Homology
BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Match:
A0A6H5JVW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW6_9PHAE)
HSP 1 Score: 612 bits (1578), Expect = 7.710e-214
Identity = 320/360 (88.89%), Postives = 328/360 (91.11%), Query Frame = 1
Query: 1 RDVLMVTVLDRSPPPSSAAPDGRTRPAYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEQAQELASDCSAVGRDDGDPRGRGGANSGFGSEVLRRGGESTVQLAIYWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGVEKASDFFLFGDPRLRAAALVASAVSLSLGSAVVAXXXXXXXPVVLAXXXXXXATFATLAPPALALTWVFACTGPACEQLWRPLLVWTGTRWGSFRRLLLLPLEIEAESWGEGGDGGDQGVLLTGPETFAMGEEAARRWLPPPSAADGRQAEEQPNAIIPVGGEGSQDRGGGVRNGGNAADAGAVVLLLACYQNLIGVLHTGLEASRWRPRPR 1080
RDVLMVTVLDRS PPSSAAPDGRTRP YVAEAKPLRCTHWGSGGRPTRRTCVVAPPE+AQELAS SAV RD GDPRGRGGA SG GSEVLRRGGESTVQLAI WSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGG EKASDFFLFGDPRL+AAALVA AVS+SLGSAVV PV+LA ATFATL PPALALTWVFACTGPACEQLWRPLLVWTGTRWG FRRLLLLPLEIEAES GEGGDGGD+GVLL G ET AMGEE ARRWLPPPSAADGRQAEE+PNAIIPVGGEGSQ+RGGGVRNGGNAADAGAVVLLLACYQNLIGVLH+GLEASRWRPRPR
Sbjct: 74 RDVLMVTVLDRSSPPSSAAPDGRTRPLYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEEAQELASGGSAVDRDGGDPRGRGGATSGVGSEVLRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGAEKASDFFLFGDPRLKAAALVAFAVSMSLGSAVVVAAAACFLPVMLALSAAAAATFATLGPPALALTWVFACTGPACEQLWRPLLVWTGTRWGLFRRLLLLPLEIEAESLGEGGDGGDRGVLLKGLETSAMGEETARRWLPPPSAADGRQAEEKPNAIIPVGGEGSQERGGGVRNGGNAADAGAVVLLLACYQNLIGVLHSGLEASRWRPRPR 433
BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Match:
D7FN99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN99_ECTSI)
HSP 1 Score: 327 bits (838), Expect = 9.930e-104
Identity = 175/208 (84.13%), Postives = 180/208 (86.54%), Query Frame = 1
Query: 73 RPAYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEQAQELASDCSAVGRDDGDPRGRGGANSGFGSEVLRRGGESTVQLAIYWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGVEKASDFFLFGDPRLRAAALVASAVSLSLGSAVVAXXXXXXXPVVLAXXXXXXATFATLAPPALALTWVFACTGPACEQLWRPLL 696
RP YVAEAKPLRCTHWGSGGRPTRRTCVVAP E+ QELAS SAVGR+ DPRGRGGANSG SEV+RRGGESTVQLAI WSPAIRLKRPLSLVARAGRLTA VVSRKIDRPAAAVLNLGLGG EKASDF FGDPRL+AAALVASAVSLSLGSAVV PV+LA ATFATLAPPALALTWVFACTGPACEQLWRPLL
Sbjct: 71 RPPYVAEAKPLRCTHWGSGGRPTRRTCVVAPLEEVQELASGASAVGRNGVDPRGRGGANSGGWSEVVRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTAHVVSRKIDRPAAAVLNLGLGGAEKASDFLFFGDPRLKAAALVASAVSLSLGSAVVVAAAACFLPVMLALSAAAAATFATLAPPALALTWVFACTGPACEQLWRPLL 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.71e-214 / Id = 88.89 Expect = 9.93e-104 / Id = 84.13 Sequence A0A6H5JVW6_9PHAE D7FN99_ECTSI
Match Name E-value Identity Description
A0A6H5JVW6_9PHAE 7.710e-214 88.89 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FN99_ECTSI 9.930e-104 84.13 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1922 Hectar predicted targeting category other localisation Exons 4 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-15_003510.1 Cds size 1071
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462517.866699-UTR-Ecto-sp13_S_contig10234:151..163 1681462517.866699-UTR-Ecto-sp13_S_contig10234:151..163 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10234 152..163 + 1681462517.9117372-UTR-Ecto-sp13_S_contig10234:3304..4143 1681462517.9117372-UTR-Ecto-sp13_S_contig10234:3304..4143 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10234 3305..4143 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462517.875364-CDS-Ecto-sp13_S_contig10234:163..547 1681462517.875364-CDS-Ecto-sp13_S_contig10234:163..547 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10234 164..547 + 1681462517.8836977-CDS-Ecto-sp13_S_contig10234:1100..1400 1681462517.8836977-CDS-Ecto-sp13_S_contig10234:1100..1400 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10234 1101..1400 + 1681462517.8947253-CDS-Ecto-sp13_S_contig10234:2431..2599 1681462517.8947253-CDS-Ecto-sp13_S_contig10234:2431..2599 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10234 2432..2599 + 1681462517.9034002-CDS-Ecto-sp13_S_contig10234:3085..3304 1681462517.9034002-CDS-Ecto-sp13_S_contig10234:3085..3304 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10234 3086..3304 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10234.261.1
>prot_Ecto-sp13_S_contig10234.261.1 ID=prot_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
MVTVLDRSPPPSSAAPDGRTRPAYVAEAKPLRCTHWGSGGRPTRRTCVVA back to top mRNA from alignment at Ecto-sp13_S_contig10234:152..4143+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10234.261.1 ID=mRNA_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10234:152..4143+ (Ectocarpus species13 EcNAP12_S_4_19m)AGGGACGTACTG ATGGTCACGGTGCTGGATAGATCCCCTCCGCCCTCTTC
CGCGGCACCGGACGGCCGAACGAGACCAGCCTACGTAGCCGAGGCCAAGC
CGCTCCGGTGCACGCACTGGGGCTCGGGGGGGCGCCCAACCCGCCGCACT
TGCGTCGTGGCACCCCCGGAGCAAGCCCAAGAACTGGCTTCGGATTGTTC
GGCCGTCGGCCGGGACGATGGTGATCCCCGCGGGCGGGGCGGGGCAAACA
GCGGGTTCGGGAGTGAGGTCCTTCGCCGGGGGGGGGAGTCGACGGTCCAG
CTGGCGATCTACTGGTCGCCCGCGATTCGGCTCAAGCGGCCGCTGTCCCT
TGTGGCGCGGGCGGGGAGGCTGACGGCGCGTGTGGTTTCTCGGAAG GTTG
GCGGGGTGATTGGCCTTAGCGAGAGCGGTCCTTGACGGCGATGATTGTGC
GGAAAATATGCTCGTTTGGTGTTGTTGGTATGTTTGGGTGTCGTAGCACA
AGAGGTCTAAAGCTTCAACAGCCCGTCTGCGATAGTGCCGGACGGAAGCG
CTGGCACGATGTAGTCAGGGCCGGGTCTCTTCAAAGCCAAGGATGGAGCT
AGTTGGGGTGGAAACAGACCAAGCAAAAGAGGAAATTTCCCCATCAAAAT
CTTCCGCGACATTAGCTCGAAAAGCCCATAACCATCCTTGTCCGGTTGCG
AGGTGCAGGAGATTCTGGTGCGATTCACCCACGTCACGGTGTCCTCATTG
ATCACACTAGTTTAAGTTCCTACTGCATGTGGTTCTTGTACCCGTGTGTT
GCTGTTTTTTTCGCACGGCCCACCGCTTCGAACAAGCACCCCGATAGTCC
GGAAGGTTTGTCCGCGCAACCCCTCTCGCCTTGTTTCCATGACGAACCTC
ATGCGTTCATGCCACCCAATCCTTCCACCCCGTCCTCTCGTCCGCGCAGA
TCGACAGGCCGGCGGCGGCGGTGCTGAACCTCGGGTTGGGCGGGGTGGAG
AAGGCCTCCGACTTTTTCCTCTTTGGAGACCCCCGGCTGAGAGCGGCCGC
CCTAGTCGCGTCGGCGGTGTCCCTGTCCCTGGGGTCGGCGGTCGTCGCGG
CCGCAGCGGCGTTCTTCTTACCGGTCGTGCTGGCGCTGTCAGCGGCAGCT
GCGGCGACCTTCGCGACTCTCGCGCCGCCGGCATTGGCGTTGACCTGGGT
CTTCGCGTGCACGGGCCCCGCGTGCGAGCAGCTCTGGAGACCGCTGCTG G
TGAGAGCTCAAAGATTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTGGTGGGGGGGGCTTTTTGGTGTTCTTCTTTGTTAA
TGCCCTTTGGGGTCTCTTGCGTGGTTCGTCTCTTGAAGACTCATGTGCGG
AGGTCGAGCTGCTGCGATGCCGTCCTTTCTGCGACCTCATCGTGACAGTT
GCCGCGCAGTTTTCGTTGCTCGTGGTCTGAGGGCTTGTGGGTATTCAGTA
AAAGCCTTGAGCGGCAAACACAGCCTTGTTTTGCGACGCTGCTGCCACCG
GTGTTGGGGTGCAGCTGCTGATGGGCGTGAGAAAAAGGCCGATCGCAAGG
GAGTAGAGGGGAGCCACCCGACATGTGTTTTCGCTTGCTTCATTTTGCGC
GATGCCTGTCTCTGGTGTGTGCGACCTGCGCGTGTGCACATGTTGTCCAT
CACCGTATCGGAGCACGTCTAGATGTCCCCAGAAGGTCTTGACGGTTCCC
TTCTTTCTCACGGAGCGAGCTCCTCGTACATGTCTGGTTTGGTCGGTTTT
CGAGATCTTCTTCAAGGCGAAAATATCGTCGGTGGACAGCGCTTGTGCTG
TCGCGTCAGCCTAATCCCGCACGCCATGCATGCGCACTTCTCCGTAAGCA
GAGGGCTCTTTCTTTTCTGTCTCTCCATCCCGCTGTTGGTCTTTGGGCTA
TTTTGAAGTGGTAGACCATTGGTAGCGCCCTTTACCCGATGCGGCAGAGT
GTGTGTTCGAAGTCTTCTTGGGAGTGAATCATGCGTAATTCTACACCGAA
AGGCGGCAGAAATTCGCGCGTGTCCACGATTAAGAAGGAAAGAGATAGTT
CACCCTTCTCGCGTTAAGAAGCGAACGCAGGAACCGCAGGGAGGAGTAAG
GTAGGACAAAAGCGCGAACGTCCGTGTGTTAACTTCCTCCAGTGTGACCC
CGCTGGCTGATGTGTCAAACATACACGGAATTGCGTGGACCGGCGCCAGA
GAACAGACAAATAATACCTGATCCTGACAGGTATGGACCGGAACACGGTG
GGGTTCGTTTCGGAGATTGTTACTGCTGCCTTTGGAAATCGAGGCGGAAA
GCTGGGGGGAAGGTGGGGACGGTGGCGACCAGGGCGTTTTGTTGACGGGA
CCGGAAACGTTTGCCATGGGGGAGGAAGCTGCGCGGAGATGGTTGCCG GT
GAGATGCTATAGGACTCAACTTTGTTTTTGCTTCCAGGATGTTTTGTATC
GGGAAATTTGTCGTGTTTGTTTGGACGTGTTTGTTTGGATGAGGCTTATG
GGACAGGCTGTCGGAAAACGACGGGAAAAAGGAACAGAAGAAGGTGTATT
AAGGAAACAGGGGCAGTGCGTGATTAGACGTATTACCTTGATTTTGAAGC
TCAGAGTCACGGTGCTTTTTTCCGTTTCGTCTTCGCGCACCAGTATGTTT
GACGCCGACAGGCAACTCTAGAGTTACACGTCGTGTTGCCCCGGCCCAAT
TGCGTGACTTAAGCGTAAAAACCAGAGAAGAAGCACCCCTACGACGACCG
TCGAAGGGAATTTAATGTTCGTAGTGAACGCTAGAAGGCCAGAATACGGA
AGGACCGGCTCTAAATCAAGGTGTTGAGTCCCAGCCACAACCCAGCAACA
GAGGCGTCCATCCCCGGCCCCCTTGCACTCCCAGCCCCCCTCGGCAGCGG
ACGGACGGCAGGCCGAAGAGCAACCGAACGCCATTATTCCCGTTGGCGGT
GAGGGCAGTCAAGACAGAGGCGGCGGCGTACGAAACGGCGGGAACGCAGC
CGACGCGGGGGCGGTAGTTCTTCTCCTGGCATGCTACCAAAACCTGATCG
GGGTGCTGCACACCGGGCTGGAGGCGTCACGCTGGCGCCCTCGTCCGCGA
TGA AAAGGGAATTGACGCTGCCGAGGCAATCGCCGTGATGTGGAAGTCTG
GGGGTACTTGTATATGGATAAGGCTCACGCAACCTGCATCGGTATGGTGT
TGTGGTGACGGTGACAGGGCTCTTTCCGATTGGCGTGTTTTGTTGTTTTG
TTCACCCCTGCAAACTTCCTTCTTTGTTCCACCTTTGATCCTGCGCTCGT
GCTTTGAGCTTGGTTAAAATTCGGGGCAAGTTTCTCACACCAACTATTTT
GTTAGTGAGGTCTACGAAAAGCAGCGTGTGATCGATTGGGCTTTACCTGG
TCATGTCGTACACATGCTATTGTTTTCTCCGAGTCGAAGGCCTGACTGTC
ACTCGTCTTGTCCGTCGGACAGTGTAGATTTTTCTGTGCAAGTGAATGCG
TGCATGCGTGTGGCTACGCATCAACCGAAGTTTTTGTGTGCAGACTGGGT
TTTGCGTCGTGTTCCATCGGGGCGTACGCCCGGTAGTTTTGGGATACGTT
TCGGTGCCCCGAAGAACGCATTGGCCTTTGTCGGGCACTCTCTTAACTCT
TCGCCCCTCCTGCCTCTTGTCATGCGCACCCAGTAGAAGCTATAAATGGT
CGTGTACGTAGTCACCGACGCAAGTGCAGGCATACCCGGCATACGCCGGC
TCTATTGAGATCCGGACGTGTTGTCCCATAAGCTGCAGCCAGAGTTTTTC
AACTCAACACTTACGCATGATATTCTCGAGTATTTTCGCCAACAGTTCCT
ACGCGGCACTGTTGGTTCAGCCATCTCTCGCCGCAGTGCTGTACCGATAC
AAAAATAATCACGAGATGAGGAAAACGTTTCACCGACCACGG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10234:152..4143+
>mRNA_Ecto-sp13_S_contig10234.261.1 ID=mRNA_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10234:152..4143+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top