Homology
BLAST of mRNA_Ecto-sp13_S_contig10289.295.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE) HSP 1 Score: 147 bits (372), Expect = 3.290e-38 Identity = 110/132 (83.33%), Postives = 112/132 (84.85%), Query Frame = 1 Query: 82 EPPLEGEPGAAPGGGGRRGRRPPQGLGTAADFHDGGKNXXXXXXXXXXXXXXXXXXXXXLLLSRRESSSASKETRRHNPP---GREAQQGVVNRNSFRPLREGPEEEKLQQLLGTNSRSLPEARGRDSLRRD 468
EPPL GEPGAAPGGGGR GRRP GLGTAAD HDGGKN XXXXXXXXXXXXXXXXXXXX L SRRESSSASKETRR NPP GREAQQ +VNRNSFRPLRE PEEEKLQQ L TNSRSLPE R R L+RD
Sbjct: 2 EPPLVGEPGAAPGGGGRGGRRPXPGLGTAADMHDGGKNLXXXXXXXXXXXXXXXXXXXXXL-SRRESSSASKETRRRNPPLQPGREAQQEIVNRNSFRPLREDPEEEKLQQFLRTNSRSLPEDRERGHLQRD 132
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 468 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 468 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462520.9498785-CDS-Ecto-sp13_S_contig10289:5189..5657 | 1681462520.9498785-CDS-Ecto-sp13_S_contig10289:5189..5657 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10289 5190..5657 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10289.295.1 >prot_Ecto-sp13_S_contig10289.295.1 ID=prot_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
ASGKGRGRETPGRGGRDARSARGARGTEPPLEGEPGAAPGGGGRRGRRPP
QGLGTAADFHDGGKNLSRREMLGLSTAEDVRGGGSNLLLSRRESSSASKE
TRRHNPPGREAQQGVVNRNSFRPLREGPEEEKLQQLLGTNSRSLPEARGR
DSLRRD back to topmRNA from alignment at Ecto-sp13_S_contig10289:5190..5657+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10289.295.1 ID=mRNA_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10289:5190..5657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTGGCAAGGGGCGGGGCAGGGAGACTCCAGGACGGGGTGGTCGAGA
TGCTCGATCGGCGAGAGGAGCGAGGGGGACGGAACCCCCGCTCGAGGGAG
AGCCAGGCGCTGCACCGGGTGGAGGCGGTCGACGCGGCCGTCGGCCGCCG
CAGGGCTTGGGCACGGCTGCCGATTTTCATGACGGCGGCAAGAACCTGTC
ACGACGAGAGATGCTGGGCTTGAGCACGGCTGAAGATGTTCGCGGCGGTG
GCAGCAACCTGCTCTTGTCGCGACGGGAGTCGTCGTCGGCTTCGAAGGAG
ACGCGTCGTCACAATCCGCCGGGCCGAGAAGCGCAACAAGGGGTTGTAAA
TCGGAACAGTTTCCGCCCGTTGCGGGAAGGTCCCGAAGAAGAAAAGTTGC
AGCAGTTGCTCGGCACCAACAGCCGGTCGCTACCGGAAGCCCGAGGGCGA
GACAGTCTTCGAAGGGAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10289:5190..5657+ >mRNA_Ecto-sp13_S_contig10289.295.1 ID=mRNA_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10289:5190..5657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTGGCAAGGGGCGGGGCAGGGAGACTCCAGGACGGGGTGGTCGAGA
TGCTCGATCGGCGAGAGGAGCGAGGGGGACGGAACCCCCGCTCGAGGGAG
AGCCAGGCGCTGCACCGGGTGGAGGCGGTCGACGCGGCCGTCGGCCGCCG
CAGGGCTTGGGCACGGCTGCCGATTTTCATGACGGCGGCAAGAACCTGTC
ACGACGAGAGATGCTGGGCTTGAGCACGGCTGAAGATGTTCGCGGCGGTG
GCAGCAACCTGCTCTTGTCGCGACGGGAGTCGTCGTCGGCTTCGAAGGAG
ACGCGTCGTCACAATCCGCCGGGCCGAGAAGCGCAACAAGGGGTTGTAAA
TCGGAACAGTTTCCGCCCGTTGCGGGAAGGTCCCGAAGAAGAAAAGTTGC
AGCAGTTGCTCGGCACCAACAGCCGGTCGCTACCGGAAGCCCGAGGGCGA
GACAGTCTTCGAAGGGAC back to top
|