTTGGCCGTACCCCGTTGTACACATGAACCTATCC
TGTGGTGCGTGGTCGTACGCACCGTACACATTCGACTACGTCTGTCTGTG
CTGCCCCAGGTCAACGGCCCTGCTAACCGTCCGGCAACCGAATGCCTCGT
GAGGCCAAACGTTGTGCCTCCCGAATCGCCGTTGAGAGGATCGTTTCCTG
CTGGTTTCGATCAGGCAAGCAGCAGCCAAATAATCTCCCGGGGTGGGAAA
GGAGCTTTGCTGGATTTTCTGGTGGAAGTAGGTACCGTAGGTTTGCCGTA
TGCGTGGCGTTTTGGGATAGTGGCTCGGCTCGCCTTGCGGGGAGGCGTGG
CTCACGCACCGTTGATAGTAAAGGAGCTAGGAAAGAGGGTTGAATATCTG
GCCGGAGCCCATCTTGTCGTCCCTGACCCATCACTGAAGAGGTCGTGTTG
CCTTCGAAGGCGAAAACGTTCGAGGCCAGTACGAACATCCTACTTGGTAG
AAGTAGATGTTAAAATAGCGACCTGAACAGAGCGTAAACTATCGCGACGC
CAAGGGCTTTACACCACTCCCATAAATATAGACGCATTGGTCGAAACAAT
AGGACTGGATGAAACCACGATCTCAAGGGCTTAACACTACTCCCTCAAAT
ATAGACGCATTGGTCGAAGCAATAGGGCTGGATGAAACCACGATCTCCGT
TACTTGAGTAATATCATGGTGAACCTATCTACGCGTTGAACCGACTCAGC
GGCACTTATATTCAAGGGCTCGCCAAAATCTCCTAGCCTGCTGAGAAACG
GCGGCAGGTCCGGTCAATTCCTCAAACCGATTTCACGAAGAAATACCGGT
GAGCTCAGTCAAGCACACTGAAGCTCCATATCGGCATTGTAACGCTCGCT
CCCAAACCCCCCCCACGAACCATCATCAACACGACAGACCGTCAGCCCTA
ACGATAGCGGGCGGTGGCTCCTGAGGCCGGCAAGACGCAAAGAAAACGCG
AAGCCATGGCAAGGGAATCAACGCGAAGAGCAGGATGAAGACCGGAAGCG
GTCAGAAAGAAGAGGGCGACAGCAGCAACATCCCCATACCGCATCGACCG
CCGGGGGCTTATCCGACCGAGCGGGCCACGGCAGTAGTTGTTCGCCGCCC
CCGCGAGAAGGCGCAGCCTTGGTCGACGGTGGCGGTGACGGGCAAAGAGC
TACGGTTACATCGGTGGTGGGTGGCGCCATTTGCGACGACGGAAGCGGTT
TCTTGGTGATGCAGAAGGCCGACAGGTTCGTGAAGGCGACATTGAAAGAA
TACCGGAAGAAACGATTCAGCCGTTGACCTTCAGAGCGGACAAAGTGATG
TCTTAGGAAGGGGTGAGGCGTGCATACCATTGTTTATGGCAATGGAGCAC
TACTAGAGTATCGGGACAACGGTTCTCGTTGCTCTTCTCACGTTCAGGCC
TTGTGTCGTCTATCAGAACAGACTTCGTTTTTCTCCATTTTCCAGGCATC
CACGTGGTGGCGGAACCAATTCCTTGCGCAGGAGGACTCGTAGTGTAATT
CAAGACACCGATCGCCGTCTGCAACAAGAACGTCACCAGCTTCGGCTGTT
GTAACTATCACGAAAACCAATAACGTTATCGACGCCTTGACACAAAAACA
TCGACATTACTTCGCCATAAGCACGTGCCCCATAGCGGTTCATTCTCCTC
TTTGCCCGCAAAATTCTGGCGACAAGATTCCGGTCCTGGCCACCGGCATG
GGTGAAGCAATGCGCGAATAGTAGTAGTAGTGGCGGCGAAGATGCTAGAG
ACAGCAGCAAAAGCCAAAAACCTGGAATCGTTCTTGCGAGGGGCATATTT
GCAGCGGGATCTGCGCACGCGGCAGCAAACACAGGGTCACAGGTGAAGCA
GCAATCAAGCAAGCCAAGTCGCGTACCCACGTGGTTACTACCTATGTCGC
AGCGCTACCCATCACTCGCGCAACCGGACACGTTGTGAGGACCATCAATA
CTTCAGGCTGTTCGAATGTCTATTCCATTTTTTGTTTCGCTTGCCCGAGA
AACCGCAGTGTCGTCGTCGTCGCCGTCGTCGTTGCTGTTGAGTATTGCCA
TGCTGCTCTTGTTGAATATTTCGTGTCTCTGCCATCCCCATCAGGTCACG
GCTCTGGACACTCGATTGCTGATGGGTTCTGTGTCGCAAAAGGCGCTGCT
GCTCCAAGAGGAGCTGAGAAGCAACCGTGCCAGGTACGTCAAGTTTTCGA
CGTCATAGCTCGAAATGTTGCCAACGACGTTGTGCGCAGTTGGTTGGCGT
TTCGTTCGACCGACCCCGGGGTTCAACGGTTGGTTCACGGAAGCAGGGCT
AGGCCGTGACGCAAGAAGTATGCTGCGTCTTAGCCACCCGATTCGTTGGT
TGTCATGGAACAACGCCCGTCCGCGTCCTCACGGATCATTCTCAGTGCCC
TTTTCTAAAAAAAACGACTAGCAAAAGCCAGGCCAAAGCAAAACTATCTG
CCCGAGAGAGCGCCCAAGAGAAAGTGTTGAGAAGTATTTCCAGGGACGAT
CTGACACCAGGACGAGACAGGACTTCTTCACGGAGCGTGTGATACAGTCC
TTGCGCTGACCATTCGGCCACGCCGGCGGGGATGAAAACAGATTTAGAAA
AGTGGGCTACAGATTCTCTCCGGCCATCGATAGGTACGAACGCGCAGACG
TGAGTACAGCGCGGGGGACGGTGTGTTTATCGTCAACACTTCCGTGATGT
CCAGGCTTGGGGGAACGAAAGGGCGACTCTTTCGGCGGGCACAAGGCGAG
ACGACACACCTTCCGCATGGACACACGACCGCCTCCCTCCCGTATCACAA
CCCTCGAAGAGTCAAGCCCGATCAACAACTCTCCCGTGACAGTTTTTGCC
GTGCGTTCACATGCAAACTACTTCTCCCGCTCCGCCCCCTGCCTCGAAGG
CTTCTTGAGATCCAACGACACCCAGGCCGAGGGCCCGCAGCACTGTCGCA
GTGTGGGACGTCTCCCCAAAAAGACACCAGGGCCGGTAAGCTTCGGCCAC
AACACGAGGGGTGTATTTTGTTCTGGTACTTGTGGGCGTTTCCGTTGCGA
ATAGGAGGCAATGATACCCGGTCTAGAAACGGCTTAGTGGTTAGTGACTA
GTCGAATGGCTGAGGCACGCCACACAGTGAATGCACCTGTATACTTCAGC
TCCCCTGTTTCCGCGAAACGTAGACGCGCTCCGTTCGGGAGGGTTACGGC
ACGTGGATGGGGTGTTGCGATCGCGTTGTCGTAGTATCAGCTCTCCACAC
ACCCTCTTGCGCAAAACACATCCAACGACGGCCCCCGCCTCCTGCCTGTC
TGTTGGTTTCTCTTAAGACGAAAAATCGGACAAATCGACGTCGCCCACTG
CCGGTGCCGGTGCCGGTGGTGGTAGCGGCGGTGCAAGCAGCCGTGACTGC
TGTAACTTTCTCGAAGATACCCAGAGGAGCTGCGGAAGCCACCAACCACA
CTGCCGAGCACACCCGTCGGCTGCAGATTCTCGTCCGGCGAGCTGCGCCG
TCAATGCCAGCGCGGAAGGAAGCGGAACTGCACCGCCGGAGTCCAACTTG
TGTTGTGCTGCGCTAGTCGGGTGCCGCTTGTCCGGTGCCAGCTGTGTCGA
CACTGGTGACAATAGCGGTGACAAGACCGTTGCAGGTAGGGCAGGTCCTG
GGGGGGCGGCGGATGGCGTGAACAGCCTGGACGGGTCGCTGGAAGGGTCG
ATGTCGACGGGGTCCCTGTCAACGGGAACGAGAAAGTCCAGAGCCGCGGC
GAAGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10295:1103..5612-

>mRNA_Ecto-sp13_S_contig10295.298.1 ID=mRNA_Ecto-sp13_S_contig10295.298.1|Name=mRNA_Ecto-sp13_S_contig10295.298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10295:1103..5612- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGATTTCCAACAGTTCGACGCGGCGTGCTTGGGCATGACCAAGGG
ACTCGGGGCGGCAGAAAGCACGAGACGGCAAGCAACGTTTAACTCCGTGC
TGCTCGAGGCTTGTCGCACCATTGGAGGAGACCAACAGGTCAACGGCCCT
GCTAACCGTCCGGCAACCGAATGCCTCGTGAGGCCAAACGTTGTGCCTCC
CGAATCGCCGTTGAGAGGATCGTTTCCTGCTGGTTTCGATCAGGCAAGCA
GCAGCCAAATAATCTCCCGGGGTGGGAAAGGAGCTTTGCTGGATTTTCTG
ACCGTCAGCCCTAACGATAGCGGGCGGTGGCTCCTGAGGCCGGCAAGACG
CAAAGAAAACGCGAAGCCATGGCAAGGGAATCAACGCGAAGAGCAGGATG
AAGACCGGAAGCGGTCAGAAAGAAGAGGGCGACAGCAGCAACATCCCCAT
ACCGCATCGACCGCCGGGGGCTTATCCGACCGAGCGGGCCACGGCAGTAG
TTGTTCGCCGCCCCCGCGAGAAGGCGCAGCCTTGGTCGACGGTGGCGGTG
ACGGGCAAAGAGCTACGGTTACATCGGTGGTGGGTGGCGCCATTTGCGAC
GACGGAAGCGGTTTCTTGGTGATGCAGAAGGCCGACAGATTCCGGTCCTG
GCCACCGGCATGGGTGAAGCAATGCGCGAATAGTAGTAGTAGTGGCGGCG
AAGATGCTAGAGACAGCAGCAAAAGCCAAAAACCTGGAATCGTTCTTGCG
AGGGGCATATTTGCAGCGGGATCTGCGCACGCGGCAGCAAACACAGGGTC
ACAGGTCACGGCTCTGGACACTCGATTGCTGATGGGTTCTGTGTCGCAAA
AGGCGCTGCTGCTCCAAGAGGAGCTGAGAAGCAACCGTGCCAGGCTTCTT
GAGATCCAACGACACCCAGGCCGAGGGCCCGCAGCACTGTCGCAGTGTGG
GACGTCTCCCCAAAAAGACACCAGGGCCGACGAAAAATCGGACAAATCGA
CGTCGCCCACTGCCGGTGCCGGTGCCGGTGGTGGTAGCGGCGGTGCAAGC
AGCCGTGACTGCTGTAACTTTCTCGAAGATACCCAGAGGAGCTGCGGAAG
CCACCAACCACACTGCCGAGCACACCCGTCGGCTGCAGATTCTCGTCCGG
CGAGCTGCGCCGTCAATGCCAGCGCGGAAGGAAGCGGAACTGCACCGCCG
GAGTCCAACTTGTGTTGTGCTGCGCTAGTCGGGTGCCGCTTGTCCGGTGC
CAGCTGTGTCGACACTGGTGACAATAGCGGTGACAAGACCGTTGCAGGTA
GGGCAGGTCCTGGGGGGGCGGCGGATGGCGTGAACAGCCTGGACGGGTCG
CTGGAAGGGTCGATGTCGACGGGGTCCCTGTCAACGGGAACGAGAAAGTC
CAGAGCCGCGGCGAAGGTGTGA
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