Homology
BLAST of mRNA_Ecto-sp13_S_contig1027.284.1 vs. uniprot
Match: A0A6H5KWT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT0_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.110e-54 Identity = 126/193 (65.28%), Postives = 130/193 (67.36%), Query Frame = 1 Query: 1066 KDAISDVPA--------EVVHRSSPVRRFSGECKTAVGVHEGGAVEGAPGVVITLEKEAAITNAQDGHDAVVGTAGSGNGQDGPGGLKEELEEQQHRVPQLSSLTPSTKMEKATKKSWWGGPRIPNGKVRPPCKSPPQXXXXXXXXXXXXXXXXXXXXXXXLPAEAPLATTNRAAPERRSWLSFKWNRRNVSA 1620
KDAI DVPA EV R S VRRFSGECKTAV VHEGGAVEGAPGV ITLEKEAAITNAQDGH VV AG+G+GQDG GGLKE+LEEQQHR P+LSSLTPST KSPPQ XXXXXXXXX LPA A ATTNRAAPERRSWLSFKWNRRNVSA
Sbjct: 13 KDAIGDVPAVAQKGGGAEVGRRPSLVRRFSGECKTAVVVHEGGAVEGAPGVTITLEKEAAITNAQDGHGVVVEKAGTGDGQDGRGGLKEKLEEQQHRAPELSSLTPST-------------------------KSPPQERVPEQAEXXXXXXXXXPVHESELPAAASPATTNRAAPERRSWLSFKWNRRNVSA 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1623 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1611 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462519.8561146-CDS-Ecto-sp13_S_contig1027:11104..11359 | 1681462519.8561146-CDS-Ecto-sp13_S_contig1027:11104..11359 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1027 11105..11359 - |
| 1681462519.875366-CDS-Ecto-sp13_S_contig1027:11931..12231 | 1681462519.875366-CDS-Ecto-sp13_S_contig1027:11931..12231 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1027 11932..12231 - |
| 1681462519.8872948-CDS-Ecto-sp13_S_contig1027:12814..13870 | 1681462519.8872948-CDS-Ecto-sp13_S_contig1027:12814..13870 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1027 12815..13870 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462519.89777-UTR-Ecto-sp13_S_contig1027:13870..13882 | 1681462519.89777-UTR-Ecto-sp13_S_contig1027:13870..13882 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1027 13871..13882 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1027.284.1 >prot_Ecto-sp13_S_contig1027.284.1 ID=prot_Ecto-sp13_S_contig1027.284.1|Name=mRNA_Ecto-sp13_S_contig1027.284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=537bp
MESFAETKALGEEMADNLWGTGQRDFRAGTGGTEASDGSDFTPAQLAAMR
TRVSVQGMPLPDGVKDVDWQPPASTGLEHSSAIFNTISDQEGVLRCSSAG
LNVNNCHFRSWQEDNGVAKTFASDAVEKGVAGVTRSVTIAGGFPQLAGRP
QTMPPADLRSSRARAASEAIRPVVRPGTRFVSPSMGMPFRRAKTGPVHAT
EGSGQGRLQFTEEDESGSDESESPVPPGPSKDAVKGAEEGKELSENGRDS
AVGESGAEPSDGSSKQTSLMTRRPLCTSSNVAGDAPERTDDTKDSPQRED
GATDRVTTGPSLPSCTYGPKLPCSQTPRRPSSGPPSSHARQQPQNRRSLH
HKDAISDVPAEVVHRSSPVRRFSGECKTAVGVHEGGAVEGAPGVVITLEK
EAAITNAQDGHDAVVGTAGSGNGQDGPGGLKEELEEQQHRVPQLSSLTPS
TKMEKATKKSWWGGPRIPNGKVRPPCKSPPQEPVPEQAQEQPREQPEESV
HESELPAEAPLATTNRAAPERRSWLSFKWNRRNVSA* back to topmRNA from alignment at Ecto-sp13_S_contig1027:11105..13882- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1027.284.1 ID=mRNA_Ecto-sp13_S_contig1027.284.1|Name=mRNA_Ecto-sp13_S_contig1027.284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1027:11105..13882- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGTGAGAACATGGAGAGTTTTGCCGAAACTAAGGCGCTCGGTGAAGA
AATGGCAGACAACCTCTGGGGCACCGGCCAACGGGATTTTAGAGCCGGTA
CGGGCGGGACCGAAGCATCGGATGGATCAGATTTCACTCCCGCGCAGCTG
GCGGCGATGAGGACGAGAGTTTCCGTTCAAGGCATGCCTCTCCCAGATGG
AGTCAAGGACGTGGATTGGCAACCGCCAGCGTCGACGGGACTCGAACATT
CCAGCGCCATATTCAACACAATATCGGACCAGGAAGGGGTGCTACGGTGC
TCCAGCGCAGGATTGAACGTGAACAATTGCCATTTTCGGAGTTGGCAAGA
GGACAACGGTGTCGCCAAGACGTTCGCCTCTGACGCGGTTGAGAAAGGTG
TCGCCGGCGTGACACGGAGCGTGACCATCGCTGGTGGGTTTCCTCAGCTA
GCAGGGCGCCCACAGACGATGCCGCCCGCTGATTTGCGTTCTTCCCGTGC
AAGAGCGGCATCAGAAGCCATCAGGCCGGTTGTCCGTCCCGGTACGAGGT
TTGTTTCGCCGTCTATGGGAATGCCCTTCAGGAGGGCGAAAACTGGACCG
GTACATGCGACGGAAGGAAGCGGTCAAGGCAGGTTGCAGTTCACCGAGGA
GGACGAAAGCGGGTCCGACGAAAGCGAATCACCTGTGCCACCAGGTCCTT
CGAAAGACGCGGTCAAGGGCGCAGAGGAGGGGAAGGAATTGAGTGAAAAC
GGGAGGGATTCTGCGGTCGGGGAGAGTGGCGCTGAGCCTTCCGACGGGTC
CAGCAAGCAAACCTCCTTGATGACGCGACGCCCTTTGTGTACTTCATCGA
ATGTTGCAGGTGACGCACCAGAGAGAACGGACGATACGAAAGATTCACCG
CAACGAGAGGATGGTGCGACAGACAGGGTCACTACTGGGCCGTCGCTGCC
TTCTTGTACGTATGGGCCGAAACTACCCTGTTCGCAAACACCACGGCGCC
CTTCAAGCGGTCCCCCCAGCTCTCACGCACGGCAGCAACCACAGAATAGG
CGGTCACTTCACCACAAGGTGCCACACAACCCAAGTCTCTGTTGCTGTTG
TTGTCTTCATATTGAAAACCGTTCCGATCTCTCTGCCCGATGTCTCCATC
TGCCCGTACTGATCTACCATTTGACGCGGTCGATTCCCGCGGTCACAGGC
CAGCTTACCCTAAAATGGGTATACCCAAATGAAATGAGAGTCAGCAACAC
CACATGCAAGTTGCATATCCCTAATTTGTGTGGTTGACATCAAAAAGTGG
GTGGTTACTTCACCGAGAGGCGTCATACTCCCACCTACACGTGAGCATTT
GGTTGGGTTTCACGGAGCTCATTCCACAACAGAGCTTTATTTTTCTTCAG
CACGAGGTGCGAACCGATACTTCTTCGTAAACGTGGTTCGGCGCCACAGC
TTGGCCTCGGCTGCTGCTAAAATAGCATGAACATCATGGCTCGGGACTGG
GTGAACGGAACCACCTGCGATCTGTGATAAACGATCGCCGCGATGTTGTA
CTGGTTTGTAAGACTCGCTGCTCGTAGAGTCACCTGCCTCAGTGATTTCC
TGCACACTTATTTACGAACGCTGCTGGTGTGAAAATCCGCAACGTAACCA
GGATGCTATCAGCGATGTGCCGGCCGAGGTAGTACACCGGTCTTCTCCTG
TGCGCCGGTTCAGCGGGGAATGCAAAACGGCAGTGGGTGTTCACGAGGGT
GGTGCTGTCGAGGGCGCCCCGGGTGTTGTAATCACGCTAGAGAAGGAAGC
TGCCATCACCAACGCTCAGGATGGACACGACGCTGTGGTTGGGACAGCGG
GGTCGGGTAATGGCCAAGACGGGCCAGGAGGCCTAAAGGAGGAATTGGAA
GAACAACAACACAGGGTCCCCCAACTGTCGAGCTTGACTCCGAGTACAAA
GGTGGGGGGGGTAATGACGAATTGCAACATGTTGACATGCCTGTTGAGCG
AATTGGAGGAGAACCCCAGGGGGTCGCACATGCCGATGTCTTGATACCAC
AACCTTCAGTTGAATGGAGCCCGTATGGGAACTTCCTCACGTTCGTTCAG
TACACTTGTATCCCTGGAATTTTTCGTTGATACTTAGGTTTTGGAAGGGC
CCAAACACGCACGGTGGACAGACGCGACAGGCCGAAACAAACTTGTCGGC
GTCGCAATAAAGCTGGAGGTCGATTATACATGTCCTGTATATGACTAGCA
CAAGAACTTTCCTCATGGTGGAAAAAGCTGTTGATGCCAAGGGGCGCATA
GTTCTACATTACTTCGTATCAGTGACGCAACGCTACCCTGCATACACAAG
GATTACATGAGCAACAGGCGTGCGCTTCGTCCACCAAAAACTGTGTCACC
GCTGCGTAGTTGCCTGATTGAGAACTGGCTCGCTGAATTGACTCGCTTCG
CAAGAATATTGCATTATTTCGACGTCTCTGCCCCTGTGCGTCGATGCATG
TACCGATAACGTGCCCCACACAGATGGAGAAAGCAACAAAGAAATCATGG
TGGGGTGGACCACGAATTCCCAATGGAAAGGTTCGACCCCCTTGTAAGTC
ACCGCCACAGGAACCGGTTCCAGAACAAGCCCAAGAGCAGCCCCGAGAAC
AGCCCGAAGAATCGGTCCATGAGAGCGAGCTCCCGGCGGAAGCCCCTCTC
GCCACTACAAACCGCGCAGCTCCCGAACGCAGGTCGTGGCTCAGCTTTAA
GTGGAATCGGAGGAATGTTTCGGCGTAA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1027:11105..13882- >mRNA_Ecto-sp13_S_contig1027.284.1 ID=mRNA_Ecto-sp13_S_contig1027.284.1|Name=mRNA_Ecto-sp13_S_contig1027.284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1027:11105..13882- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGTTTTGCCGAAACTAAGGCGCTCGGTGAAGAAATGGCAGACAA
CCTCTGGGGCACCGGCCAACGGGATTTTAGAGCCGGTACGGGCGGGACCG
AAGCATCGGATGGATCAGATTTCACTCCCGCGCAGCTGGCGGCGATGAGG
ACGAGAGTTTCCGTTCAAGGCATGCCTCTCCCAGATGGAGTCAAGGACGT
GGATTGGCAACCGCCAGCGTCGACGGGACTCGAACATTCCAGCGCCATAT
TCAACACAATATCGGACCAGGAAGGGGTGCTACGGTGCTCCAGCGCAGGA
TTGAACGTGAACAATTGCCATTTTCGGAGTTGGCAAGAGGACAACGGTGT
CGCCAAGACGTTCGCCTCTGACGCGGTTGAGAAAGGTGTCGCCGGCGTGA
CACGGAGCGTGACCATCGCTGGTGGGTTTCCTCAGCTAGCAGGGCGCCCA
CAGACGATGCCGCCCGCTGATTTGCGTTCTTCCCGTGCAAGAGCGGCATC
AGAAGCCATCAGGCCGGTTGTCCGTCCCGGTACGAGGTTTGTTTCGCCGT
CTATGGGAATGCCCTTCAGGAGGGCGAAAACTGGACCGGTACATGCGACG
GAAGGAAGCGGTCAAGGCAGGTTGCAGTTCACCGAGGAGGACGAAAGCGG
GTCCGACGAAAGCGAATCACCTGTGCCACCAGGTCCTTCGAAAGACGCGG
TCAAGGGCGCAGAGGAGGGGAAGGAATTGAGTGAAAACGGGAGGGATTCT
GCGGTCGGGGAGAGTGGCGCTGAGCCTTCCGACGGGTCCAGCAAGCAAAC
CTCCTTGATGACGCGACGCCCTTTGTGTACTTCATCGAATGTTGCAGGTG
ACGCACCAGAGAGAACGGACGATACGAAAGATTCACCGCAACGAGAGGAT
GGTGCGACAGACAGGGTCACTACTGGGCCGTCGCTGCCTTCTTGTACGTA
TGGGCCGAAACTACCCTGTTCGCAAACACCACGGCGCCCTTCAAGCGGTC
CCCCCAGCTCTCACGCACGGCAGCAACCACAGAATAGGCGGTCACTTCAC
CACAAGGATGCTATCAGCGATGTGCCGGCCGAGGTAGTACACCGGTCTTC
TCCTGTGCGCCGGTTCAGCGGGGAATGCAAAACGGCAGTGGGTGTTCACG
AGGGTGGTGCTGTCGAGGGCGCCCCGGGTGTTGTAATCACGCTAGAGAAG
GAAGCTGCCATCACCAACGCTCAGGATGGACACGACGCTGTGGTTGGGAC
AGCGGGGTCGGGTAATGGCCAAGACGGGCCAGGAGGCCTAAAGGAGGAAT
TGGAAGAACAACAACACAGGGTCCCCCAACTGTCGAGCTTGACTCCGAGT
ACAAAGATGGAGAAAGCAACAAAGAAATCATGGTGGGGTGGACCACGAAT
TCCCAATGGAAAGGTTCGACCCCCTTGTAAGTCACCGCCACAGGAACCGG
TTCCAGAACAAGCCCAAGAGCAGCCCCGAGAACAGCCCGAAGAATCGGTC
CATGAGAGCGAGCTCCCGGCGGAAGCCCCTCTCGCCACTACAAACCGCGC
AGCTCCCGAACGCAGGTCGTGGCTCAGCTTTAAGTGGAATCGGAGGAATG
TTTCGGCGTAA back to top
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