mRNA_Ecto-sp13_S_contig1028.288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1028.288.1
Unique Name	mRNA_Ecto-sp13_S_contig1028.288.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: D8LIF1_ECTSI (NUO10 homolog, NADH dehydrogenase (Ubiquinone) subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF1_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 1.970e-148
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 1

Query:    1 PGRGLAIAMQQTRSTAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            P RGLAIAMQQTR+TAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK
Sbjct:    6 PRRGLAIAMQQTRATAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 225

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7S2BKW3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKW3_9STRA)

HSP 1 Score: 323 bits (828), Expect = 4.290e-104
Identity = 153/173 (88.44%), Postives = 165/173 (95.38%), Query Frame = 1

Query:  142 SELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+LT   +V+ LM+  +GGVE+VV+KVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+K NKSLLL+L+K
Sbjct:   29 SDLTARSSVNSLMEDPQGGVEYVVAKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKANKSLLLKLRK 201

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A835ZJG3_9STRA (NUO10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG3_9STRA)

HSP 1 Score: 323 bits (827), Expect = 8.280e-104
Identity = 162/216 (75.00%), Postives = 184/216 (85.19%), Query Frame = 1

Query:   16 AIAMQQTRSTAAVYRAPVAL-LHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            A+ M Q+++ +A+  AP A  +H+T + +  S              ++ E  DQL+Q  KG VE+VVSKVD+LVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFG+VFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVV+GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+KGN+SLLLRL+K
Sbjct:    9 ALCMLQSQAPSALRAAPAARSIHSTHRTESLSP-------------SKVETPDQLLQT-KGKVEYVVSKVDELVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGLVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVKGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKGNRSLLLRLRK 210

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7S2RSY8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSY8_9STRA)

HSP 1 Score: 321 bits (822), Expect = 6.130e-103
Identity = 150/174 (86.21%), Postives = 166/174 (95.40%), Query Frame = 1

Query:  139 SSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+ELT+  NV+ LM+  +GG EFVV+KVDDLVNWAR+GSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+K +K+LLL+++K
Sbjct:   45 STELTQHNNVNSLMENPRGGAEFVVAKVDDLVNWARRGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKSDKTLLLKVRK 218

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: B8C955_THAPS (Oxidored_q6 domain-containing protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C955_THAPS)

HSP 1 Score: 320 bits (821), Expect = 8.070e-103
Identity = 158/186 (84.95%), Postives = 168/186 (90.32%), Query Frame = 1

Query:  121 DMRKPTSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            D    T+S LTR + VD+L+  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLL+L+K
Sbjct:   32 DKASSTTSSLTRLDGVDELLT-GTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 216

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A6V1PZF2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PZF2_HETAK)

HSP 1 Score: 320 bits (819), Expect = 1.350e-102
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 1

Query:  130 KPTSSELTRAENVDQLMQ-QGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            K   S+L +A++VD LM  + +  VEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+K NKSL LRLKK
Sbjct:   34 KRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 211

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: K0S487_THAOC (Oxidored_q6 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S487_THAOC)

HSP 1 Score: 320 bits (820), Expect = 1.400e-102
Identity = 157/181 (86.74%), Postives = 167/181 (92.27%), Query Frame = 1

Query:  136 TSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            T+S LTR E VD+++  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLL+L+K
Sbjct:   43 TTSSLTRLEGVDEVLT-GMGGVPVNNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 222

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A482S463_9ARCH (NADH-quinone oxidoreductase subunit B n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482S463_9ARCH)

HSP 1 Score: 318 bits (815), Expect = 1.430e-102
Identity = 149/172 (86.63%), Postives = 161/172 (93.60%), Query Frame = 1

Query:  145 ELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            +L + ENV +LM Q    +E+VVSK+DD+VNWARKGS+WPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAE LLYG+LQLQKK+K NKSLLLRL+K
Sbjct:    2 QLVKKENVGELMGQAHSNLEYVVSKIDDVVNWARKGSMWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEGLLYGMLQLQKKVKSNKSLLLRLRK 173

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7R9W5P5_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9W5P5_9STRA)

HSP 1 Score: 319 bits (817), Expect = 2.690e-102
Identity = 156/181 (86.19%), Postives = 167/181 (92.27%), Query Frame = 1

Query:  136 TSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            T+S LTR + VD+++  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL+GLLQLQKKIKGNKSLLLRL+K
Sbjct:   32 TTSSLTRLDGVDEILT-GTGGVPVENNVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGLLQLQKKIKGNKSLLLRLRK 211

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BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A4D9DG66_9STRA (Oxidored_q6 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG66_9STRA)

HSP 1 Score: 318 bits (816), Expect = 6.620e-102
Identity = 154/175 (88.00%), Postives = 167/175 (95.43%), Query Frame = 1

Query:  139 SSELTRAEN-VDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+E+T+A   VDQL++  K GVE+VVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAA+RYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+KGNK LLL+L+K
Sbjct:   54 STEVTKAAGGVDQLLKT-KNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

0


Match Name	E-value	Identity	Description
D8LIF1_ECTSI	1.970e-148	99.09	NUO10 homolog, NADH dehydrogenase (Ubiquinone) sub...	[more]
A0A7S2BKW3_9STRA	4.290e-104	88.44	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835ZJG3_9STRA	8.280e-104	75.00	NUO10-like protein n=1 Tax=Tribonema minus TaxID=3...	[more]
A0A7S2RSY8_9STRA	6.130e-103	86.21	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
B8C955_THAPS	8.070e-103	84.95	Oxidored_q6 domain-containing protein n=2 Tax=Thal...	[more]
A0A6V1PZF2_HETAK	1.350e-102	88.20	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
K0S487_THAOC	1.400e-102	86.74	Oxidored_q6 domain-containing protein n=1 Tax=Thal...	[more]
A0A482S463_9ARCH	1.430e-102	86.63	NADH-quinone oxidoreductase subunit B n=2 Tax=cell...	[more]
A0A7R9W5P5_9STRA	2.690e-102	86.19	Hypothetical protein n=2 Tax=Bacillariophyta TaxID...	[more]
A0A4D9DG66_9STRA	6.620e-102	88.00	Oxidored_q6 domain-containing protein n=2 Tax=Mono...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	431.0
Seed ortholog evalue	3.2e-118
Seed eggNOG ortholog	2880.D8LIF1
Preferred name	nduf-7
Model size	1939
KEGG rclass	RC00061
KEGG ko	ko:K03940,ko:K16911
KEGG TC	3.D.1.6
KEGG Reaction	R11945
KEGG Pathway	ko00190,ko01100,ko01110,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map01110,map04714,map04723,map04932,map05010,map05012,map05016
KEGG Module	M00143
Hectar predicted targeting category	other localisation
GOs	GO:0000302,GO:0002118,GO:0002121,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0007610,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048856,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051704,GO:0051705,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099174,GO:1901135,GO:1901360,GO:1901564,GO:1901700,GO:1902494,GO:1990204,GO:2000331
Exons	6
EggNOG free text desc.	quinone binding
EggNOG OGs	COG0377@1,KOG1687@2759
Ec32 ortholog description	NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
Ec32 ortholog	Ec-18_003900.1
EC	1.6.5.3,1.6.99.3,3.6.4.13
Cds size	639
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03036

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1028.288.1	prot_Ecto-sp13_S_contig1028.288.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1028 6772..12687 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462520.1913188-UTR-Ecto-sp13_S_contig1028:5495..6771	1681462520.1913188-UTR-Ecto-sp13_S_contig1028:5495..6771	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1028 5496..6771 -
1681462520.2758064-UTR-Ecto-sp13_S_contig1028:12687..12711	1681462520.2758064-UTR-Ecto-sp13_S_contig1028:12687..12711	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1028 12688..12711 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462520.2071202-CDS-Ecto-sp13_S_contig1028:6771..6918	1681462520.2071202-CDS-Ecto-sp13_S_contig1028:6771..6918	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 6772..6918 -
1681462520.2186172-CDS-Ecto-sp13_S_contig1028:9139..9226	1681462520.2186172-CDS-Ecto-sp13_S_contig1028:9139..9226	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 9140..9226 -
1681462520.2290208-CDS-Ecto-sp13_S_contig1028:9963..10047	1681462520.2290208-CDS-Ecto-sp13_S_contig1028:9963..10047	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 9964..10047 -
1681462520.238176-CDS-Ecto-sp13_S_contig1028:10753..10896	1681462520.238176-CDS-Ecto-sp13_S_contig1028:10753..10896	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 10754..10896 -
1681462520.2478855-CDS-Ecto-sp13_S_contig1028:11189..11277	1681462520.2478855-CDS-Ecto-sp13_S_contig1028:11189..11277	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 11190..11277 -
1681462520.2650201-CDS-Ecto-sp13_S_contig1028:12597..12687	1681462520.2650201-CDS-Ecto-sp13_S_contig1028:12597..12687	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1028 12598..12687 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1028:5496..12711-
coding sequence from alignment at Ecto-sp13_S_contig1028:5496..12711-

protein sequence of mRNA_Ecto-sp13_S_contig1028.288.1

>prot_Ecto-sp13_S_contig1028.288.1 ID=prot_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MQQTRSTAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQ
LMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRY
DLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMG
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI
KGNKSLLLRLKK*

mRNA from alignment at Ecto-sp13_S_contig1028:5496..12711-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1028.288.1 ID=mRNA_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1028:5496..12711- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGGCGGGGGCTCGCGATCGCGATGCAACAAACCCGCTCCACCGCCGC
CGTCTACCGCGCTCCCGTGGCCCTCCTCCACACCACGGACAAGAAGCAGG
AGCAGTCCAGCAAGGTTGGTTCGTGATACGGTAGACGGGAAGAACAGAGC
ATGGGTCCGTTCTCGTCGTCTTGACTATTTTCCTTTCCTCGGCACCGCAG
TGGCACAACAACTGCAAGCATGTCATCTGCCCTCGCGCAAGCGGTCGGCT
GCGCAGTCGGCTGCTAACGACAAGAGCAGGTGACACACAGGTTAGGCCTA
TTCCCATCGACCCCCCAAAGAAACCGAATCGGTGACAACAATTCCCCAAT
CGGACAATAAATAAATCCGTGCGTTTATTGCTTGTTCTTATCATCATGTC
ACCGTAAAAAAACGTTTCTTGGTGCTGAATGCACGCCTCTGTTGGCACAC
AACAGGTCAAATCGACTTTGCTCACTGTGGAGCGGTGGTCCAAGCACAAA
AAAGAACGCGGCCACAGAGGACAACACACTTGTAAAGACCCTGTCCACCC
GGCCTGTTGTTTTCAGTACAGGAGGCAGGAAGCAGTGTCGCAAACTGGGT
GTTGTTGGCGACTTCCTCAAGTCCTCCCGCTCATTTTGCCCGTGGTGACC
CAAGTGTGACAATCTTTTTTCACCACTCCATCTCGAAAGCTAGATGACCT
TATCAATCATAGAGCGGCGGCGGCGCTCAGAGTCAGTATCATATGCACGA
CCAATCCGAAAGAAGTAGCGTGTCGGAGACCTTATTGCTCCACTGCTGCG
TGGTGCCGTGGATTTGCCTTGCTGTGTCCGACCAAAAACGGGTCATCTCC
CCGCATTTTTTCAAACGGCAGTTTGGTGATGTGGCAGACATCACTCACAC
ACCTTCTTGAGCAGCACCCAAACTCCAATACCCACGAAGCAGCACGGCGC
CGGGAGTGAGGATCATGTAGACAGCCGAACAGAAGGAATCAGCGCGTTGG
AGGCATCGGCGCTGCTGCTGCGCTCACTCTACTGTATCCGTGTTTGTCGT
GTGTGATGGAAAATATCCCCGCCCGTCAACAGAGGCAGTTGAGACGAGAG
GACCATGCAATGACTCGGTTTGGACAAACAAAGACCTGAACGCGGCTTCT
ACCGCTTCTCTTTCTTTGAAACAGGCCTGGACATAAGTCTAGCATTCTTG
CCAGCACTCTAAGTGGTGCTAGCGCGGTGCGCCTGCCCGGTTCGTCAGTC
AAGGTCCCGGATTTTTTTACGTTTCTGTGAATGGAGCAAGCACGAAAAAT
CGTCGACATGCCTCCCTGCATTTTTTTTAAGGCTCGTCTCGGAACCTTTT
CCGTGACTTTTTCTTCTGATAGGAGTGAGCCTTGCCCCCCGCCCTCACCA
TGTGTCGTTTTTTTTATGGATATGCTCCATGCAGGTACAGGACATGCGCA
AGCCGACCAGCTCTGAGCTGACGAGAGCAGAGAATGTGGACCAGCTCATG
CAGCAGGGAAAGGGCGGAGTTGGTGAGCAAATATATGAATCACGGCGAGG
GGGGGGCATTGATTGACCGCTACAATACGCCACACATGCTCCATCCAGCA
CGAGGAAATGCTGTTGTGTTGGCCTCACAACCAGCCGTGCTAGACGATGA
GACATCTCCTCCGCCCGTGTTGCCGCATGGCCATACCCACCTCGCTTTTG
GAACTACTGGATGCTGTTGGAGCACGCCTTCCCGCCCTTCTCGTCTACGC
ATTTCAACTGTTTGGGCACCTGACCCTCTCATGTCTACCCGTGCTCCGAA
AACCCCACACACCAGAGTTCGTGGTTTCGAAGGTGGACGATCTGGTGAAC
TGGGCGAGGAAGGGGTCGCTGTGGCCGATGACGTTCGGGCTGGCCTGCTG
CGCCGTGGAGATGATGCACTCCGCTGCCTCGCGCTACGACCTCGAGCGCT
TTGGGATGGTGAGTTCCGCCCCCCACCATGTATATGCCCACCTCTTCCCC
TCGTAAACAGATACCCCCCCTTATCCCTCGCCCTCCTCTGTCTCTCCCCG
CTCTTAAGCTTGCGGTGGTTTATTCTGTTTTTCCTTCTGACGGCGTGGTG
TTTTGATGAACGAGAATGCTTGCCGAGGGTGGGGCCGCAGGCAACGGCGC
CGCGCGCGATTGCCTCTTTTGGCGTTGCTGTCGTGGTCTTGAAAGCGCCA
TGTGTGTTTTTCAAGAGCGTTCAGTAATCGTTGACGCCGTTCGTGGTCTC
ACCGGAGTGTTTCATAAAAGCGTTCAGTAGTCGTTGACGCCGTTCATGTT
CTCACGGGAGCTTTTACCGTTAGTCGACGGATTTGTGCGTGTCTTCGGCG
GCGGTGTATCCGTTTTCTTGCGATCGTCCCTCGTGTCCCTCGTGCGGTTG
GGATCAGGTCGACCCGGCACTCCGCCGCGGCCTCCACGATTGCGTTGCCT
TTTTTTTTGTCCTTTTGTTCGGGCTACAAGCCCGCAGGCACTCCGGTATG
CACATCATTTGATGCCAAAATGACACTTTTCACAATTGTTGCTGGACTTT
TGTACAGCTTTGCGTATTGCTTTTTCCCGTATAACATTTCCACGTAGAAC
TAAATACAACATGTCATTTCTTAACCCGGTATGTTGCTGGTACGCTTCTT
GTGGTCGTGAGCAGGTGTTCCGGGCGTCGCCGCGGCAGTCGGACGTGATG
ATCGTGGCGGGCACGCTGTGCAACAAGATGGCACCAGCGCTGCGTAAGGT
AGGAGGGGTCGGAGTTACAGGACTTGAGAGAGAGAAATTGAAGGGGAAAG
AGGAGGTAGAAACAGAAACGGAGAAGGAGAGATTGCGCAAACGCACCGTC
ACAGCAGTGCGCCGATCTCACCCCCCCGCCACCGTTGGGCAAATTGGTTG
TAGGCACACGATCCCGCCCTTACTCATGTGTGGAGCATCGATATTGGGAA
TTCTGTTATCTTATCTGTGTGGAGAACCAATCTCACCGATGGTTGATCGA
ACAAACGTTTCACACAACAGCTGTTTTTTTGTTTTTTGTGCTAAACCTTG
CTGGGACTAGACGCTCTCGTCGGTCTCTCTGGTTTACCTGTTTCGCAGCC
AGTGAAACAAGCGATTCCAGAATCCTCTTCACCGATGAAATCAAAAGGAG
GCGTCCACCGTAGAGAAAATTGCTCTGTTTAGCTCCCGAGAAGTAGAGCA
GGCAAGACCGTGCTGTATGTATGTGTCGATGCCGCGGCCAACAACACAAG
TCATGACTTTTACCTCGTAGTAAATACAAACCAGGAAGACATCGCTGGCG
CGGCGGGACTCCTGCGCATGTGTCATCCGTAGAGATCCCACCGCTTACTA
CGTCACCACTTGTCTCCTGCCGTCTACCTTGGCATGGATAGGGCATTGGA
GTATCCCTCCACGTGGGGGATGCTGTGTTTTGAAGCATCACTCGCTCCTT
TTTTCTCACCGCCTCGTTCTGTGTCTCCCGGGCAGGTTTACGATCAGATG
CCCGAGCCGCGTTGGGTGGTGTCCATGGGGTCTTGCGCGAACGGGGGTGG
CTACTACCACTACTCGTACTCGGTAAGCGGTCGAGTGGTGTGCGCGAAGA
TGAAACGGGGTATAGCAGGGGCATGTTCAGACTCTTGTCGACCGGACGCG
TTTACCTCTCGAACACACGCTGATGTTGTTGTCATGTTGTACGGGGAAAG
TGCTAGTTTTGTATGCTCCCAACTTGGGACCAGTGCGACTTTCCGATGTT
GTACTTTTTTGTTTCACGCCTTCGGTTCGGCTCGATATCCAACGTCGGTG
TCTTACCCATGTGACACACGAGTAAACTAGCATGAGAAACCGGGTCGCTA
GATTTCCGGTAGACACAGCATTGTATCAATGGATACATCATCGTGTCAGC
GGATACATTCCTTTGCCCCAATCATGGATACATTCCTGGGCGTATACACA
TGACACCGACGAAAGTTGAGAAGGCCGGACAACGGATGCCATCTTCGGCG
AGCGGCGGAAGTCGGCGTCAACGCCTCGTAGTTTCCTGTGTGTGCCGTCG
ATTTTGCTTGTTCTCGCTCTGCCTTCGATTTCAAAGTCGGCCGTGATTCG
TGGTGCGTAGATATTGACATATTTCAAGTGGTGGAGTTCCTCACGTGCAT
GGACGAAGCTTGCCGACTCATCATTGGGAACAAGCAGGCCAAACTGCTTC
TACCCCTCCGCCGTTAGCAAACGAGCCAAATACCCCCAAGGGATGGGTTA
TTCTCAGTGATCGCCGTTACCTGTGTACCGGTAATTACCGGTATCAAGGT
TGGGGGTGCGGTAACAAAAAAAAATCGAGGTAATTGAGTTGCCCCCTGAG
GGCTACATCCACGGGACCCCCTCTTGCGTGCCACAGCAGAGCGGTGTGAC
AGCAGACAGACAGCAGACAGTAGACAGCAGGCAGCAGACAGTAGACAGCA
GACAGCAGACAGACCCTAGCCCAACGAAGCACACACGTAGCACTTGATTG
CAGGCCATGAGCAATCATCGAGGGTCCTCCTCTTGGGGGAGTGTGGGCCC
TGCACTTAGTTTAGAAGACGAGAACGCTGAAGGCCGCGCCGGGTTTCTTG
CGTTTGTCGATGTCACGAAGGCACATTCCGCCCACTCCATCATGCTATTA
ATAGTCACGTGCAAGACGTGCAGCAAAGAGATGCCGGGCACCAAACAATG
TATCATATCGGAACAGCAGCACACCAAACAAAAACAAGCACATTTTTCAT
TTTTTCCAGACGATATGATGACATGAGCACTGCGGGACCCCGGGGGGTAC
TCCGAATTAGAGAAGTAACCAGAAACGGGTATACTCGGGTGGATTATGAC
CATTTCAGGGTACACTTGGAAATCAACACGACACCACTCTCCGACAGCAT
CCGCCGTAGATCGCGGCGAAACAATCAACCGCTGTCTGTGTCCTGTGTCC
TGTGTCCTGTGCCTCGAAAGCATGATGCACGAGGCAGGTCATGCCCGTTT
TTCCCTCTCTCTGTGCCTCTCTCTCTCTCTCTCTCTCTGTTCTTTTACTG
ATCAGTACCACACCGAAGTACTCGCGCGTCAAGCGAGTCCGACCCTCTGT
TGAGAAGGGCCGGTATCCTATGGCCGCCCATGAACGATGACCGAGAGAGC
TTTGTTGTTCGTTTGGTTGTGGATACGTATGTGCGGTACACGGTATGTGC
GGCACACGGTTTTTTCTGCGGGTTTTATGCTAGAGCGTGGGGCGCCGGGA
TGATATGACCATTTCTGGGTACAAAATCGACCTCTTCCGGGTACATCAGT
AACCAATATCGGTCACACCAGAGGGTCCTAACTCCAGCGGAAGTTGTACC
CGATGGAGTTTTCTTCAGAAATGGGTACAATGGTTTTTCGGCCAATCAGC
TGACAGTCTGGGGGTGCAAGCGTGTTGATTTCTTGCTGTACCCTGAAGTG
GTGACTAAGTACCCGGGTGTACCCGTTTCTGGTTATTGGTCTCCGAATTA
TTCTCTGCGGAGCCCCCGGGAATGTTCTGTAACGTCCCCTGTTTTTTGCG
GTAACTGCGGTGCGGTAACACAATTTTGAGCTTTGCGGCAATTACCGGTA
ACGCATCAGACATTTCTGAGGTAACGGCGATCACTGGTTATTCTTGTGCA
TGTGTCTTCTCGTTACCATCGGCCCCCTACAACCATGTCGACTCATTTCG
GCGGGGCCAAGACGAAAACGCCTCCTGACCCCGTGTATATTTACGTTTGC
ATGTGTTCATGCCTCTTGCACCCATTTTTTTTATGATTGCCAGGTCGTAC
GTGGCTGCGACCGCATCGTGCCGGTGGACATCTACGTGCCGGGTTGCCCG
CCGACCGCGGAGGCTCTTCTGTACGGCCTTCTCCAGCTGCAGAAGAAGAT
CAAGGGGAACAAGTCGTTGTTGCTCCGGTTGAAGAAGTAGCGCATTTTTT
TTGTCTCTCCGCTGGTGTTGTGAGGAGGCACGCGGCGACTTTATTTTTTG
TTGTCGTTCACCGGTTTCACCATGTGTCGTCGTTTCCGTTTATGTAATGC
CGCCGGGGGGGTACACACAAACGGCTTTGTTTCGGGCTGGGTGTCCGCTC
AACGGTGTGCGAATAGGCCCAGATCTTTAGAAGCCCCCAGTCAGTGCTAA
CTAATGATCTGGTGGTTTTGGAACATGCTGGTATGCACACGATCGAAGAA
ACACTACCCATTCGAGATAGACCACAGTAGTCGAAGGGGATGTTTTGAGG
TCTCTCCACGAGTGGGACGAAAACCGGCGGGATAACAGGGGCACATTCAG
GGTCTATTTTAGCCTTTTCAATGAATTTCGCCCAGTGATGCCAGCAGGTG
CTGATCACAAAAACACTATGTAGTGTTCTATCGATTGGGGTCGACGATAC
AAATATCGGAGAGAAAGCCTCCGCGAGGTCGTGTGTTGAAACATTCTGCC
TTCACGGGAACAAGTTTGATCGTGGCTGAAATCCTGTAGACTTGCCTGCG
CAAACGATGCTGCTGGAAAGCACGGGTCTAAGGGAACGAGCTGTGCCGCA
CCCGCTTTCAAAATGTCCCAGCATTTCGGTCAAACACATGAACTTGGGTT
TCTTGACAAAAAGGAGTGGCAGAGTAGGAGCGCCACGGGAGGAGTTATAT
TCGTACCTGTGAATGCCATTGGTTCGGCGAAAAGCTTAAGTTTTGAGCAC
GGCTTTCACTGAGCTTGGGGTATGATGTATATTTCGCGGCAGACGCAAAC
CTACACTTCGCGTCATGGCCTGAGCCTTGGGCAAAATAAATATAACAAGG
GTCACCAATTTATTCCTTCATCACAATATACAACATACCGCCGTGCACAT
GGGTTGTAGAGGACACTAGGATACGTCAAACTTCGGAGTTTTTTTAAAAA
CAGGTTTTGTGAAGAGAGGGAATCGTCGTCGACCAGACGTTGGATGGGGA
GATGGCACCTAATGGACGTGGAGTATCCACACTTTTCGAGATACAAAGAG
GAGTATAGTACTCTGTGACCAGGTACAACCTACACTGCTGTGTCTTTTTT
CGAGACACAGTGATATGTGTGACTCCGTGTGTCTAGTGTCGTTCTTTCTC
TTACGGCAGAGTAGCATTGTGCCGCCCCACTGTTAAGCCTCTTCTTCTTC
ATCATGCCCCCGGCGGTAACAAACATGCGTTGCACATTGAGGAGAAGAAA
AGAGAGAGAGGGGAAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1028:5496..12711-

>mRNA_Ecto-sp13_S_contig1028.288.1 ID=mRNA_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1028:5496..12711- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAAACCCGCTCCACCGCCGCCGTCTACCGCGCTCCCGTGGCCCT
CCTCCACACCACGGACAAGAAGCAGGAGCAGTCCAGCAAGGTACAGGACA
TGCGCAAGCCGACCAGCTCTGAGCTGACGAGAGCAGAGAATGTGGACCAG
CTCATGCAGCAGGGAAAGGGCGGAGTTGAGTTCGTGGTTTCGAAGGTGGA
CGATCTGGTGAACTGGGCGAGGAAGGGGTCGCTGTGGCCGATGACGTTCG
GGCTGGCCTGCTGCGCCGTGGAGATGATGCACTCCGCTGCCTCGCGCTAC
GACCTCGAGCGCTTTGGGATGGTGTTCCGGGCGTCGCCGCGGCAGTCGGA
CGTGATGATCGTGGCGGGCACGCTGTGCAACAAGATGGCACCAGCGCTGC
GTAAGGTTTACGATCAGATGCCCGAGCCGCGTTGGGTGGTGTCCATGGGG
TCTTGCGCGAACGGGGGTGGCTACTACCACTACTCGTACTCGGTCGTACG
TGGCTGCGACCGCATCGTGCCGGTGGACATCTACGTGCCGGGTTGCCCGC
CGACCGCGGAGGCTCTTCTGTACGGCCTTCTCCAGCTGCAGAAGAAGATC
AAGGGGAACAAGTCGTTGTTGCTCCGGTTGAAGAAGTAG