Homology
BLAST of mRNA_Ecto-sp13_S_contig10287.294.1 vs. uniprot
Match:
A0A6H5KH88_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH88_9PHAE)
HSP 1 Score: 345 bits (884), Expect = 5.620e-117
Identity = 174/187 (93.05%), Postives = 176/187 (94.12%), Query Frame = 1
Query: 1 MSSYDGEERLH---KGSGAKRGSEDEGAIATASLQVLCAAVTEPGPNLLATSAGPTMYEVVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGGSRAVGHLEERRRGLQAYFSQVLDEQRELWDSSADIKAFFSPGPPTSYSAALSRRRSEQLKEVK 552
MSSY GE RL KGSGAKRGSEDEGAIATASLQVLCAA TEP PNLLATSAGPTMYE VYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAII KVLSSCQGCREGGSRAVGH+EERRRGLQAYFSQVLDEQRELWDSSADI+AFFSPGPPTSYSAALSRRRSEQLKE K
Sbjct: 1 MSSYGGENRLRSPRKGSGAKRGSEDEGAIATASLQVLCAAATEPRPNLLATSAGPTMYEAVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAIIGKVLSSCQGCREGGSRAVGHIEERRRGLQAYFSQVLDEQRELWDSSADIEAFFSPGPPTSYSAALSRRRSEQLKEEK 187
BLAST of mRNA_Ecto-sp13_S_contig10287.294.1 vs. uniprot
Match:
D8LFA4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA4_ECTSI)
HSP 1 Score: 315 bits (808), Expect = 2.000e-105
Identity = 163/187 (87.17%), Postives = 167/187 (89.30%), Query Frame = 1
Query: 1 MSSYDGEERLH---KGSGAKRGSEDEGAIATASLQVLCAAVTEPGPNLLATSAGPTMYEVVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGGSRAVGHLEERRRGLQAYFSQVLDEQRELWDSSADIKAFFSPGPPTSYSAALSRRRSEQLKEVK 552
MSSY GEE L KGSGAKRGSEDEG I TASL+VLCAA PN T+ GPTMY+V YTRGGWIWRTSHRYSDWLSLKERL+ADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGG RAVGHLEERRRGLQAYFSQVLDEQRELWDSSADIKAFFSPGPPTSYSAALSRRRSEQLKE K
Sbjct: 1 MSSYGGEESLRSPRKGSGAKRGSEDEGIIGTASLEVLCAAK----PN---TNTGPTMYDVAYTRGGWIWRTSHRYSDWLSLKERLQADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGGGRAVGHLEERRRGLQAYFSQVLDEQRELWDSSADIKAFFSPGPPTSYSAALSRRRSEQLKEEK 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10287.294.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 5.62e-117 / Id = 93.05 Expect = 2.00e-105 / Id = 87.17 Sequence A0A6H5KH88_9PHAE D8LFA4_ECTSI
Match Name E-value Identity Description
A0A6H5KH88_9PHAE 5.620e-117 93.05 PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LFA4_ECTSI 2.000e-105 87.17 PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0
Start 1
Model size 552
Hectar predicted targeting category other localisation
Exons 4
Ec32 ortholog description Phox homologous domain
Ec32 ortholog Ec-01_004240.1
Cds size 552
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462520.8841004-CDS-Ecto-sp13_S_contig10287:1966..2157 1681462520.8841004-CDS-Ecto-sp13_S_contig10287:1966..2157 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10287 1967..2157 +
1681462520.899167-CDS-Ecto-sp13_S_contig10287:4615..4733 1681462520.899167-CDS-Ecto-sp13_S_contig10287:4615..4733 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10287 4616..4733 +
1681462520.909249-CDS-Ecto-sp13_S_contig10287:4995..5094 1681462520.909249-CDS-Ecto-sp13_S_contig10287:4995..5094 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10287 4996..5094 +
1681462520.9190354-CDS-Ecto-sp13_S_contig10287:5650..5794 1681462520.9190354-CDS-Ecto-sp13_S_contig10287:5650..5794 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10287 5651..5794 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10287.294.1
>prot_Ecto-sp13_S_contig10287.294.1 ID=prot_Ecto-sp13_S_contig10287.294.1|Name=mRNA_Ecto-sp13_S_contig10287.294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MSSYDGEERLHKGSGAKRGSEDEGAIATASLQVLCAAVTEPGPNLLATSA GPTMYEVVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQK EDVGAIIVKVLSSCQGCREGGSRAVGHLEERRRGLQAYFSQVLDEQRELW DSSADIKAFFSPGPPTSYSAALSRRRSEQLKEVK back to top mRNA from alignment at Ecto-sp13_S_contig10287:1967..5794+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10287.294.1 ID=mRNA_Ecto-sp13_S_contig10287.294.1|Name=mRNA_Ecto-sp13_S_contig10287.294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10287:1967..5794+ (Ectocarpus species13 EcNAP12_S_4_19m)ATGAGTTCCTACGATGGCGAAGAAAGGCTTCACAAGGGTAGCGGCGCGAA
GCGAGGGAGCGAAGATGAAGGGGCCATCGCGACCGCATCCCTACAGGTCC
TGTGCGCAGCTGTCACCGAGCCCGGACCAAACCTACTTGCCACCAGCGCT
GGACCAACGATGTACGAGGTTGTCTACACCAGAGGAGGGTG GTGAGTGCC
CAGGAGCCAGGAGTGTGTCGTGTAGCGCCGTCGGTAAATGGTACTCGCAT
GACTAGCAAACGCTGCCGCTAGGATCGGTGTCCCGATATGAAGATGTTCA
TTCATCGCGCCGTGTGTCGTTGTGGCATGGGTCGGTCGGCCTTGGGCAAT
CATTTGCCGCCTGATTCCCACACACCTTCAAAGTCTTTCGGGCCGTTGGT
CTGTTTTCACCGCATGGACCAGGCAGGAGTAAGGGGAGTCGGAGGATATT
GTGGCTGGGAGGAACCGCAGCTAATACAGCAGCTTACCAGGTGCTGCGCT
TGTATCTTATCAGTGCAGCTTTTGAATCCATGCTTCGATATTTTTTCGCG
ACAGGAGTGCGTGCGGCCGTTAGGGTCGTTGGGGACGGAGACATGCTATT
CACACTTCCCTTCTGGAGTCAAGTAAATATTTTAATATTGTTGACAAAAG
ACCTCTGATGCACATACACCCTCGCCACTTATGGCCGATACACCTGACAC
ATTTATCTACGTGTGGGTATCCAGTGCATTGGACTACGTAACATCCACAA
ATAGCTGTGCTTCAAGTATTAAGCTTTTCGACTCGCAATCGCTCCCAAAC
TCCAGACGACGCACAGGGCGGTAGTTTTTGTTGCGAACTGCTACTTTGAA
GTCGTGTGTCGTGCGGTTTGCTGTTTTGTCTTGACATTTAAAACCGTGAA
AACCGTTCACTATTTTAAATGTATCATCCGTTCTGCTGTTCCAACTGCGC
AGACACCTTCCCGTGACCACTGACTACTCCAACGAGCAAAGAGGGCACAC
GAAGAACGCGCCCGTTCGGTAGAAGAGAACACGTGGTTGGTTAGCTAGAC
AGCCACAGGGTTGGATTTTCACGAAACCGTAGGGATGGTGTTGTGTCCAT
TTCTTCCAAAAACACGAACCCGCCCACACCAACACCTTTTAGGAATGAAA
CATAATCTCACAGAAAGACTACCCGCTTGAGATGTAACGTAGTCGAAAGA
CCTTTGTACAACATCAGCTTCACAGTATTTGGTTTCCCCACTCTGATCAA
CGACCTCTGTTGTATAAACAACAAGGGTTGCCCAAAATCAGGGCTTCTTG
GCGCGTTCAGGTTGGCGCCTATTTTTACAGCACATACTACTTCAAGTATT
ATGTTTGATAGGCCGAGGGAATCGCCTTGGACTTTCGTTGTGCCGGCGAA
GCTCACAAAACCCTTTCTCTTCTTGTCGCAAAGGCGGGCTGCACATCTTG
CGATGTCGTCAACCTTATGCCTCCTCCGACGTCCCTCGGAGTGTACTCGA
AGTGTACTTTGTAATTTTTAATTAATGGTTGAACAAATATTTTCAGAACC
CCTTGACCCTGAAGGATTTCGTAGAAGACAATCGTTGGTGTTCCTCTCGA
TAAGGTAAGGTGTTCGTTTGAATGTTTGAACTGAGTCGGCGCCGTTGGAT
GTACCGAAGGTCAACATGTTGCACCTCAATGAAGGGAAGGAGACACGCCA
GAGCAGACCGGTGTCGTCGCCGCCCACAAAGACACGGCGGAACAGAATTG
CCGCTCAAAACAGAAGTAAGTAGTGTCGGGCGTCCATCGAAAAGGATGAA
AGAACGCCTTGAAAAGATTTATATATGTACACAGAGTAGTGCCAAACGAT
GTACAGTTAACTACGATGAGATAGGCAATGAGTGGTGGTTTTTGTTCGAT
GCCCACAGAGCGCCGTAACCTGGAAACTGTACTCGAAAATTGATAGGAGG
TGGTCAAGTAGAACGGAGACTGCTGATTTGCGGATGCCGAGAAATGTGTC
CCGCCGCGTTTTTCGTTCGGTAAATGGTTGAACTTGCAAAACCACCAAAA
GAAAGATTGGAAGGAGCAGAGAAGCGTAGTTGTGACTCTGAAGCTAAGCG
CCAGCGCGCCAAATAGAGCGGCTCGTTTGGGAGAGCTGCTTGTATGGGCG
TGCGGGACGCCTTCGTGATCAAACGTACAGCTCTTGGCAGCTCGAACGAT
ATAACGGACCAGCGGACGCGGTTTGAGAGTATGGCTGATGGTGCCCTCTA
CTCCTGTAGAATTCCGTGATAGGTACGCAACACGCCTGTGCGAACAGGTT
GAGGGCAATAGTGTGTCAATGCAGAATACGGTATAAGTTGTTGTTGTTAT
TTTCGTGGTGAGACGCGAACTACATAAACTTTTCAGTGTATTGCACGAGG
TGAAGGACTTGATCGGAAGGAGGGGAGACGCTTTCAGGAAGTTCGGGGAG
GCGTGTTTCCTTGTTCTGCGCACCCCCGTGAGATTCACATACTTTTTTGT
GCCCAAAAACACGTTTTTCAAAAAATGTTCCCGCGTAGTTTACGACCGCA
GTGTTAGCATTCCATTCAAAACTGCTTTTGTCCATGCCCTAACTCCTCTT
GCTTGTTCTGTTGTTGTTGGCGACGTTGTGATGGGTGGTGTGTGGAAAGG
ATCTGGCGCACCTCCCACCGCTACAGCGACTGGCTTTCCCTAAAGGAGCG
CCTTCGAGCAGACTTCGGCAAAAGAAATCTTCCGGACGACGAGCTGTTTC
CTCAGAAGGAGGACGTG GTGAGATCGCGGCGAAACACGCAGCAGTCGCAG
CCTTGGCGGTGCCCGTGCGGTGCGGCACAAGTATTGGGGAAACAGTTCGC
TGGCATTGTGTATGCGCGTGCCGTAGTCCAGGGTGCCGCCAAATGATTGT
TTCAAGCCGCTCAAGTGTGAAGATCGTCAGTCGTCCTTTGTCCAAGTACG
ACAGCGACCGCCACAATAACGACCACCCCTCTTGAATATCTCGTCCTGTT
TTTTGGCTCGCCCGGTCGCGTTATTGTAGGGTGCTATCATCGTGAAAGTG
CTGTCTTCTTGTCAGGGGTGCCGGGAGGGCGGCAGCCGCGCAGTGGGACA
CCTCGAGGAGCGACGCCGCGGCCTGCAG GTGAAAGCGCTGAAGCTTTGAA
ATGTCGTCAAGCTCATGAGAGCGTGGTTTGAACGTTGTCGACGAAATCTC
CGCTAACTCGTGGGCATGGGTATCTAAAGCAGTCTGGGTGGCCTTGACGC
CGTGTCCACCCGATGCCTGTGATGAGCTGTCTCGAGCGTTGCCACGGCTT
CGGCTATGACTGGTCCTAGAGTATTGTAGGGCGACCATGTTCTACCACGT
GCCGAATTTCTATTGACAGAGTGACGCGATTCGAGTACCGGGGGTTGTCC
TTGTTGTTGTTTATATCGAACCACCAACAAACGGTGTCGTTCGACCAGCA
CATTCTTGCCTCTGGTTTTAACCGTCTCAAGTTTTAGCTCTAGTTTCCCA
TCCACTGCCAGCAAGTAAAAAGAAAGGGCTGGGTGGAACACTGCCACAGC
AGGAGAACAGGCAATAACCACTCCACTACTCGTGTGGCGGTCGAGAGAGG
CGCAGTAAGCTGCGTGTGTGTATGCGCGTGCTTGCTTTTTTGCTCCTCGG
CCAACCCGCGTGCGTGTCTCTGTTGCTGCATCAGGCCTACTTCTCACAGG
TTCTAGATGAACAGAGAGAGCTCTGGGACTCGAGCGCCGACATCAAGGCC
TTCTTTTCCCCCGGCCCGCCCACGAGCTACAGCGCGGCTCTCTCGCGACG
GAGGAGTGAGCAACTCAAGGAGGTGAAG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10287:1967..5794+
>mRNA_Ecto-sp13_S_contig10287.294.1 ID=mRNA_Ecto-sp13_S_contig10287.294.1|Name=mRNA_Ecto-sp13_S_contig10287.294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10287:1967..5794+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGAGTTCCTACGATGGCGAAGAAAGGCTTCACAAGGGTAGCGGCGCGAA GCGAGGGAGCGAAGATGAAGGGGCCATCGCGACCGCATCCCTACAGGTCC TGTGCGCAGCTGTCACCGAGCCCGGACCAAACCTACTTGCCACCAGCGCT GGACCAACGATGTACGAGGTTGTCTACACCAGAGGAGGGTGGATCTGGCG CACCTCCCACCGCTACAGCGACTGGCTTTCCCTAAAGGAGCGCCTTCGAG CAGACTTCGGCAAAAGAAATCTTCCGGACGACGAGCTGTTTCCTCAGAAG GAGGACGTGGGTGCTATCATCGTGAAAGTGCTGTCTTCTTGTCAGGGGTG CCGGGAGGGCGGCAGCCGCGCAGTGGGACACCTCGAGGAGCGACGCCGCG GCCTGCAGGCCTACTTCTCACAGGTTCTAGATGAACAGAGAGAGCTCTGG GACTCGAGCGCCGACATCAAGGCCTTCTTTTCCCCCGGCCCGCCCACGAG CTACAGCGCGGCTCTCTCGCGACGGAGGAGTGAGCAACTCAAGGAGGTGA AG back to top