mRNA_Ecto-sp13_S_contig10262.281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10262.281.1
Unique NamemRNA_Ecto-sp13_S_contig10262.281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.100e-22
Identity = 51/72 (70.83%), Postives = 52/72 (72.22%), Query Frame = -2 
Query:    3 TRKSRAWIKLSAGGFGSANARAFQE--------------R*AMIPMTIPSSDFHKPEIMRFLAPYYVEKDSL 176
            TRKSRAWIKLSAGGFGSANARA QE              R     +TIPSSDFHKPEIMRFLAPYYVEKDSL
Sbjct:  152 TRKSRAWIKLSAGGFGSANARAIQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYVEKDSL 223
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.720e-22
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = -2 
Query:    3 TRKSRAWIKLSAGGFGSANARAFQE--------------R*AMIPMTIPSSDFHKPEIMRFLAPYYVEKDSL 176
            TRKSRAWIKLSAGGFGSA+ARAFQE              R     +TIPSSDFHKPEIMRFLAPYYVEKDSL
Sbjct:  148 TRKSRAWIKLSAGGFGSADARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYVEKDSL 219
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.180e-21
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = -2 
Query:    3 TRKSRAWIKLSAGGFGSANARAFQE--------------R*AMIPMTIPSSDFHKPEIMRFLAPYYVEKDSL 176
            TRKSRAWIKLSAGGFGSANARAFQE              R     +TIPSSDFHKPEIMRFLAPY+VEKDSL
Sbjct:  405 TRKSRAWIKLSAGGFGSANARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYFVEKDSL 476
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: D7FUZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.690e-19
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = -2 
Query:    3 TRKSRAWIKLSAGGFGSANARAFQER*AMIPMTIPSSDFHKPEIMRFLAPYYVEKDSL 176
            TRKSRAWIKLSAGGFGSANA AFQE          SSDFHKPEIMRFLAPYYVEKDSL
Sbjct:  438 TRKSRAWIKLSAGGFGSANAWAFQE----------SSDFHKPEIMRFLAPYYVEKDSL 485
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.870e-18
Identity = 47/71 (66.20%), Postives = 50/71 (70.42%), Query Frame = -2 
Query:    3 RKSRAWIKLSAGGFGSANARAFQE--------------R*AMIPMTIPSSDFHKPEIMRFLAPYYVEKDSL 173
            RKS+AWIKLSAGG GSANARAFQE              R     +TIPSSDFHKPEIMRFLA YYVEK+SL
Sbjct:  256 RKSKAWIKLSAGGIGSANARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLARYYVEKNSL 326
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5KKM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.770e-18
Identity = 52/111 (46.85%), Postives = 54/111 (48.65%), Query Frame = -2 
Query:    3 TRKSRAWIKLSAGGFGSANARAFQER*AMIP-----------------------------------------------------MTIPSSDFHKPEIMRFLAPYYVEKDSL 176
            TRKSRAWIKLSAGGFGSANARAFQER  +                                                       +TIPSSDFHKPEIMRFLAPYYVEKDSL
Sbjct:   39 TRKSRAWIKLSAGGFGSANARAFQERLQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYVEKDSL 149
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: D7G6N1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G6N1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.600e-10
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:    3 MTIPSSDFHKPEIMRFLAPYYVEKDSL 83
            +TIPSSDFHKPEIMRFLAPYYVEKDSL
Sbjct:   12 LTIPSSDFHKPEIMRFLAPYYVEKDSL 38
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: D8LH35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH35_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.600e-8
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:    3 MTIPSSDFHKPEIMRFLAPYYVEKDSL 83
            +TIPSSDFHKPEIMRFLAPYYVEKDSL
Sbjct:  229 LTIPSSDFHKPEIMRFLAPYYVEKDSL 255
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BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Match: A0A6H5JSE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.010e-7
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = -2 
Query:    3 MIPMT-IPS------SDFHKPEIMRFLAPYYVEKDSL 92
            MIPMT IP       SDFHKPEIMRF APYYVEKDSL
Sbjct:    1 MIPMTCIPGVTVVLGSDFHKPEIMRFFAPYYVEKDSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10262.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KHD1_9PHAE5.100e-2270.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF40_9PHAE6.720e-2270.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R4_9PHAE3.180e-2170.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ7_ECTSI2.690e-1981.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR20_9PHAE3.870e-1866.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKM5_9PHAE8.770e-1846.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6N1_ECTSI5.600e-1096.30Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D8LH35_ECTSI1.600e-896.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSE8_9PHAE3.010e-775.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10262contigEcto-sp13_S_contig10262:3947..4453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size179
Hectar predicted targeting categorysignal peptide
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.6143417-UTR-Ecto-sp13_S_contig10262:3946..39881681462519.6143417-UTR-Ecto-sp13_S_contig10262:3946..3988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10262 3947..3988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.623698-CDS-Ecto-sp13_S_contig10262:3988..40241681462519.623698-CDS-Ecto-sp13_S_contig10262:3988..4024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10262 3989..4024 +
1681462519.6328523-CDS-Ecto-sp13_S_contig10262:4354..44531681462519.6328523-CDS-Ecto-sp13_S_contig10262:4354..4453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10262 4355..4453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10262.281.1prot_Ecto-sp13_S_contig10262.281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10262 3989..4453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10262.281.1

>prot_Ecto-sp13_S_contig10262.281.1 ID=prot_Ecto-sp13_S_contig10262.281.1|Name=mRNA_Ecto-sp13_S_contig10262.281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MISGLWKSELGMVIGIIAYLSWKARALAEPKPPADSLIQALDFRV
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mRNA from alignment at Ecto-sp13_S_contig10262:3947..4453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10262.281.1 ID=mRNA_Ecto-sp13_S_contig10262.281.1|Name=mRNA_Ecto-sp13_S_contig10262.281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10262:3947..4453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGGCTGTCCTTCTCGACGTAGTAGGGGGCGAGGAAGCGCATGATCTC
CGGCTTGTGGAAGTCGGAGCTGGGGATGGTAAGGATCGCCGCCGTGCAGC
GTCGCGGTCCAGTCATGAACTGGAACAAGTTGTACCATAGGCTGGGCCGG
GCCGTCGTGGGAAGGAGGGGGGGTGCGCACCGATTCGGATCAGTTGTTTG
TCGCTCCACATGTGTGCTACACATGGTCATCAACAGCCATCATGAAGAGT
AAAAGTTTCTTCTCATATGAAGACCGCCATCCAAAACACGTATGGTACGG
ATAGAAAATATTATTGTCGCAACCATGACGGAGGTTAACTCTAATCTATC
TTTCCTGTGGGAGACGCTAACGTACCCTAATACTGCTACTGTAACTCCGG
GAATGCAGGTCATTGGGATCATCGCTTACCTCTCTTGGAAGGCCCGGGCG
TTGGCGGAACCAAAGCCGCCGGCAGATAGCTTGATCCAGGCTCTCGACTT
CCGAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10262:3947..4453+

>mRNA_Ecto-sp13_S_contig10262.281.1 ID=mRNA_Ecto-sp13_S_contig10262.281.1|Name=mRNA_Ecto-sp13_S_contig10262.281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10262:3947..4453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCCGGCTTGTGGAAGTCGGAGCTGGGGATGGTCATTGGGATCAT
CGCTTACCTCTCTTGGAAGGCCCGGGCGTTGGCGGAACCAAAGCCGCCGG
CAGATAGCTTGATCCAGGCTCTCGACTTCCGAGTG
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