mRNA_Ecto-sp13_S_contig10291.296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE) HSP 1 Score: 230 bits (587), Expect = 6.700e-71 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 Query: 1 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL Sbjct: 94 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 212
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A835Z7P1_9STRA (Cation/H+ exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P1_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.290e-38 Identity = 70/119 (58.82%), Postives = 96/119 (80.67%), Query Frame = 1 Query: 1 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357 I++DP L VF P+LIFVSA++ H+L+R++ QI++LA P V++G LTA F+K+VL YDWDW ++ G++V++TDPVA VALL+E GVS+KL TLIEGESL NDGSA+V+FE+FL Sbjct: 77 INLDPTALFTVFLPVLIFVSAWSMHIHMLQRQIWQILWLAFPAVVVGTALTATFLKYVL-YDWDWLPCLLLGTIVSSTDPVATVALLKEQGVSDKLSTLIEGESLFNDGSALVLFELFL 194
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A7S4DK55_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DK55_9EUKA) HSP 1 Score: 136 bits (342), Expect = 2.390e-37 Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1 Query: 7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354 +DP +L +F P LIF SAF++ FHI++R LGQ + LAGPGV + L AV ++ PY+W W ++VFGS+++ATDPVAVVALL ELGVS+KL TLIEGESL NDG+A V+F V+ Sbjct: 127 IDPHLLLGIFLPALIFESAFSSSFHIIKRELGQALLLAGPGVAISMILAAVVGVYIFPYNWSWWAALVFGSILSATDPVAVVALLRELGVSKKLATLIEGESLFNDGTAYVMFLVW 242
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA) HSP 1 Score: 138 bits (347), Expect = 3.660e-37 Identity = 64/117 (54.70%), Postives = 89/117 (76.07%), Query Frame = 1 Query: 7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357 + P ++ F PIL+F S+F+ HI+ Q++FLAGPGVI+ LTA+F+K+V Y W W L ++FGSM++ATDPVAVVAL ++LGV+++LGTLIEGE L+NDGSAIV+F + L Sbjct: 131 VSPEVILFAFIPILLFESSFSTDVHIIRHEALQVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLGVNQRLGTLIEGEGLMNDGSAIVIFNICL 247
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 142 bits (359), Expect = 4.130e-37 Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1 Query: 7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354 MDP I+ PILIF SAF HI R + Q++ LAGPGV+ + AVF K+V PYDWDWN + FG+M +ATDPVAVVAL++ELGVSE+L LIEGESLLNDG++IVVF VF Sbjct: 112 MDPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVF 227
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: UPI001C7B9F2A (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7B9F2A) HSP 1 Score: 131 bits (330), Expect = 1.380e-36 Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 1 Query: 4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354 ++DP +L VF P L+F S+F+ + H ++R L Q+IFLAGPGV++ +KF PYDW W S++ G +++ATDPVAVVALL++LG S+KL T+IEGES++NDG+AIVV+++F Sbjct: 26 NIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMIFLAGPGVLISTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLTTIIEGESMMNDGTAIVVYQLF 142
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 141 bits (355), Expect = 1.580e-36 Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 1 Query: 7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354 M+P I+ PILIF SAF HI R + Q++ LAGPGV+ + AVF K+V PYDWDWN + FG+M +ATDPVAVVAL++ELGVSE+L LIEGESLLNDG++IVVF VF Sbjct: 45 MNPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVLAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVF 160
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: E3WCX4_EUTHA (Salt overly sensitive 1 short form n=2 Tax=Brassicaceae TaxID=3700 RepID=E3WCX4_EUTHA) HSP 1 Score: 137 bits (346), Expect = 3.180e-36 Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 1 Query: 4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357 ++P +L VF P L+F SAF+ + H ++R LGQ++ LAGPGV++ A +K PYDWDW S++ G +++ATDPVAVVALL+ELG S+KL T+IEGESL+NDG+AIVVF++FL Sbjct: 89 EINPELLLAVFLPALLFESAFSMEVHQIKRCLGQMVLLAGPGVLISTFCLASLVKLTFPYDWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTVIEGESLMNDGTAIVVFQLFL 206
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A836CJL4_9STRA (Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL4_9STRA) HSP 1 Score: 131 bits (330), Expect = 7.490e-36 Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1 Query: 13 PRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357 P++L VF PIL+FVSA+ H+L R++ Q+++LA P VI+ AGLTA F+K+ LPY W W L ++ GS+++ TDPVA VALL+ELGVSE L TL+E SL NDGSA V+F +FL Sbjct: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFL 115
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: UPI001C7AB77F (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7AB77F) HSP 1 Score: 131 bits (330), Expect = 7.680e-36 Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 1 Query: 4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354 ++DP +L VF P L+F S+F+ + H ++R L Q+IFLAGPGV++ +KF PYDW W S++ G +++ATDPVAVVALL++LG S+KL T+IEGES++NDG+AIVV+++F Sbjct: 89 NIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMIFLAGPGVLISTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLTTIIEGESMMNDGTAIVVYQLF 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10291.296.1 >prot_Ecto-sp13_S_contig10291.296.1 ID=prot_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAback to top mRNA from alignment at Ecto-sp13_S_contig10291:956..2361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10291.296.1 ID=mRNA_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10291:956..2361- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10291:956..2361- >mRNA_Ecto-sp13_S_contig10291.296.1 ID=mRNA_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10291:956..2361- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |