mRNA_Ecto-sp13_S_contig10257.278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: D7G2X6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2X6_ECTSI) HSP 1 Score: 257 bits (657), Expect = 2.220e-86 Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 1 Query: 1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQLWRLVP 429 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLE DT+QQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQD+STAVPVCNALSLVFTAATAMA+GEKV+ PLRTVSGIVL LMGLAVCVASK QL LVP Sbjct: 1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLEPDTQQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDVSTAVPVCNALSLVFTAATAMALGEKVDRPLRTVSGIVLALMGLAVCVASKAQLLTLVP 143
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A7S2V8D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D6_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.410e-32 Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 1 MPLSTALSFVAVGACWGCTTPFIKDGTS----SKLESDTKQQPTTNENN----RLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 M + TA+ F+ VGA WGCTTPF++ GT +K + T+ +P NE + KLF PL L +AA+ + LNQ GS L+YYLLSSQD+S AVP+CN+L+LVFTA T +G V ++ GI LV+ G+ +CV S Sbjct: 1 MEMQTAVFFILVGAMWGCTTPFMRTGTEETEKNKDDPATETRPVQNERKVAAGGIAKLFEPLLRLLRPQAALAYGLNQGGSLLYYYLLSSQDISLAVPICNSLTLVFTALTEWVLGTAVRDTWKSALGISLVIFGVTICVLSN 143
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A448Z7G1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7G1_9STRA) HSP 1 Score: 114 bits (286), Expect = 6.350e-30 Identity = 56/134 (41.79%), Postives = 90/134 (67.16%), Query Frame = 1 Query: 19 LSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-----LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 LS + VGA WGCT P ++ G+S ES + ++P +++ L LRS A+V +P++LNQSGS +FY LL++ D+S AVP+CNA++L+F+ T+ +GE + PLRT +G L+++G+A+CV+S+ Sbjct: 9 LSMLLVGALWGCTNPLLRKGSSDAEESSSAKRPDASDDGSXXDSSSSFLVSSLRSFANVGVWLPYVLNQSGSIVFYVLLANSDISMAVPICNAMALLFSFLTSSLLGEPIQKPLRTGAGAFLIMVGVAICVSSQ 142
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A225WLS3_9STRA (Putative membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLS3_9STRA) HSP 1 Score: 111 bits (278), Expect = 7.960e-29 Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 7 LSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQ 411 +ST LSF+ VGA WGCT P IK G++ + K +N GK L G +++ V +PF LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+ +GEK P+ T +G+ L+L+G+A+C SK Q Sbjct: 5 ISTLLSFLFVGALWGCTNPLIKRGSNDSVMYTRK----SNSVGEFGKQLIGLVKNWQFV---LPFALNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPVSTYTGMFLILLGVAICFDSKQQ 133
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A8K1C6X8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6X8_PYTOL) HSP 1 Score: 109 bits (273), Expect = 4.290e-28 Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 10 STALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 ST LSF+ VGA WGCT P IK G+ + T++ + E R G + + + + +PFLLNQSGS + YLL S D+S AVP+CN+L+ VFTA T+ +GEK PL T +G+VL+L+G+ +C SK Sbjct: 7 STLLSFLFVGALWGCTNPLIKTGSGDDVMY-TRRDNSAAEFARQG-----VHLVKNWRFVVPFLLNQSGSVAYVYLLGSTDISNAVPICNSLTFVFTAMTSRLLGEKPRRPLSTYTGMVLILLGVLLCYQSK 132
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A3R7KFJ3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFJ3_9STRA) HSP 1 Score: 109 bits (272), Expect = 6.810e-28 Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 10 STALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 ST LSF+ VGA WGCT P IK G SD +N+ + + + + + +PF+LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+ +GEK P+ T +G+VL+L+G+A+C SK Sbjct: 6 STLLSFLFVGALWGCTNPLIKRG----KRSDDDAMYARKDNSVQEFVKQVVHLVKNWQFVLPFILNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPISTYTGMVLILLGVAICFNSK 133
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A7S4AM60_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM60_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.210e-27 Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = 1 Query: 19 LSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQ 411 LS + VGA WGCT P ++ G S+++ES + + + L L+S +VK +P++LNQSGS +FY LL++ D+S AVP+CNA +L+F+ T+ +GE + P RT +G L+++G+A+CV+S+ Q Sbjct: 39 LSMLVVGALWGCTNPLLRKG-SAEVESSSSSK-------KKNILASALKSFLNVKVWLPYVLNQSGSVVFYVLLANSDISMAVPICNATALLFSFVTSSLLGEPIQKPFRTAAGAFLIMVGVAICVSSQEQ 161
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: D0MUD0_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUD0_PHYIT) HSP 1 Score: 106 bits (265), Expect = 6.950e-27 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 13 TALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLA-SVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 T LSF+ VGA WGCT P IK G++ + T ++N +G+ + + + +PF LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+ +GEK P T +G+VL+L+G+A+C SK Sbjct: 7 TLLSFLFVGALWGCTNPLIKRGSNDDVMY-------TRKDNSIGEFTKQAVGIVKNWQFVLPFALNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSK 131
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A2D4C7R2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7R2_PYTIN) HSP 1 Score: 106 bits (265), Expect = 8.460e-27 Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1 Query: 1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 M +T LSF+ V A WGCT P IK GTS T +N + + L L + + + +PFLLNQSGS F +LL+S ++S+AVP+CN+L+ VFTA T+ +GE PL T +G+ L+L G+ VC +K Sbjct: 1 MATTTLLSFLLVSALWGCTNPLIKRGTSQSPAGSRADAVYTRRDNSVKEWLAQALHWIRNWQFVVPFLLNQSGSVAFVHLLASAEISSAVPICNSLTFVFTAITSRVLGEVPRRPLWTYTGVALILAGVFVCFQAK 136
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: F0W5K4_9STRA (Uncharacterized protein AlNc14C21G2169 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K4_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.430e-26 Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = 1 Query: 7 LSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405 ++T SF+ +GA WGCT P +K G+ S + T++ + E R F L + K +PFL+NQSGS ++ YLL S ++S AVP+CN+LS VFTA TA +GEK P T +G++LV +G+ +C SK Sbjct: 4 VNTLASFLVIGALWGCTNPLMKKGSVSNVY--TRENNSVRECVRFIVAF-----LTNWKFTVPFLVNQSGSMVYVYLLGSTELSNAVPICNSLSFVFTAITATLLGEKSKQPACTYAGMLLVCIGVLICYNSK 129 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10257.278.1 >prot_Ecto-sp13_S_contig10257.278.1 ID=prot_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLback to top mRNA from alignment at Ecto-sp13_S_contig10257:4742..5879- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10257.278.1 ID=mRNA_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:4742..5879- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10257:4742..5879- >mRNA_Ecto-sp13_S_contig10257.278.1 ID=mRNA_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:4742..5879- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |