mRNA_Ecto-sp13_S_contig10237.263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10237.263.1
Unique NamemRNA_Ecto-sp13_S_contig10237.263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 2.990e-90
Identity = 184/214 (85.98%), Postives = 185/214 (86.45%), Query Frame = 1
Query:    1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXX---GSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG 633
            MTSTAIYTCYRQLHPPTGVDHAVFGSVTAA SRDLVVAKASTLELYRVHRDDHS   XXXXXXXXXXXXXXXXXX    SGYYLELAGTFPLAGNITALAVIP                    DILVVSFGVAKMALVAYDSVLGRLET+SIHNFDAGAIGPGA GVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG
Sbjct:    1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXXASGYYLELAGTFPLAGNITALAVIP--------------------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG 194          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A1S8W3G5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W3G5_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-12
Identity = 60/218 (27.52%), Postives = 96/218 (44.04%), Query Frame = 1
Query:    7 STAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXX----------------GSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLP 612
            S+ +Y+  +++ PP+G+DHAV     A DSR +++A+ S L++Y V   D S+TA                                    G  +EL+  F L GNIT++ V+P+ +S                D L++ F  AKM+LV +     +L T+S+H F+              +    ++ DRP      DP GRC A  + G +L +LP
Sbjct:    2 SSTLYSLCKEIFPPSGIDHAVSARFLAPDSRSVIIARGSLLQVYLVLEQDVSSTASIPSGNADAASSTINGDHIQAGNHSHDQESGDTPKMGARMELSAQFRLHGNITSMGVVPMGSS-------------DRTDALLLGFKDAKMSLVEFSRTSQKLVTVSMHLFE-----------RDEFKKQGSI-DRPPPDIRVDPQGRCAAMRIYGDKLAILP 194          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A7K4YAT5_BUCAB (CPSF1 factor (Fragment) n=1 Tax=Bucorvus abyssinicus TaxID=153643 RepID=A0A7K4YAT5_BUCAB)

HSP 1 Score: 72.8 bits (177), Expect = 2.540e-11
Identity = 62/206 (30.10%), Postives = 93/206 (45.15%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGY----YLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARR 621
            +Y  Y+Q HPPTG++ A+F     A  R+LVVA  S L +YR++ D    T                     G      LEL  +F   GN+ ++A + +  +                D L++SF  AK+++V YD     L+TLS+H F+   +  G   V++ +         PR     DP GRC   ++ G +LVVLP RR
Sbjct:    1 MYAVYKQAHPPTGLEFAMFCHFFNAAERNLVVAGTSQLYVYRLNHDCEVPTGDPPTALGMPLGLPTLPHAAEGKGHKEKLELMASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGF--VQNVH--------TPRV--RVDPDGRCAVMLIYGTRLVVLPFRR 180          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A7L1GMJ6_9PICI (CPSF1 factor (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1GMJ6_9PICI)

HSP 1 Score: 70.9 bits (172), Expect = 1.160e-10
Identity = 60/204 (29.41%), Postives = 95/204 (46.57%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYY--LELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARR 621
            +Y  Y+Q HPPTG++ A+F    +   ++LVVA  S L +YR++ D  +                     G G+   LEL  +F   GN+ ++A + +  +                D L++SF  AK+++V YD     L+TLS+H F+   +  G   V++ +         PR     DP GRC   ++ G +LVVLP RR
Sbjct:    1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDCETPAPRVPPTLPHPVLE------GKGHKEKLELVASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDGF--VQNVH--------IPRV--RVDPDGRCAVMLIYGTRLVVLPFRR 172          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: V3ZQB0_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZQB0_LOTGI)

HSP 1 Score: 69.7 bits (169), Expect = 2.880e-10
Identity = 40/148 (27.03%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
            +Y+ Y+Q+H PTG++H+++ ++ + D ++LV+A  + L +YR++ D    T+                       LE  GT+ L GN+ +L  + +P +                D LV+SF  AK++++ YD     L+T S+H F+
Sbjct:    1 MYSVYKQIHKPTGIEHSIYCNLYSTDEKNLVLAGVNQLSIYRLNIDAEVITSSDGDKSEESRRTK----------LECVGTYSLFGNVMSLQAVRLPGAVR--------------DSLVLSFFDAKLSVLEYDPATHNLKTSSLHQFE 124          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: F4NVQ9_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVQ9_BATDJ)

HSP 1 Score: 69.7 bits (169), Expect = 2.920e-10
Identity = 56/212 (26.42%), Postives = 92/212 (43.40%), Query Frame = 1
Query:    7 STAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSA----------TAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLP 612
            S  +Y+  +++ PP+G+D+AV       D+R++V+A+ S L++++V   D +           +                        LELA  F + GNIT+L V+P+  S                D L++SF  AKM+LV Y     +L T+S+H F+              +    ++ DRP      DP G C A  + G +L +LP
Sbjct:    2 SNNLYSLCKEIFPPSGIDYAVSARFLTPDARNVVIARGSLLQVFKVIERDTTVAFSSSLNNLNSTDLDTNGDQAKTTKDQDIPPKAACLELAAQFRVHGNITSLGVVPMNYSGKA-------------DALLLSFKEAKMSLVEYSQFTQKLVTVSMHYFE-----------REEFKKLGSI-DRPPPEIKVDPQGYCAAMRIYGDRLAILP 188          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: S4RE76_PETMA (Cleavage and polyadenylation specific factor 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE76_PETMA)

HSP 1 Score: 68.6 bits (166), Expect = 6.190e-10
Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
            +Y+ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+  D  S +                        LE   +F L GNI ++A + +  S+               D L+++F  AK+++V YD     L+TLS+H F+
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHDTESVSKGDKPTDGKPRKDK----------LEFMSSFSLFGNIMSMASVRLSGSSR--------------DALLLAFMDAKLSVVEYDPATHDLKTLSLHYFE 124          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: UPI0014035BA0 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035BA0)

HSP 1 Score: 68.6 bits (166), Expect = 7.170e-10
Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
            +Y+ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+  D  S +                        LE   +F L GNI ++A + +  S+               D L+++F  AK+++V YD     L+TLS+H F+
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHDTESVSKGDKPTDGKPRKDK----------LEFMSSFSLFGNIMSMASVRLSGSSR--------------DALLLAFMDAKLSVVEYDPATHDLKTLSLHYFE 124          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A2K6AD84_MANLE (Cleavage and polyadenylation specific factor 1 n=2 Tax=Cercopithecinae TaxID=9528 RepID=A0A2K6AD84_MANLE)

HSP 1 Score: 66.6 bits (161), Expect = 1.220e-9
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGV 492
            +Y  Y+Q HPPTG++ A++ +      R+LVVA  S L +YR++RD  + T                        LELA +F   GN+ ++A + +  +                D L++SF  AK+++V YD     L+TLS+H F+   +   AAGV
Sbjct:    1 MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSAEGKAHREK----------LELAASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDRAAGV 135          
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: UPI0009A38663 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A38663)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-9
Identity = 46/148 (31.08%), Postives = 71/148 (47.97%), Query Frame = 1
Query:   16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
            +Y  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+  D  S+                    G    LE   +F L GN+ ++A + +  S                D L++SF  AK+++V YD     L+TLS+H F+
Sbjct:    1 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVK----------GRKEKLEQMASFSLFGNVMSIASVQLAGSKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI2.990e-9085.98Cleavage and polyadenylation specificity factor CG... [more]
A0A1S8W3G5_9FUNG1.210e-1227.52Uncharacterized protein (Fragment) n=1 Tax=Batrach... [more]
A0A7K4YAT5_BUCAB2.540e-1130.10CPSF1 factor (Fragment) n=1 Tax=Bucorvus abyssinic... [more]
A0A7L1GMJ6_9PICI1.160e-1029.41CPSF1 factor (Fragment) n=1 Tax=Indicator maculatu... [more]
V3ZQB0_LOTGI2.880e-1027.03Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
F4NVQ9_BATDJ2.920e-1026.42Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
S4RE76_PETMA6.190e-1029.73Cleavage and polyadenylation specific factor 1 n=2... [more]
UPI0014035BA07.170e-1029.73cleavage and polyadenylation specificity factor su... [more]
A0A2K6AD84_MANLE1.220e-930.19Cleavage and polyadenylation specific factor 1 n=2... [more]
UPI0009A386632.040e-931.08cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10237contigEcto-sp13_S_contig10237:2043..2675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score302.4
Seed ortholog evalue1.7e-79
Seed eggNOG ortholog2880.D7G8W8
Model size633
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
Cds size633
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.0683582-CDS-Ecto-sp13_S_contig10237:2042..26751681462518.0683582-CDS-Ecto-sp13_S_contig10237:2042..2675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10237 2043..2675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10237.263.1prot_Ecto-sp13_S_contig10237.263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10237 2043..2675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10237.263.1

>prot_Ecto-sp13_S_contig10237.263.1 ID=prot_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MTSTAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHR
DDHSATAAAAAARDTSNGDERDDDDGSGYYLELAGTFPLAGNITALAVIP
VPTSASTTTTQQQRQQQQQQDILVVSFGVAKMALVAYDSVLGRLETLSIH
NFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQL
VVLPARRHVPG
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mRNA from alignment at Ecto-sp13_S_contig10237:2043..2675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10237.263.1 ID=mRNA_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2043..2675+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCCACCGCAATCTACACGTGCTACCGGCAGCTGCACCCGCCGAC AGGTGTCGACCACGCCGTCTTCGGTAGCGTCACCGCCGCCGACTCCCGCG ACCTGGTCGTCGCGAAGGCCTCCACCCTCGAATTGTACCGCGTGCATCGG GACGACCACAGCGCCACTGCCGCAGCAGCAGCGGCAAGGGATACGAGCAA CGGCGATGAGAGAGACGACGACGATGGAAGCGGCTACTACCTCGAGCTGG CCGGCACCTTTCCCCTGGCAGGAAACATCACCGCCCTCGCCGTCATCCCC GTGCCAACGAGCGCTTCTACCACCACGACGCAGCAACAGCGGCAGCAACA GCAGCAGCAGGACATTCTGGTGGTCTCCTTCGGGGTCGCAAAGATGGCCC TCGTGGCGTACGACTCCGTCCTCGGCCGCCTGGAGACTCTCTCCATCCAC AACTTCGACGCGGGCGCGATTGGCCCCGGTGCCGCCGGGGTCGAGTCCGG TTACGGCCTCGCCGCCGCCCTGAAGGACCGACCCAGGACCATCTCCTCCA GCGACCCTGCTGGCCGCTGCCTGGCGGCGGTCGTGGCCGGCTGCCAGCTA GTCGTTCTCCCCGCCCGGCGGCACGTGCCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10237:2043..2675+

>mRNA_Ecto-sp13_S_contig10237.263.1 ID=mRNA_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2043..2675+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCCACCGCAATCTACACGTGCTACCGGCAGCTGCACCCGCCGAC
AGGTGTCGACCACGCCGTCTTCGGTAGCGTCACCGCCGCCGACTCCCGCG
ACCTGGTCGTCGCGAAGGCCTCCACCCTCGAATTGTACCGCGTGCATCGG
GACGACCACAGCGCCACTGCCGCAGCAGCAGCGGCAAGGGATACGAGCAA
CGGCGATGAGAGAGACGACGACGATGGAAGCGGCTACTACCTCGAGCTGG
CCGGCACCTTTCCCCTGGCAGGAAACATCACCGCCCTCGCCGTCATCCCC
GTGCCAACGAGCGCTTCTACCACCACGACGCAGCAACAGCGGCAGCAACA
GCAGCAGCAGGACATTCTGGTGGTCTCCTTCGGGGTCGCAAAGATGGCCC
TCGTGGCGTACGACTCCGTCCTCGGCCGCCTGGAGACTCTCTCCATCCAC
AACTTCGACGCGGGCGCGATTGGCCCCGGTGCCGCCGGGGTCGAGTCCGG
TTACGGCCTCGCCGCCGCCCTGAAGGACCGACCCAGGACCATCTCCTCCA
GCGACCCTGCTGGCCGCTGCCTGGCGGCGGTCGTGGCCGGCTGCCAGCTA
GTCGTTCTCCCCGCCCGGCGGCACGTGCCCGGC
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