mRNA_Ecto-sp13_S_contig10281.291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10281.291.1
Unique Name	mRNA_Ecto-sp13_S_contig10281.291.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Match: A0A6H5L0G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G8_9PHAE)

HSP 1 Score: 515 bits (1326), Expect = 2.420e-175
Identity = 264/307 (85.99%), Postives = 274/307 (89.25%), Query Frame = 1

Query:    1 RKQGTASSSLDRRAKSFAIRSSRXXXXXXXXXXAPRASRDCSRPRASLDSCKFEANRGSKESVLDSEYLHARQREGMVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCFAPQTRRGGCDY--RGNRDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHAEPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRSSRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQRRAELLGKMPPTTLRAKIAWMEKPGDPQYR 915
            RKQGTASSSLDRR KS AIRSSR          APRASRDC+RPRASLD CKFEANRGSKESVLD+ YLHARQREGMVGASLRSCGGEERIGEKE EGKRPSCFD  H+LNGTCTSDVKDEEEGCFAPQTRRG CDY  + NRDH+ERI AKE DVN ENQQRERWSTRGRVLWA HAEPAARAT  DSR++PRATMQSCSQPV+RPY GLYARSLQANGIEPA  RSSRCSC TT+NRQIDGSVLWPDREN ARTRSPVDGLPDRLEAGRVLDSF+RRAELLGKMPPTTLRAK AWMEKPGDPQYR
Sbjct:  318 RKQGTASSSLDRRVKSTAIRSSRSERSEKS---APRASRDCARPRASLDPCKFEANRGSKESVLDNGYLHARQREGMVGASLRSCGGEERIGEKEEEGKRPSCFDSTHHLNGTCTSDVKDEEEGCFAPQTRRGDCDYHRKWNRDHNERITAKEDDVNEENQQRERWSTRGRVLWATHAEPAARATCTDSRIYPRATMQSCSQPVLRPYHGLYARSLQANGIEPAKIRSSRCSCHTTDNRQIDGSVLWPDRENAARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQYR 621

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BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Match: D7FJI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI5_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 1.540e-173
Identity = 266/308 (86.36%), Postives = 276/308 (89.61%), Query Frame = 1

Query:    1 RKQGTA-SSSLDRRAKSFAIRSSRXXXXXXXXXXAPRASRDCSRPRASLDSCKFEANRGSKESVLDSEYLHARQREGMVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCFAPQTRRGGCDYRGN--RDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHAEPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRSSRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQRRAELLGKMPPTTLRAKIAWMEKPGDPQYR 915
            RKQGTA SSSLDRRAK+ AIRSSR          APRASRDCSRPRASLD CKFEANRGSKESVLD+ YLHARQREGMVGASLRSC GEERIGEKEAEGKRPSCFD  H+LNGT TSDVKDEEEGCFAPQTRRG CDYRG   RDHSERI AK+KDVN EN  RERWSTRGRVLWA HAEPAARATS D+R+FPRATM+SCSQPVVRPY GLYARSLQANGIEPA+FRSSRCSC TTE+RQIDGSVLWPDREN ARTRSPVDGLPDRLEAGRVLDSF+RRAELLGKMPPTTLRAK AWMEKPGDPQYR
Sbjct:  329 RKQGTAASSSLDRRAKNTAIRSSRSERPEQS---APRASRDCSRPRASLDPCKFEANRGSKESVLDNGYLHARQREGMVGASLRSCAGEERIGEKEAEGKRPSCFDSTHHLNGTLTSDVKDEEEGCFAPQTRRGDCDYRGKWVRDHSERITAKKKDVNEENHHRERWSTRGRVLWATHAEPAARATSTDARIFPRATMRSCSQPVVRPYNGLYARSLQANGIEPAHFRSSRCSCHTTEHRQIDGSVLWPDRENAARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQYR 633

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5L0G8_9PHAE	2.420e-175	85.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FJI5_ECTSI	1.540e-173	86.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10281:4184..5916-
coding sequence from alignment at Ecto-sp13_S_contig10281:4184..5916-

protein sequence of mRNA_Ecto-sp13_S_contig10281.291.1

>prot_Ecto-sp13_S_contig10281.291.1 ID=prot_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
MVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCF
APQTRRGGCDYRGNRDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHA
EPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRS
SRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQR
RAELLGKMPPTTLRAKIAWMEKPGDPQYRLRESRDGLLSSFSGTSPDRRF
AMYASCAGKAYVRPSKVEATTLLAASSGAWDKPFGPSPTKHSVWARREIE
EEVPLFDRRKVADTGGTSFAKASPCNCQIRGG*

mRNA from alignment at Ecto-sp13_S_contig10281:4184..5916-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10281.291.1 ID=mRNA_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1733bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10281:4184..5916- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAAGCAAGGGACTGCAAGCTCATCGTTAGATCGACGGGCAAAAAGCTT
TGCAATCAGAAGCTCTAGGTCAGAGAGATCAGAGAGATCGGAGCAGAGTG
CACCGAGGGCAAGCAGAGATTGTTCTCGTCCAAGGGCAAGTCTCGACTCG
TGCAAATTTGAAGCTAATAGAGGGAGCAAGGAGAGCGTTCTAGACAGCGA
GTACCTGCACGCTCGACAGCGTGAGGGAATGGTCGGGGCATCGCTGAGAA
GCTGCGGGGGTGAGGAACGAATTGGAGAAAAAGAGGCGGAAGGGAAACGA
CCGAGTTGCTTCGATCACATGCACAATTTGAACGGGACTTGTACCTCAGA
TGTAAAGGACGAAGAAGAGGGATGCTTTGCCCCCCAAACGAGGCGTGGTG
GCTGCGATTACCGCGGGAATCGTGACCACAGCGAGAGGATCATGGCGAAA
GAGAAGGATGTAAATGGGGAGAATCAACAGCGCGAGCGGTGGAGCACCAG
GGGAAGGGTGTTATGGGCTGCACACGCAGAGCCTGCAGCGCGAGCGACTT
CCATCGACTCTAGAATGTTCCCTCGAGCGACGATGCAATCGTGTTCGCAG
CCTGTTGTTCGGCCATACCGTGGTCTTTACGCGAGGTCTCTTCAGGCCAA
CGGCATCGAGCCTGCCAACTTCCGGTCGTCACGCTGCTCCTGCCGTACTA
CCGAGAACAGACAGATTGATGGCTCAGTCCTTTGGCCTGATCGGGAGAAC
GAGGCGCGGACTCGGTCACCGGTCGACGGCCTTCCCGACAGGCTCGAAGC
AGGTCGTGTGTTGGACTCGTTCCAACGAAGAGCAGAGCTGCTGGGCAAGA
TGCCGCCTACAACGCTGCGCGCCAAGATCGCTTGGATGGAAAAACCGGGC
GATCCCCAGTACAGGTTTGTCTACGGAACAACGGCGGCGAGGAGAGATGC
ACGTCCATGCCGTGACGCTGGCGTCCATATTGCATTATATTCTTCGCTGT
GTAGAAATGTGCATGTCACGCAGAGTCTTTGTCCACTGCTCAAACGATAC
GATGCCCGTTGGTCGACGTCTTGAGATCATCGATTAAAAAAACGGAGTTG
TCGCCGGTTGATTTTTGTTTTCGCACACGTCAAGACTCCGGAGGAAGACG
AGCATGTCGGCTTTATTCGCACTAAACTACATTACCACTCCCGTATCCGC
CGTGGCCTCATAGCTATGTTCGTTCTCGTTCTAACCTTTCTCCGACAATT
TTGCACAATCAAGGCTACGGGAGAGCCGGGACGGACTGCTTTCCTCGTTC
AGCGGGACTTCCCCTGACCGGCGGTTCGCCATGTACGCTTCATGCGCCGG
GAAAGCCTATGTCCGCCCCTCCAAGGTAGAGGCGACGACCTTACTGGCCG
CATCATCAGGCGCCTGGGACAAGCCATTCGGGCCAAGTCCGACGAAGCAC
TCTGTTTGGGCGAGAAGAGAAATTGAGGAGGAGGTGCCACTCTTTGATCG
ACGGAAAGTGGCCGACACTGGGGGTACGTCCTTCGCCAAGGCTTCCCCTT
GCAACTGCCAAATACGAGGGGGTTGATCATGAGGGATACATCACAAGCCT
TCAACCGCAACCTCTGTGCGCTGAATCTTGCGGGCACACCGCGCGTGCCG
ATACTAAATGTAGTGTGTCATGTAAGGGGAACTATATCCCATCTGGAGGG
GGATCGGCGCGTTTCATCGGCCGTCCTGCGATT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10281:4184..5916-

>mRNA_Ecto-sp13_S_contig10281.291.1 ID=mRNA_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10281:4184..5916- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGGGCATCGCTGAGAAGCTGCGGGGGTGAGGAACGAATTGGAGA
AAAAGAGGCGGAAGGGAAACGACCGAGTTGCTTCGATCACATGCACAATT
TGAACGGGACTTGTACCTCAGATGTAAAGGACGAAGAAGAGGGATGCTTT
GCCCCCCAAACGAGGCGTGGTGGCTGCGATTACCGCGGGAATCGTGACCA
CAGCGAGAGGATCATGGCGAAAGAGAAGGATGTAAATGGGGAGAATCAAC
AGCGCGAGCGGTGGAGCACCAGGGGAAGGGTGTTATGGGCTGCACACGCA
GAGCCTGCAGCGCGAGCGACTTCCATCGACTCTAGAATGTTCCCTCGAGC
GACGATGCAATCGTGTTCGCAGCCTGTTGTTCGGCCATACCGTGGTCTTT
ACGCGAGGTCTCTTCAGGCCAACGGCATCGAGCCTGCCAACTTCCGGTCG
TCACGCTGCTCCTGCCGTACTACCGAGAACAGACAGATTGATGGCTCAGT
CCTTTGGCCTGATCGGGAGAACGAGGCGCGGACTCGGTCACCGGTCGACG
GCCTTCCCGACAGGCTCGAAGCAGGTCGTGTGTTGGACTCGTTCCAACGA
AGAGCAGAGCTGCTGGGCAAGATGCCGCCTACAACGCTGCGCGCCAAGAT
CGCTTGGATGGAAAAACCGGGCGATCCCCAGTACAGGCTACGGGAGAGCC
GGGACGGACTGCTTTCCTCGTTCAGCGGGACTTCCCCTGACCGGCGGTTC
GCCATGTACGCTTCATGCGCCGGGAAAGCCTATGTCCGCCCCTCCAAGGT
AGAGGCGACGACCTTACTGGCCGCATCATCAGGCGCCTGGGACAAGCCAT
TCGGGCCAAGTCCGACGAAGCACTCTGTTTGGGCGAGAAGAGAAATTGAG
GAGGAGGTGCCACTCTTTGATCGACGGAAAGTGGCCGACACTGGGGGTAC
GTCCTTCGCCAAGGCTTCCCCTTGCAACTGCCAAATACGAGGGGGTTGA