mRNA_Ecto-sp13_S_contig10237.263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 299 bits (766), Expect = 2.990e-90 Identity = 184/214 (85.98%), Postives = 185/214 (86.45%), Query Frame = 1
Query: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXX---GSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG 633
MTSTAIYTCYRQLHPPTGVDHAVFGSVTAA SRDLVVAKASTLELYRVHRDDHS XXXXXXXXXXXXXXXXXX SGYYLELAGTFPLAGNITALAVIP DILVVSFGVAKMALVAYDSVLGRLET+SIHNFDAGAIGPGA GVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG
Sbjct: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXXASGYYLELAGTFPLAGNITALAVIP--------------------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPG 194
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A1S8W3G5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W3G5_9FUNG) HSP 1 Score: 76.6 bits (187), Expect = 1.210e-12 Identity = 60/218 (27.52%), Postives = 96/218 (44.04%), Query Frame = 1
Query: 7 STAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXX----------------GSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLP 612
S+ +Y+ +++ PP+G+DHAV A DSR +++A+ S L++Y V D S+TA G +EL+ F L GNIT++ V+P+ +S D L++ F AKM+LV + +L T+S+H F+ + ++ DRP DP GRC A + G +L +LP
Sbjct: 2 SSTLYSLCKEIFPPSGIDHAVSARFLAPDSRSVIIARGSLLQVYLVLEQDVSSTASIPSGNADAASSTINGDHIQAGNHSHDQESGDTPKMGARMELSAQFRLHGNITSMGVVPMGSS-------------DRTDALLLGFKDAKMSLVEFSRTSQKLVTVSMHLFE-----------RDEFKKQGSI-DRPPPDIRVDPQGRCAAMRIYGDKLAILP 194
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A7K4YAT5_BUCAB (CPSF1 factor (Fragment) n=1 Tax=Bucorvus abyssinicus TaxID=153643 RepID=A0A7K4YAT5_BUCAB) HSP 1 Score: 72.8 bits (177), Expect = 2.540e-11 Identity = 62/206 (30.10%), Postives = 93/206 (45.15%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGY----YLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARR 621
+Y Y+Q HPPTG++ A+F A R+LVVA S L +YR++ D T G LEL +F GN+ ++A + + + D L++SF AK+++V YD L+TLS+H F+ + G V++ + PR DP GRC ++ G +LVVLP RR
Sbjct: 1 MYAVYKQAHPPTGLEFAMFCHFFNAAERNLVVAGTSQLYVYRLNHDCEVPTGDPPTALGMPLGLPTLPHAAEGKGHKEKLELMASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGF--VQNVH--------TPRV--RVDPDGRCAVMLIYGTRLVVLPFRR 180
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A7L1GMJ6_9PICI (CPSF1 factor (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1GMJ6_9PICI) HSP 1 Score: 70.9 bits (172), Expect = 1.160e-10 Identity = 60/204 (29.41%), Postives = 95/204 (46.57%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYY--LELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARR 621
+Y Y+Q HPPTG++ A+F + ++LVVA S L +YR++ D + G G+ LEL +F GN+ ++A + + + D L++SF AK+++V YD L+TLS+H F+ + G V++ + PR DP GRC ++ G +LVVLP RR
Sbjct: 1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDCETPAPRVPPTLPHPVLE------GKGHKEKLELVASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDGF--VQNVH--------IPRV--RVDPDGRCAVMLIYGTRLVVLPFRR 172
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: V3ZQB0_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZQB0_LOTGI) HSP 1 Score: 69.7 bits (169), Expect = 2.880e-10 Identity = 40/148 (27.03%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
+Y+ Y+Q+H PTG++H+++ ++ + D ++LV+A + L +YR++ D T+ LE GT+ L GN+ +L + +P + D LV+SF AK++++ YD L+T S+H F+
Sbjct: 1 MYSVYKQIHKPTGIEHSIYCNLYSTDEKNLVLAGVNQLSIYRLNIDAEVITSSDGDKSEESRRTK----------LECVGTYSLFGNVMSLQAVRLPGAVR--------------DSLVLSFFDAKLSVLEYDPATHNLKTSSLHQFE 124
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: F4NVQ9_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVQ9_BATDJ) HSP 1 Score: 69.7 bits (169), Expect = 2.920e-10 Identity = 56/212 (26.42%), Postives = 92/212 (43.40%), Query Frame = 1
Query: 7 STAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSA----------TAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLP 612
S +Y+ +++ PP+G+D+AV D+R++V+A+ S L++++V D + + LELA F + GNIT+L V+P+ S D L++SF AKM+LV Y +L T+S+H F+ + ++ DRP DP G C A + G +L +LP
Sbjct: 2 SNNLYSLCKEIFPPSGIDYAVSARFLTPDARNVVIARGSLLQVFKVIERDTTVAFSSSLNNLNSTDLDTNGDQAKTTKDQDIPPKAACLELAAQFRVHGNITSLGVVPMNYSGKA-------------DALLLSFKEAKMSLVEYSQFTQKLVTVSMHYFE-----------REEFKKLGSI-DRPPPEIKVDPQGYCAAMRIYGDRLAILP 188
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: S4RE76_PETMA (Cleavage and polyadenylation specific factor 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE76_PETMA) HSP 1 Score: 68.6 bits (166), Expect = 6.190e-10 Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
+Y+ +R++HPPTG++HAV+ ++ R+LVVA S L++YR+ D S + LE +F L GNI ++A + + S+ D L+++F AK+++V YD L+TLS+H F+
Sbjct: 1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHDTESVSKGDKPTDGKPRKDK----------LEFMSSFSLFGNIMSMASVRLSGSSR--------------DALLLAFMDAKLSVVEYDPATHDLKTLSLHYFE 124
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: UPI0014035BA0 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035BA0) HSP 1 Score: 68.6 bits (166), Expect = 7.170e-10 Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
+Y+ +R++HPPTG++HAV+ ++ R+LVVA S L++YR+ D S + LE +F L GNI ++A + + S+ D L+++F AK+++V YD L+TLS+H F+
Sbjct: 1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHDTESVSKGDKPTDGKPRKDK----------LEFMSSFSLFGNIMSMASVRLSGSSR--------------DALLLAFMDAKLSVVEYDPATHDLKTLSLHYFE 124
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: A0A2K6AD84_MANLE (Cleavage and polyadenylation specific factor 1 n=2 Tax=Cercopithecinae TaxID=9528 RepID=A0A2K6AD84_MANLE) HSP 1 Score: 66.6 bits (161), Expect = 1.220e-9 Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFDAGAIGPGAAGV 492
+Y Y+Q HPPTG++ A++ + R+LVVA S L +YR++RD + T LELA +F GN+ ++A + + + D L++SF AK+++V YD L+TLS+H F+ + AAGV
Sbjct: 1 MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSAEGKAHREK----------LELAASFSFFGNVMSMASVQLAGAKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDRAAGV 135
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Match: UPI0009A38663 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A38663) HSP 1 Score: 67.0 bits (162), Expect = 2.040e-9 Identity = 46/148 (31.08%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRDDHSATAXXXXXXXXXXXXXXXXXXGSGYYLELAGTFPLAGNITALAVIPVPTSASXXXXXXXXXXXXXXDILVVSFGVAKMALVAYDSVLGRLETLSIHNFD 459
+Y YRQ HPPTG++ A++ S + R+LVVA S L++YR+ D S+ G LE +F L GN+ ++A + + S D L++SF AK+++V YD L+TLS+H F+
Sbjct: 1 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVK----------GRKEKLEQMASFSLFGNVMSIASVQLAGSKR--------------DALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10237.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10237.263.1 >prot_Ecto-sp13_S_contig10237.263.1 ID=prot_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp MTSTAIYTCYRQLHPPTGVDHAVFGSVTAADSRDLVVAKASTLELYRVHRback to top mRNA from alignment at Ecto-sp13_S_contig10237:2043..2675+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10237.263.1 ID=mRNA_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2043..2675+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10237:2043..2675+ >mRNA_Ecto-sp13_S_contig10237.263.1 ID=mRNA_Ecto-sp13_S_contig10237.263.1|Name=mRNA_Ecto-sp13_S_contig10237.263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2043..2675+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |