mRNA_Ecto-sp13_S_contig10257.276.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 335 bits (859), Expect = 8.220e-102 Identity = 221/306 (72.22%), Postives = 228/306 (74.51%), Query Frame = 1 Query: 1 NRVTGDAAAGGIICAVFASTINWSGGLTRFIGSSSTFVGGALYVSGSEVTWSGGTEFSRNTALLGGAVYXXXXXXXXXXXXXXXXXXXXXXXXGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERGISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYD 918 NRVTGDAAAGGIICAVFASTI WSGGLTRFIG SS+FVGGALYVSGSEVTWSGGTE XXXXXXXXXXXXXXXXXXXXXX GA+MSPSYDS YNPLESSL INGTTTFFNNTCGENGG LALF ACSL AASVFGSGN+RG+ SPI+PTKF+RCRFIDNVAT SGGAVDSAAGQD V NSVFKGNSAEVGGALRLAG XXXXXXXXXVSG QEGAAVSNIG+VSTM NSSF GNGFTCGPD FLEYD Sbjct: 615 NRVTGDAAAGGIICAVFASTIYWSGGLTRFIGGSSSFVGGALYVSGSEVTWSGGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGAMMSPSYDSEYNPLESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGNDRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYD 920
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.160e-100 Identity = 253/308 (82.14%), Postives = 261/308 (84.74%), Query Frame = 1 Query: 1 NRVTGDAAAGGIICAVFASTINWSGGLTRFIGSSSTFVGGALYVSGSEVTWSGGTEFSRNTALLGGAVYXXXXXXXXXXXXXXXXXXXXXXXXGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERGISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYDTA 924 NRVTG +AAGGIICAV ASTI+WSGGLTRFIGSSS+ GGALYVSGSEVTWSGGTE XXXXXXXXXXXXXXXXXXXXX GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLAL GA SL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGN+RGI SP+VPTKFNRCRFIDNVATASGGAVDSAAGQD V NSVFKGNSAEVGGALR XXXXXXXXXVSGHQEGAAVSNIG+VSTM NSSF GNGFTCGPD FLE+DT+ Sbjct: 675 NRVTGVSAAGGIICAVLASTIHWSGGLTRFIGSSSSLAGGALYVSGSEVTWSGGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALLGAFSLDINTADVSFTENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNDRGILSPVVPTKFNRCRFIDNVATASGGAVDSAAGQDIVVNSVFKGNSAEVGGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTS 982
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.690e-38 Identity = 118/280 (42.14%), Postives = 148/280 (52.86%), Query Frame = 1 Query: 82 TRFIGSSSTFVGGALYVSGSEVTWSGGTEF-SRNTALLGGAVYXXXXXXXXXXXXXXXXXXXXXXXXGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERG-ISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEY 915 T F+ +S+ GGAL+++ S V+W GGTEF S XXXXXXXXXXXXXX V S + DS +P +S+L+I+G T F NNT GENGG LAL G S+ A S GSGN +G + ++PT F+RCRF N ATA+GGAVDSA+GQD ++VF+GN A GGALRLAG A +S EGAAVSN+G++S + N+SF GN F C PD FL Y Sbjct: 2147 TSFVNNSAGTNGGALWLTDSSVSWGGGTEFISXXXXXXXXXXXLLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 153 bits (386), Expect = 6.600e-38 Identity = 126/304 (41.45%), Postives = 162/304 (53.29%), Query Frame = 1 Query: 10 TGDAAAGGIICAVFASTINWSGGLTRFIGSSSTFVGGALYVSGSEVTWSGGTEF-SRNTALLGGAVYXXXXXXXXXXXXXXXXXXXXXXXXGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERG-ISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEY 915 +G +A GG I A A T+ ++ T F+ +S+ GGAL+++ S V+W GGTEF S X XXXXXXXXXXXXXX V S + DS +P +S+L+I+G T F NNT GENGG LAL G S+ A S GSGN +G + ++PT F+RCRF N ATA+GGAVDSA+GQD ++VF+GN A GGALRLAG A +S EGAAVSN+G++S + N++F GN F C PD FL Y Sbjct: 213 SGSSAIGGAIAASGA-TLAFNN--TSFVNNSAGSNGGALWLTDSSVSWGGGTEFISXXXXXXXXXXXXLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNY 513
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 152 bits (385), Expect = 9.550e-38 Identity = 92/216 (42.59%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 280 GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA-SVFGSGNERGISS--PIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYD 918 GA++SP DS YNP ES+L NGTTTFFNN CG NGGG+AL+G C+L A + FGSG +G+ P PT F+RCRF+ N ATA+GGA+D+AAG D ++ F+ N+A GGALRLAGTA S GAAVSNIGIVS+ +F GNGF C FL Y+ Sbjct: 699 GAIVSPQLDSEYNPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYN 914
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.740e-33 Identity = 87/218 (39.91%), Postives = 109/218 (50.00%), Query Frame = 1 Query: 280 GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA-SVFGSGNERGISS--PIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYDTA 924 GA++SP +D N S++ INGTT+FFNN CG NGG + L GAC L A +VFGSGN +G++ P PT F RC F+ N ATA+GGA+DSAAG D ++ F+ N+A GGALRLAGTA S + GAAVSNIG V + N SF NGF C FL Y+ + Sbjct: 890 GAIVSPEFDDELNLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNAS 1107
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 137 bits (344), Expect = 2.590e-32 Identity = 89/217 (41.01%), Postives = 107/217 (49.31%), Query Frame = 1 Query: 280 GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGN--ERGISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYDTA 924 G + S S DS N S+L +NGTT F NNTCG NGG LAL G ++ A S GSGN E SP PT F+ C FIDN ATA+GGA+DSAAGQD NS F+GN A GG LRLAGTA +S Q GAAVSNIG + ++ N +F GN F C P +L+Y+ + Sbjct: 538 GVIGSFSTDSVSNQ-GSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNAS 753
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.440e-31 Identity = 85/212 (40.09%), Postives = 107/212 (50.47%), Query Frame = 1 Query: 280 GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERGISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEY 915 GAV S + DS +P +S+L+I+G T F NNT GENGG LAL G S+ + V N + ++PT F+RCRF N TA+GGAVDSA+GQD ++VF+GN A GGALRLAG A +S EGAAVSN+GI+S + N+SF GN F C PD FL Y Sbjct: 311 GAVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTF---------------SDVIFDSNFAHVGGALLPTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNY 507
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.140e-29 Identity = 129/288 (44.79%), Postives = 153/288 (53.12%), Query Frame = 1 Query: 73 GGLTRFIGSSSTFVGGALYVSGSEVTWSGGTEFSRNTALLG-GAVYXXXXXXXXXXXXXXXXXXXXXXXXGAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERG---ISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQFLEYDTA 924 GG T F+G+ + VGG L S + W GAV+ XXXXXXXXXXXXXXXXX V SP DS YN S+L ING T F NNTCG +GGGLA F S+ XXXXXXXXXXXXXXA S+ GSGN +G + P PT F+RC F+ N A+A+GGA +SAAGQD +VF GN A GGALR+AGTA VS EGAA+SNIG +S M + F N F C FL+ + + Sbjct: 437 GGSTAFVGNFAEKVGGGLVASYATAAWGXXXXXXXXXXXXXXGAVFVVNGSSVXXXXXXXXXXXXXXXXXXXVASPILDSVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPS-PTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNAS 723
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.810e-27 Identity = 94/209 (44.98%), Postives = 119/209 (56.94%), Query Frame = 1 Query: 280 GAVMSPSYDSTYNPLESSLAINGTTTFFNNTCGENGGGLALFGACSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVFGSGNERGISSPIVPTKFNRCRFIDNVATASGGAVDSAAGQDNVTNSVFKGNSAEVGGALRLAGTAFXXXXXXXXXVSGHQEGAAVSNIGIVSTMVNSSFIGNGFTCGPDQF 906 G ++ + ST N + L INGTT F +N+ G NGGG+ALF +L X XXXXXXXXXXXXX S+FGSG + S +PT F+ C+FI N A ++GGA++SAAG+D + NSVF+GNSA GGALRLAG A+ S EGAAVSNIG +S++ N+SF GNGF C F Sbjct: 798 GGAVATNALSTSNSI---LFINGTTIFSDNSAGGNGGGMALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSGTDE---SGDLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTF 1000 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10257.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10257.276.1 >prot_Ecto-sp13_S_contig10257.276.1 ID=prot_Ecto-sp13_S_contig10257.276.1|Name=mRNA_Ecto-sp13_S_contig10257.276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp NRVTGDAAAGGIICAVFASTINWSGGLTRFIGSSSTFVGGALYVSGSEVTback to top mRNA from alignment at Ecto-sp13_S_contig10257:2..926+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10257.276.1 ID=mRNA_Ecto-sp13_S_contig10257.276.1|Name=mRNA_Ecto-sp13_S_contig10257.276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:2..926+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10257:2..926+ >mRNA_Ecto-sp13_S_contig10257.276.1 ID=mRNA_Ecto-sp13_S_contig10257.276.1|Name=mRNA_Ecto-sp13_S_contig10257.276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:2..926+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |