mRNA_Ecto-sp13_S_contig10238.265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10238.265.1
Unique NamemRNA_Ecto-sp13_S_contig10238.265.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10238.265.1 vs. uniprot
Match: A0A6H5KL59_9PHAE (Trimethylguanosine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL59_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.150e-46
Identity = 145/195 (74.36%), Postives = 149/195 (76.41%), Query Frame = 1 
Query:  169 QQAAMGGARAGGTAGPDAGVAPAXXXXXXXXXXXXXXXXXXSNNNAVKANQLKALLGLGTNAADAANGADADTGASPNGVVSSGSGXXXXXXXXXXXXXXXXXXXXQGHFIFSGAGNDGNPGVRRGDGMLLPXXXXXXXXXXPNVGEGAGEARAGGLAAEGGRSSSGNEDVSGEGGSGQTEDPSRVLKQLLGLKL 753
            QQAAMGGARAGGTAGPDA V PA        X  XXXXXXXSNNNAVKANQLKALLG+GT AADAANGADADTGAS  GVVSS    XXXXXXXXXXXXXXXXX  QG+F FSGAGNDGNPG                    PNVG+GAGEARA G+AAEGGRSSSG E VSG GGSGQTEDPSRVLKQLLGLKL
Sbjct:  772 QQAAMGGARAGGTAGPDADVVPAGARGGGVGXVGXXXXXXXSNNNAVKANQLKALLGMGTTAADAANGADADTGASSKGVVSSXX--XXXXXXXXXXXXXXXXXGAQGNFNFSGAGNDGNPG--------------------PNVGDGAGEARAAGIAAEGGRSSSGKEGVSGVGGSGQTEDPSRVLKQLLGLKL 944
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10238.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KL59_9PHAE1.150e-4674.36Trimethylguanosine synthase n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10238contigEcto-sp13_S_contig10238:3978..5158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1181
Hectar predicted targeting categoryother localisation
Exons1
Cds size633
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.183771-UTR-Ecto-sp13_S_contig10238:3977..41001681462518.183771-UTR-Ecto-sp13_S_contig10238:3977..4100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10238 3978..4100 +
1681462518.1997786-UTR-Ecto-sp13_S_contig10238:4733..51581681462518.1997786-UTR-Ecto-sp13_S_contig10238:4733..5158Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10238 4734..5158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.1919832-CDS-Ecto-sp13_S_contig10238:4100..47331681462518.1919832-CDS-Ecto-sp13_S_contig10238:4100..4733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10238 4101..4733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10238.265.1prot_Ecto-sp13_S_contig10238.265.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10238 4101..4733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10238.265.1

>prot_Ecto-sp13_S_contig10238.265.1 ID=prot_Ecto-sp13_S_contig10238.265.1|Name=mRNA_Ecto-sp13_S_contig10238.265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MLQQHQHQQWQQWQYQQAAMGGARAGGTAGPDAGVAPAGARGGGVGGVGG
GATAGGSNNNAVKANQLKALLGLGTNAADAANGADADTGASPNGVVSSGS
GGAAGAAPSDAPPPPPPPPAAQGHFIFSGAGNDGNPGVRRGDGMLLPPQQ
QQQQQQQPNVGEGAGEARAGGLAAEGGRSSSGNEDVSGEGGSGQTEDPSR
VLKQLLGLKL*
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mRNA from alignment at Ecto-sp13_S_contig10238:3978..5158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10238.265.1 ID=mRNA_Ecto-sp13_S_contig10238.265.1|Name=mRNA_Ecto-sp13_S_contig10238.265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1181bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10238:3978..5158+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCACGGCCACAGCCGCAGCCACAGCAAGACAACCAGCAGCAATTACA
GCAGCAGAGGGAACAGCAGTTGTACCACCAGCATCAGCAATGGCAACATT
GGCAGCACCATCAGCATCAGCTGATGCTGCAGCAGCATCAGCACCAGCAA
TGGCAGCAATGGCAGTACCAGCAGGCCGCCATGGGAGGCGCTCGCGCGGG
AGGCACGGCGGGCCCGGACGCAGGCGTCGCGCCTGCAGGAGCTCGTGGCG
GCGGTGTTGGCGGTGTGGGCGGCGGAGCAACCGCCGGGGGGAGCAACAAC
AACGCGGTCAAGGCGAACCAGCTGAAGGCGTTGCTAGGGCTGGGCACGAA
CGCCGCGGATGCTGCGAACGGTGCCGATGCCGACACGGGTGCCAGCCCCA
ACGGCGTCGTCAGCAGCGGTAGCGGGGGTGCGGCGGGCGCCGCTCCGAGC
GACGCACCTCCTCCTCCGCCGCCGCCGCCCGCGGCACAGGGTCATTTTAT
TTTTTCAGGCGCTGGTAACGACGGCAACCCTGGGGTAAGGCGCGGCGATG
GCATGCTACTGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAAAC
GTGGGCGAGGGGGCGGGGGAAGCGCGTGCGGGAGGTTTAGCAGCGGAAGG
TGGCCGAAGTTCGTCCGGTAATGAGGATGTTTCTGGTGAGGGGGGATCAG
GCCAAACCGAGGACCCTAGCAGGGTCCTGAAGCAGCTACTGGGACTGAAG
CTGTAGGCGTGTGTTCCTCTGCTGGGGGTTGAGCGGTGCTGGTGAGCGGC
GCGCCCGATGTGCTCGCTTCTCCTTGACACACGCGAGGCACAGAGATAAG
AGGGCAAGAGAGGTGGTACATTGTTTCGTTTTATTCTCTGTTTTTTATCG
TTTGGAGTGTATGTTCTCGTCGTTGCTTGGGTTAGCTTCCGGTATTGTAT
GTCGGTACGTACACTTCTACGGTTCCGCTGGATTGTTTTCGGTGTACAGG
GGGGAATGTGTGTGTGGATCGGCCCTCTGGCTTGTCGGCGGTTGTGGTAG
TGCCTGCGGTGGCAGCCTCGTATGTCGCGTTGTCGCGCGATCAAGTCAAG
TCCGCCACCCCCCTTCTTCCCCGACTAGCGCATCCCACCGCACTAACGCC
TCTGCCGTTCGTTGTTATGGTAGCTTTGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10238:3978..5158+

>mRNA_Ecto-sp13_S_contig10238.265.1 ID=mRNA_Ecto-sp13_S_contig10238.265.1|Name=mRNA_Ecto-sp13_S_contig10238.265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10238:3978..5158+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGCAGCATCAGCACCAGCAATGGCAGCAATGGCAGTACCAGCA
GGCCGCCATGGGAGGCGCTCGCGCGGGAGGCACGGCGGGCCCGGACGCAG
GCGTCGCGCCTGCAGGAGCTCGTGGCGGCGGTGTTGGCGGTGTGGGCGGC
GGAGCAACCGCCGGGGGGAGCAACAACAACGCGGTCAAGGCGAACCAGCT
GAAGGCGTTGCTAGGGCTGGGCACGAACGCCGCGGATGCTGCGAACGGTG
CCGATGCCGACACGGGTGCCAGCCCCAACGGCGTCGTCAGCAGCGGTAGC
GGGGGTGCGGCGGGCGCCGCTCCGAGCGACGCACCTCCTCCTCCGCCGCC
GCCGCCCGCGGCACAGGGTCATTTTATTTTTTCAGGCGCTGGTAACGACG
GCAACCCTGGGGTAAGGCGCGGCGATGGCATGCTACTGCCACCGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCAAACGTGGGCGAGGGGGCGGGGGAAGC
GCGTGCGGGAGGTTTAGCAGCGGAAGGTGGCCGAAGTTCGTCCGGTAATG
AGGATGTTTCTGGTGAGGGGGGATCAGGCCAAACCGAGGACCCTAGCAGG
GTCCTGAAGCAGCTACTGGGACTGAAGCTGTAG
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