mRNA_Ecto-sp13_S_contig10248.272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.210e-75 Identity = 119/135 (88.15%), Postives = 121/135 (89.63%), Query Frame = 1 Query: 4 GVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKHPA-------------EFREWLIKCH 369 GVIHYYPY+GE ETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNA+YLPPKHPA EFREWLIKCH Sbjct: 450 GVIHYYPYDGEKETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNANYLPPKHPAVIYPGVRGRNIQKEFREWLIKCH 584
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.110e-29 Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1 Query: 4 GVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN 171 GVIHYYPY+GENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKP+ Sbjct: 483 GVIHYYPYDGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPH 538
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A8B6XHX9_HYDVU (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XHX9_HYDVU) HSP 1 Score: 79.3 bits (194), Expect = 8.890e-15 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369 QG + Y+P N ET P E + S + FW+GRL P S+ L F + +K+R+ L + RI+G+LFF+++ PISNNKLK+ + DL A++ + K P EF++WL +CH Sbjct: 454 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 574
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: T2MK06_HYDVU (Structural maintenance of chromosomes flexible hinge domain-containing protein 1 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MK06_HYDVU) HSP 1 Score: 79.3 bits (194), Expect = 8.920e-15 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369 QG + Y+P N ET P E + S + FW+GRL P S+ L F + +K+R+ L + RI+G+LFF+++ PISNNKLK+ + DL A++ + K P EF++WL +CH Sbjct: 508 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 628
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: UPI001F5F2D4D (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X1 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5F2D4D) HSP 1 Score: 79.3 bits (194), Expect = 9.490e-15 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369 QG + Y+P N ET P E + S + FW+GRL P S+ L F + +K+R+ L + RI+G+LFF+++ PISNNKLK+ + DL A++ + K P EF++WL +CH Sbjct: 454 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 574
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A7S2G7B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7B0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 6.410e-12 Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 91 IEAFWEGRLVPESHAAWLPFFPSHKP---NKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQ 276 ++ FW+ RLVP+S L FFPS+ + + R+ LG W +RI G +FFDW+FPISNNKL L+ Sbjct: 26 LDIFWQKRLVPDSVLPRLHFFPSYTGTGLSAQVRDGLGPLWMQRIHGSIFFDWHFPISNNKLYLK 90
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A6A5BHS3_NAEFO (SMC hinge domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BHS3_NAEFO) HSP 1 Score: 59.3 bits (142), Expect = 9.750e-8 Identity = 41/137 (29.93%), Postives = 62/137 (45.26%), Query Frame = 1 Query: 1 QGVIHYYPYNGENETRP-----------QVRPDEE---DDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKHPAEFREWLIKCH 369 +G+I+YYP+ ET P V D+E + + E FW GRL+ LP+ + N+ + + RR+KGMLFFD+ F +S NK+ L LN Y +R+W+ +CH Sbjct: 656 RGIIYYYPFKQGRETLPIPEELYLEGGKYVPTDQEVPLSERNPGFECFWNGRLLANEKIKNLPWMEKERSNRD----IPDNCYRRVKGMLFFDYAFEVSANKMYLCKQTPLCQALLN--YTDRTLMQRYRKWIKECH 786
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A830HRP0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HRP0_9CHLO) HSP 1 Score: 55.5 bits (132), Expect = 2.170e-6 Identity = 32/97 (32.99%), Postives = 49/97 (50.52%), Query Frame = 1 Query: 91 IEAFWEGRLVPESHAAWLPFFPS---HKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKH-PAEFREWLIKCH 369 E FWEGRL+P + A LPF + + K++ E+L R++G +F F + NKL + DL AL + +H FR+W+ +CH Sbjct: 790 FEVFWEGRLIPHTRVATLPFVETVRRRRTKKEDFESLPDEAFGRLRGAIFCGAGFRPTRNKLTMS---DDLAEALTRATAHDRHLERSFRDWISRCH 883 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10248.272.1 >prot_Ecto-sp13_S_contig10248.272.1 ID=prot_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFback to top mRNA from alignment at Ecto-sp13_S_contig10248:1100..1786+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10248.272.1 ID=mRNA_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10248:1100..1786+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10248:1100..1786+ >mRNA_Ecto-sp13_S_contig10248.272.1 ID=mRNA_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10248:1100..1786+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |