mRNA_Ecto-sp13_S_contig10247.271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI) HSP 1 Score: 469 bits (1207), Expect = 4.860e-164 Identity = 228/244 (93.44%), Postives = 236/244 (96.72%), Query Frame = 1 Query: 1 QSKFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLGYTGEGEDLPTGTLDEQITRYFNDADLHETADYTHIIYIGNEDLNSHTAATVRYSIGGEGYVDPYVPFDLLFDVADDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGLSIYIDTPLGEIVRSIALTIRAEVQAVADEFPDQVRILDHFTLFSAIVDTPEVFENLGFVAPEGSFLADPCLD 732
+SKFRAFLPGAGS+TNGKMWPEWLNVPQELNFAT TASATETFRTRE C GYTGEGEDLPTGTLDEQITRYFNDADLHETADYTHIIYIGNEDLNSH+AAT RYSIGGEGYVDPYVPFD+LFDVADDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILL NIGNPEGLS YI TPLGEIVRSIALTIRAE QAVADEFPDQVRILD++TLFSAIVDTPE+FENLGFVAPEGSFL+DPCLD
Sbjct: 89 ESKFRAFLPGAGSMTNGKMWPEWLNVPQELNFATATASATETFRTRENCEGYTGEGEDLPTGTLDEQITRYFNDADLHETADYTHIIYIGNEDLNSHSAATARYSIGGEGYVDPYVPFDMLFDVADDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLGNIGNPEGLSSYIGTPLGEIVRSIALTIRAEAQAVADEFPDQVRILDNYTLFSAIVDTPEIFENLGFVAPEGSFLSDPCLD 332
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: D7FJN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN0_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.830e-72 Identity = 124/256 (48.44%), Postives = 164/256 (64.06%), Query Frame = 1 Query: 7 KFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLGYTGEGEDLPTGTLDEQITRYF----NDADL--HETADYTHIIYIGNEDLNSHTAATVRYSIGGEGYVDPYVPFDLLFDVA---------DDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGLSIYIDTPLGEIVRSIALTIRAEVQAVADEFPDQVRILDHFTLFSAIVDTPEVFENLGFVAPEGSFLADPCL 729
K A++P GS++NGK WP WL +P E NFAT + SAT+ FR+RE C GYTGEGED PT TL+EQI RYF +DA ET DYTH+I+IG +LN A RYSIGGEGY DP V FD +F+V + G T +I E+ +W GI RLIDAGVTG ILL+N+G+P+GL+ T ++ +AL +R+ + + ++ QVR+LD +TLF+A+VD +F +LGF EGS LAD C+
Sbjct: 89 KTAAYMPFEGSVSNGKAWPTWLRIPDEHNFATSSGSATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVDDASTTKDETLDYTHVIFIGTNELNRVVEAITRYSIGGEGYEDP-VAFDKVFEVNATTGFPVLDESGLPVPTFAPMIEEVLGAWDEGIGRLIDAGVTGRILLANVGSPKGLAGIAGTETATVLDQVALFLRSGAELLVAKYAGQVRMLDMYTLFAALVDDESLFTDLGFTPGEGSLLADSCI 343
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: D7FYC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC5_ECTSI) HSP 1 Score: 233 bits (593), Expect = 5.180e-71 Identity = 121/256 (47.27%), Postives = 164/256 (64.06%), Query Frame = 1 Query: 7 KFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLGYTGEGEDLPTGTLDEQITRYFND------ADLHETADYTHIIYIGNEDLNSHTAATVRYSIGGEGYVDPYVPFDLLFDVA---------DDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGLSIYIDTPLGEIVRSIALTIRAEVQAVADEFPDQVRILDHFTLFSAIVDTPEVFENLGFVAPEGSFLADPCL 729
K A++P GS+TNGK+WP WL +P E NFAT +A+AT+ FR+RE C GYTGEGED PT TL+EQI RYF + ++T DYTH+I+IG +L AA RYSIGGEGY DP V FD +F+V ++G T +I E+ +W GIARLI AGVTG ILL+N+G+ +GL T ++ I L +R+ + + D++ QVR+LD +TLF+A+VD +F +LGF EGS LA+ C+
Sbjct: 83 KTAAYMPFEGSVTNGKVWPTWLRIPDEHNFATSSATATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVDDTSTTTNDTLDYTHVIFIGINELIMAAAAVTRYSIGGEGYQDP-VAFDKVFEVNATTGLPVLDENGLPVPTFTPMIEEVLGAWDEGIARLIGAGVTGRILLANVGSLKGLDGIAGTETATVLDQITLVLRSGAELLVDKYAGQVRMLDMYTLFAALVDDESIFLDLGFTPGEGSLLAETCI 337
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: D7FJN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN5_ECTSI) HSP 1 Score: 232 bits (592), Expect = 1.660e-70 Identity = 123/254 (48.43%), Postives = 161/254 (63.39%), Query Frame = 1 Query: 7 KFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLGYTGEGEDLPTGTLDEQITRYF----NDADLHETADYTHIIYIGNEDLNSHTAATVRYSIGGEGYVDPYVPFDLLFDVAD---------DGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGLSIYIDTPLGEIVRSIALTIRAEVQAVADEFPDQVRILDHFTLFSAIVDTPEVFENLGFVAPEGSFLADPCL 729
K A++P GS++NGK WP WL +P E NFAT +ASAT+ FR+RE C GYTGEGED PT TL+EQI RYF N+ D ET DYTH+I+IG +LN A RYS GGEGY DP V F+ +F+V G T +I E+ +W GI RLI AGVTG ILL+N+G+P+GL+ T ++ S+A +R Q + ++ QVR+LD +TLF+A+VD +F +LGF EGS LAD C+
Sbjct: 85 KTSAYMPFEGSVSNGKAWPTWLRIPDEHNFATSSASATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVNETD--ETLDYTHVIFIGTNELNRVVEAITRYSTGGEGYEDP-VAFEKVFEVDATTGFPVFDASGLPVPTFAPMIEEVLGAWDEGIGRLIGAGVTGRILLANVGSPKGLTGIAGTETAILLDSVAQALRVGAQLLVAKYSHQVRMLDLYTLFAALVDDESIFTDLGFTPGEGSLLADSCI 335
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: D8LHV8_ECTSI (GDSL-like lipolytic enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHV8_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.640e-26 Identity = 75/239 (31.38%), Postives = 124/239 (51.88%), Query Frame = 1 Query: 34 GSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLGYTGEGEDLP--TGTLDEQITRYFNDADLHE-----TADYTHIIYIGNEDLNSHTAATVRYSIG---GEGYVDPYVPFDLLFDVADDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGL------SIYIDTPLGEIVRSIALTIRA----EVQAVADEFPDQVRILDHFTLFSAIVDTPEVFENLGF 690
G+ TNGK+W ++LN+P N+ATG+ +AT+TFR+++ C GYT + + TGTL EQ+T+Y D L + +++YTH I IG D+++ A R ++ G Y +P D+ F V ++ + + + +A LI+ GVTG IL+ N +P G+ +Y L E T+ ++ A++ DQVR+LD ++L + V ++F GF
Sbjct: 130 GTNTNGKVWAQYLNIPNVQNYATGSGTATDTFRSQQLCTGYTTKADKASRRTGTLGEQMTKYLKDFSLEDGKIGCSSEYTHFIGIGMNDVSNVAEAMQRTALAEYLGVTYTEPVSVDDMNF------------VTMMQGVTDDIVAAVATLIEMGVTGRILVPNFPSPFGVPAFDSPDVYYGLTLAEFYDQFITTMNTMLDLKLSALSSAGEDQVRVLDLYSLIDSSVHDRDIFNEEGF 356
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Match: A0A6H5KTW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.090e-14 Identity = 58/181 (32.04%), Postives = 80/181 (44.20%), Query Frame = 1 Query: 7 KFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETC-LGYTGEGEDLPTGTLDEQITRYFNDADLHETADYTHIIYIGNEDLNSHTAATVRYSIGGEGYVDPYVPFDLLFDVA---------DDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLSNIGNPEGLS 519
K A++P S +NG WP WL +P G A ET C L +T DYTH+ +IG ++N A RYS GG+ Y DP V F+ +F+V + T II E+ +W I RLI AG+TG I L+N+G+P+GL+
Sbjct: 50 KTSAYMPFDNSASNGIAWPTWLRIPD-----VGGAPLVETLFFVACCKLLFT-------------------------LAVDYTHVAFIGANEMNRVIEAITRYSTGGQSYQDP-VAFEKVFEVDATTGFPVLHESSLPVPTFAPIIEEVLGAWDEVIGRLIGAGITGRIHLANVGSPKGLA 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10247.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10247.271.1 >prot_Ecto-sp13_S_contig10247.271.1 ID=prot_Ecto-sp13_S_contig10247.271.1|Name=mRNA_Ecto-sp13_S_contig10247.271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp QSKFRAFLPGAGSLTNGKMWPEWLNVPQELNFATGTASATETFRTRETCLback to top mRNA from alignment at Ecto-sp13_S_contig10247:484..5933+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10247.271.1 ID=mRNA_Ecto-sp13_S_contig10247.271.1|Name=mRNA_Ecto-sp13_S_contig10247.271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10247:484..5933+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10247:484..5933+ >mRNA_Ecto-sp13_S_contig10247.271.1 ID=mRNA_Ecto-sp13_S_contig10247.271.1|Name=mRNA_Ecto-sp13_S_contig10247.271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10247:484..5933+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |