mRNA_Ecto-sp13_S_contig10243.270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10243.270.1 vs. uniprot
Match: D7FLH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH4_ECTSI) HSP 1 Score: 1505 bits (3896), Expect = 0.000e+0 Identity = 844/1034 (81.62%), Postives = 871/1034 (84.24%), Query Frame = 1 Query: 1 GLSLDVLNSIGVLRMEKPTATDSRSAESQPHDGDSAASREAEVADETAGDKDRGNSADSDLAGKKCGDATKKDRIPDNKPSVSSATSATSSGDAK-TEGSDEGEVWIALGTERGRLACWTLEDILESDATMMPGLKLRPVPDSLCPALRSSFNPYSLNVEPKKSSQAPPAFAAAATGVNVGRSMGSVSASVDASGVGVAESDHAGDGGVAASGATGTSGLIGDACFGDDDEDCSWRVPEASAPKAVWQGHSGAVSRIGSCSQPPCFFTLGEDGYQRTWSVKGKVLGQFALPNASETHHKRRQVCT*SWLVPHHNYERIPNYKL*KRVVYPLLHLLSYLLLN*HTLLFQL*MQPRARLFRNIGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTSSRGGSSFYKTVLDATSAAPTAAPPSPSAIPTPQTITFGERMASSGPSVAGRPASTPAAAGSHPSGASATSPARPGDCQENDRDALAAGRSKHGAADEAVPEPKPLAVTAKRRTEAAVAAKRQAEAERRQAALATIENHRSHHRAASARSPTAAQTATASSSGVNQEGKDSLARDSNSVATTLTGRPVSSSDHLRAARAADRKGNLSRTTMTRAFSAQSVRSGATLGYYGRDEVNVLSAISKNPSRIAVYNRITEGKQGNNGGEKSPEIAVAPVPSPHRRRPRTTPSTMRLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAADVSRAESGEGIRPAAGLAHAGGGKETPLGAMIGPGVGFGLNVGVVSEQPPPSRTVKMYRNAAREYGRGASAGQAMWMDLQRDVSIARTSSRCRRDTHSGRHVGGGTRSTAVSDLSSSSTSTFQDLPQIGTTSASEKVSWGARDDTGTGPEGSDLDDSDDEVQAILELEGGGVGSGRSTARHGRGGVGGVASAANDWFAATRHGRDDAVPGGTRVALNRGPGWEDTYAFRRSTARRAIKTSRIVSGKKKMPLLSSAATLSGKWNWDWCSRPLSALPADRIEYLLSKFDDEMSAPFGEARRP 3099
GLSLDVLNSIGVLRMEK TA DSRSAESQ G SA REAEV ET GD+DRG+SAD+D AGKK GDATKKDRIP+ KPSVSSATSA SSG AK TE DEGEVWIALGTERGRLACW LED+LESDAT++PGLKLRPVPDSLCPALRSSFNPYSLNVEPKKSSQAPP FAAAATGVNVG S+GS SASVDASG GVAES GDG VA SGATGTSGLIG+ACFGDDDEDCSWRVPEASAPKAVWQGHSGAVSRIGSCSQPPCFFTLGEDGYQRTWSVKGKVLGQFALPNASETHHKRR LF++IGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTSSRGGSSFYKTVLDATSAAP AAPPSPSA TPQT+TFGER ASSGP VAGR AS P GSHPSGA+ATSPARPGDCQENDRDALAAGRS+ GAA EAV EP PLAVTA RRTEAA AA+RQAEAERRQ ALATIE HRS HRAASA SP AAQT T SSGVNQEG+ LARDSNSVATTLTGRPVSS DHL AARAADRKG LSRTTMTRAFSAQSVRSGATLGYYGR+E+NVLSAISKNPSRIAVYNR+TE KQGNNGGE SPEIAVAPVPSPHRRRPRTTPSTMRLS XXXX STAAD SRAESGEG+RPAAGLA+AG GKETPLGAMIGPGVGFGLNVGV+SEQPPPSRTVKMYRNAAREYGRGASAGQAMWMDLQRDV +ART SRCRRD HSGRHVGGGT S V DLSSSSTSTFQDLPQIG TSASEKVSWGARDD+GTGPEGSDL+DSDDEVQAILELEGGGVGSG STARHGRGGVGGVASAANDWFAATRHGRDDAVPGGTRVALNRGPGWEDTYAFRRSTARRAIKTSRI+SGKK MPLLSSAATL GKWNWDWCSRPLSALPADRIEYL SKFDD+MSAPFGEARRP
Sbjct: 422 GLSLDVLNSIGVLRMEKSTANDSRSAESQQQHGGSAGPREAEVVGETGGDRDRGDSADTDQAGKKRGDATKKDRIPEQKPSVSSATSAASSGGAKITEEYDEGEVWIALGTERGRLACWALEDVLESDATLIPGLKLRPVPDSLCPALRSSFNPYSLNVEPKKSSQAPPVFAAAATGVNVGHSIGSASASVDASGSGVAESYRRGDGSVAESGATGTSGLIGEACFGDDDEDCSWRVPEASAPKAVWQGHSGAVSRIGSCSQPPCFFTLGEDGYQRTWSVKGKVLGQFALPNASETHHKRR-------------------------------------------------------LFQDIGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTSSRGGSSFYKTVLDATSAAPAAAPPSPSATSTPQTVTFGERTASSGPLVAGRAASAPVGVGSHPSGAAATSPARPGDCQENDRDALAAGRSERGAAGEAVAEPNPLAVTAPRRTEAAAAARRQAEAERRQVALATIEKHRSCHRAASACSPAAAQTDTVPSSGVNQEGRVRLARDSNSVATTLTGRPVSSGDHLGAARAADRKGKLSRTTMTRAFSAQSVRSGATLGYYGREELNVLSAISKNPSRIAVYNRVTEAKQGNNGGENSPEIAVAPVPSPHRRRPRTTPSTMRLSSSTAALSLSGESSSLTRSPSXXXXGKQQRSATVLSPPPSTAADDSRAESGEGVRPAAGLAYAGDGKETPLGAMIGPGVGFGLNVGVMSEQPPPSRTVKMYRNAAREYGRGASAGQAMWMDLQRDVPVARTGSRCRRDIHSGRHVGGGTTSATVLDLSSSSTSTFQDLPQIGNTSASEKVSWGARDDSGTGPEGSDLEDSDDEVQAILELEGGGVGSGSSTARHGRGGVGGVASAANDWFAATRHGRDDAVPGGTRVALNRGPGWEDTYAFRRSTARRAIKTSRILSGKK-MPLLSSAATLPGKWNWDWCSRPLSALPADRIEYLQSKFDDDMSAPFGEARRP 1399
BLAST of mRNA_Ecto-sp13_S_contig10243.270.1 vs. uniprot
Match: A0A6H5JHV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV9_9PHAE) HSP 1 Score: 1353 bits (3502), Expect = 0.000e+0 Identity = 792/1081 (73.27%), Postives = 827/1081 (76.50%), Query Frame = 1 Query: 1 GLSLDVLNSIGVLRMEKPTATDSRSAESQPHDGDSAASREAE--------------------------------VADETAGDKDRGNSADSDLAGKKCGDATKKDRIPDNKPSVSSATSATSSGDAKTEGSDEGEVWIALGTERGRLACWTLEDILESDATMMPGLKLRPVPDSLCPALRSSFNPYSLNVEPKKSSQAPPAFAAAATGVNVGRSMGSVSASVDASGVGVAESDHAGDGGVAASGATGTSGLIGDACFGDDDEDCSWRVPEASAPKAVWQGHSGAVSRIGSCSQPPCFFTLGEDGYQRTWSVKGKVLGQFALPNASETHHKRRQVCT*SWLVPHHNYERIPNYKL*KRVVYPLLHLLSYLLLN*HTLLFQL*MQPRARLFRNIGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTSSRGGSSFYKTVLDATSAAPTAAPPSPSAIPTPQTITFGERMASSGPSVAGRPASTPAAAGSHPSGASATSPARPGDCQENDRDALAAGRSKHGAADEAVPEPKPLAVTAKRRTEAAVAAKRQAEAERRQAALATIENHRSHHRAASARSPTAAQTATASSSGVNQEGKDSLARDSNSVATTLTGRPVSSSDHLRAARAADRKGNLSRTTMTRAFSAQSVRSGATLGYYGRDEVNVLSAISKNPSRIAVYNRITEGKQGNNGGEKSPEIAVAPVPSPHRRRPRTTPSTMRLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAADVSRAESGEGIRPAAGLAHAGGGKETPLGAMIGPGVGFGLNVGVVSEQPPPSRTVKMYRNAAREYGRGASAGQAMWMDLQRDVSIARTSSRCRRDTHSGR--------HVGG--------GTRSTAVSDLSSSSTSTFQDLPQIGTTSASEKVSWGARDDTGTGPEGSDLDDSDDEVQAILELEGGGVGSGRSTARHGRGGVGGVASAANDWFAATRHGRDDAVPGGTRVALNRGPGWEDTYAFRRSTARRAIKTSRIVSGKKKMPLLSSAATLSGKWNWDWCSRPLSALPADRIEYLLSKFDDEMSAPFGEARRP 3099
GLSLDVLNSIGVLRMEK TATDSRSAESQ +DG SAASREAE V ET GD+DRGNSADSD KK GD TKKDRIPDN+PSVSSA SATS+G AK EG+DEGEVWIALGTERGRLACW LEDILESDAT+MPG KLRPVPDSLCPALRSSFNPYSLNVEP+KSSQAPPAFAAAATGVNVGR MGSVSASV+ASG GVAESD G+G VAASGATGTSGLIGDACFGDDDEDCS RVPEASA KAVWQGHSGAVSRIGSCS+PPCFFTLGEDGYQRTWSVKGK HT+LF L QPRARLFRNIGWSFLVDTVRVRPLHEEMTA LLDEVER RAQKTSRRSTSSRGG SFYKTVLDATSAAPTAA PSPSAI TPQ++TFGERMASSGP VAG ASTPA+ GSHPSGA+ATSP+RPGDCQENDRDALAAGRSKHGAA EAVPEP PL VTA RRTEAAVAAKRQ EAERRQAALATIE HRS HRAASARSP AAQT+TA+SSGVNQEGKD LAR SNSVATTLTGRPVSS DHL AARAADRKGNLS TTMTRAFS QSVRSGATLGYYGR+EV VLSAISKNPSRIAVYNRITE KQGN GE SPEIAVAPVPSP RRRPRT PST+RLS STAAD RAESGEG+RPA GLAHAGGG++TPLGAMIGPGVG GLNVGVVSEQPPPSRT KMYRNAAREYGRGASAGQAMWM + R + R R + H+ G G R + +++ S+ G VSWGARDD GTGPEGSDLDDSDDEVQAI ELEGGGVGSG STARHGRGGV GVASAANDWFAATRHGRDDAVPGGTRVAL+RGPGWEDTYAF+RSTARRAIK+SRIVSGKK MPLLSSAATL GKWNWDWCSRPLSALP DRIEYLLSKFDDEMSAPFGEARRP
Sbjct: 72 GLSLDVLNSIGVLRMEKSTATDSRSAESQHYDGGSAASREAEEAAYLNAAGVGSLGDLSSLPINPLSLMTLVFLVVGETGGDRDRGNSADSDQVRKKRGDVTKKDRIPDNEPSVSSAPSATSTGSAKPEGNDEGEVWIALGTERGRLACWALEDILESDATLMPGQKLRPVPDSLCPALRSSFNPYSLNVEPRKSSQAPPAFAAAATGVNVGRLMGSVSASVNASGSGVAESDRGGNGSVAASGATGTSGLIGDACFGDDDEDCSSRVPEASARKAVWQGHSGAVSRIGSCSKPPCFFTLGEDGYQRTWSVKGK-----------------------------------------------------------HTVLFLLQTQPRARLFRNIGWSFLVDTVRVRPLHEEMTAALLDEVERLRAQKTSRRSTSSRGGLSFYKTVLDATSAAPTAAHPSPSAISTPQSVTFGERMASSGPPVAGLAASTPASVGSHPSGAAATSPSRPGDCQENDRDALAAGRSKHGAAGEAVPEPNPLTVTAHRRTEAAVAAKRQEEAERRQAALATIEKHRSCHRAASARSPAAAQTSTAASSGVNQEGKDRLARGSNSVATTLTGRPVSSIDHLGAARAADRKGNLSPTTMTRAFSEQSVRSGATLGYYGREEVKVLSAISKNPSRIAVYNRITEEKQGN--GENSPEIAVAPVPSPRRRRPRTMPSTVRLSRSTAALSLGGEDSSLTQSTWSSSNGKRQRSSTVLSPPPSTAADNLRAESGEGVRPATGLAHAGGGEDTPLGAMIGPGVGLGLNVGVVSEQPPPSRTAKMYRNAAREYGRGASAGQAMWMFAVSEGHPPRPARRRRNEIRRRFRLVVKFYVHIAGPPSNWDHFGFRKSEDREVNRSTGRNTPIKKNAGV------VSWGARDDAGTGPEGSDLDDSDDEVQAIHELEGGGVGSGSSTARHGRGGVEGVASAANDWFAATRHGRDDAVPGGTRVALSRGPGWEDTYAFKRSTARRAIKSSRIVSGKKNMPLLSSAATLPGKWNWDWCSRPLSALPVDRIEYLLSKFDDEMSAPFGEARRP 1085
BLAST of mRNA_Ecto-sp13_S_contig10243.270.1 vs. uniprot
Match: A0A836CMC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC0_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.010e-9 Identity = 59/217 (27.19%), Postives = 82/217 (37.79%), Query Frame = 1 Query: 298 DEGEVWIALGTERGRLACWTLEDILESDATMMPGLKLRPVPDSLCPALRSSFNPYSLNVEPKKSSQAPPAFAAAATGVNVGRSMGSVSASVDASGVGVAESDHAGDGGVAASGATGTSGLIGDACFGDDDEDCSWRVPEASAPKAV-----WQGHSGAVSRIG-SCSQPPCFFTLGEDGYQRTWSVKGKVLGQFALPNASETHHKRRQVCT*SWLVP 930
+EG+V+IA GTE GR+ W L ++L + + L R +P+ CPA S+ P AT V GR + + + C V + P V WQ H G V +G S P C+FTLG+DG Q+ WS G +LG LPNA++ H +R W P
Sbjct: 1271 EEGDVYIAAGTESGRVLRWELSEVLGTLSDAHFALA-RLIPNKECPAHHRSYTPL-------------------ATLVKEGRIV-------------------------------------------EGSKSCGELVTSSPPPPIVGHSMEWQAHIGMVQVVGVGASAPRCWFTLGDDGVQQIWSAAGDLLGDILLPNATDEHIDQRGNPPPEWRFP 1424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10243.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10243.270.1 >prot_Ecto-sp13_S_contig10243.270.1 ID=prot_Ecto-sp13_S_contig10243.270.1|Name=mRNA_Ecto-sp13_S_contig10243.270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=684bp MQPRARLFRNIGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTback to top mRNA from alignment at Ecto-sp13_S_contig10243:3..5935- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10243.270.1 ID=mRNA_Ecto-sp13_S_contig10243.270.1|Name=mRNA_Ecto-sp13_S_contig10243.270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10243:3..5935- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10243:3..5935- >mRNA_Ecto-sp13_S_contig10243.270.1 ID=mRNA_Ecto-sp13_S_contig10243.270.1|Name=mRNA_Ecto-sp13_S_contig10243.270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10243:3..5935- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |