mRNA_Ecto-sp13_S_contig10233.260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI) HSP 1 Score: 816 bits (2108), Expect = 8.920e-294 Identity = 480/550 (87.27%), Postives = 488/550 (88.73%), Query Frame = 1 Query: 1 RPPPLTPRRYGPKRGASAAAVSPVVSTTPGSPVAVAARVTSQEESVRSTLRMKRAAEAIALEDARILAQAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARQAEKMRVRALRALVAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPGSKRAHSPPRKSRRPDDHRTNLARRVKDSAASRSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRARNPATEALVEELTRTMTDTEKRAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALHAGQLDSGVRVKVCADVSLHLAATRTHFLASRTFWSAGM 1650 RPP LTPRRYGPKRG SAAA SPV+ TTPGSPVAVAARV SQEESVRSTLRMKRAAEAIALEDARILA+ K Q XXXXXXXXXXXXXXXXXXXXXXX ARAR+AEKMRVRALRAL AREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAP KRAHSPPRKS+RPDDHRT LARRVKDSAA RSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR RN ATEALVEELT+TMTD EKRAFLHACLADAKECTHRPYTRSAA EEAKDGSGPG SIDAFLYRM AQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREA QAA Q MRT+ALGS RS DGAERERLFWEDIEDDFV+R LQEDAARRQ SLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPAL AGQLDSGV V CADVSLHLAATRTH LA RTFWSAG+ Sbjct: 17 RPPALTPRRYGPKRGVSAAAASPVLPTTPGSPVAVAARVISQEESVRSTLRMKRAAEAIALEDARILAEVKHQEXXXXXXXXXXXXXXXXXXXXXXXHGDDPAKEED--ARARKAEKMRVRALRALAAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPAYKRAHSPPRKSKRPDDHRTTLARRVKDSAA-RSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRTRNSATEALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAAARHRKGGAGDGATGGGEEAKDGSGPGASIDAFLYRMGAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAVQAATQSRMRTFALGSHRSYDGAERERLFWEDIEDDFVYR-LQEDAARRQESLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALRAGQLDSGVHVNFCADVSLHLAATRTHLLACRTFWSAGV 562
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A6H5JHI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI1_9PHAE) HSP 1 Score: 705 bits (1820), Expect = 1.720e-249 Identity = 453/607 (74.63%), Postives = 468/607 (77.10%), Query Frame = 1 Query: 4 PPPLTPRRYGPKRGASAAAVSPVVSTTPGSPVAVAARVTSQEESVRSTLRMKRAAEAIALEDARILAQAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAR--------------------QAEKMRVRALRALVAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPGSKRAHSPPRKSRRPDDHRTNLARRVKDSAASRSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR-------------------------------------------ARNPATEALVEELTRTMTDTEKRAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALHAGQLDSGVRVKVCADVSLHLAATRTHFLASRTF 1635 PPP TPRRYGPKRGASAAAV+PV+ TTPGSP+AVAARV SQEESVRSTLRMKRAAEAIALEDARILA+ KRQ XXXXXXXXXXXXXXXXXX XXXXXXXXXXXX ARAR QAEKMRVRALR L AREEAEID+DRAL LTLEVLRRKHADKRRGVST+PS PG+KRAHSPPRKSRRPD+HRT LARRVKDSAA R CGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR +RNPAT+ALVEELT+TMTD EKRAFLHACLADAKECTHRPYTRSAA EEAKDGSGPG SIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCP CGAEQSYDEVEEKRKI X EAEYRKPKTWASVRK +RT+ALGS RS DGAE ERLFWEDIEDDF R LQ DAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFS+LLYTFRLSPALH GQLDSGV VKV AD+SLHLAATRTH LASRTF Sbjct: 15 PPPPTPRRYGPKRGASAAAVAPVLPTTPGSPIAVAARVISQEESVRSTLRMKRAAEAIALEDARILAEVKRQEXXXXXXXXXXXXXXXXXXRTXXXXXXXXXXXXED-ARARGSLPSNPMSCCTLCPCMTKKQAEKMRVRALRVLAAREEAEIDQDRALALTLEVLRRKHADKRRGVSTLPSVPGNKRAHSPPRKSRRPDNHRTTLARRVKDSAA-RLCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRTRCGRVMTLVSSSNTSVAALAAREVQMKTRWYLVVRRQLASKVSRNPATDALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAVARHRRGGAGDGATGGGEEAKDGSGPGASIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPDCGAEQSYDEVEEKRKIXXXXEAEYRKPKTWASVRK------------------------IRTFALGSHRSYDGAEGERLFWEDIEDDFFCR-LQHDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSKLLYTFRLSPALHPGQLDSGVHVKVGADLSLHLAATRTHLLASRTF 594
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A482S3J2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3J2_9ARCH) HSP 1 Score: 117 bits (292), Expect = 3.290e-24 Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1 Query: 802 RAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAF--QAAMQGTMRTYALGSRRSCDG--------AERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQD-WTFRPTL 1443 R + L +A+ECT RP+ RSA E+ +D +F+ R +A+ER + ++ + G+ Y A++DK+VCP CGA+QSYDEV+EKRK+C NC EY P TWA VR F + + F SKR A QA M+ R Y +++ D R + E+ E +F FR ++E + A L+ LY++ ++F+PT+ Sbjct: 259 RTLRYLTLEEAQECTFRPHLRSAQKKNNR-------------EQREDDGAKEDPRFSFISRQEAEERNRREELQFKMGKKDYDALVDKKVCPQCGAKQSYDEVKEKRKLCVNCRVEYTNPMTWAKVRNKFWKKCQEF--SKRVALHKQAIMEEIEREYKFIIKKAVDEQGKVVEVMVPRSHILTEEEEQEF-FRRIEEKLLEKDAKLKRLDRELYEEKYSFKPTV 467
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: G4ZM67_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZM67_PHYSP) HSP 1 Score: 102 bits (255), Expect = 1.980e-19 Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 F+ RM+A ERA+ + R E AY A +DK+ CP CG QSY E+ +KRK CXNC Y+ W+ V K+FL R+E FQ+S +E + + + R AL R D E + WED+ D+F+ R LQ D R+ S + ++ +F P+++ ++++ Sbjct: 340 FVRRMEAAERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKEFLTRMEEFQQSCKERQRERQEESERQEALSCRPE-DDEEDAKKTWEDVRDEFLGR-LQLDLEYREMSRAVIWEEIQRECSFSPSITRRAQQL 501
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: D0NU37_PHYIT (Cleavage induced predicted protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NU37_PHYIT) HSP 1 Score: 100 bits (248), Expect = 1.320e-18 Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 F+ RM+A ERA+ + R E AY A +DK+ CP CG QSY E+ +KRK CXNC Y+ W+ V KDFL R+E FQ+ +++ Q Q L + D E R W+DI D+F+ R LQ D R+ S + + ++ +F P+++ ++++ Sbjct: 313 FVRRMEASERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKDFLTRMEEFQQQRKDR-QLEKQEEYERQELQYCKPEDDNEDTRKTWQDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQQL 474
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: W2PTR4_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PTR4_PHYPN) HSP 1 Score: 98.2 bits (243), Expect = 5.840e-18 Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 F+ RM+A ERA+ + R E AY +DK+ CP CG QSY E+ +KRK C NC Y+ W+ V KDFL R+E FQ+ ++ Q Q L + + D +E + WEDI D+F+ R LQ D R+ S + + ++ +F P+++ ++++ Sbjct: 327 FIRRMEAAERARREQLRRTREEAAYLDRVDKKECPSCGNPQSYSELTQKRKKCPNCGVTYKSRIAWSDVAKDFLTRMEEFQQQCKDR-QREKQEEFERQELQNCKLEDDSEDTKKTWEDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQQL 488
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A6A3SPW1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPW1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.090e-17 Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERE--RLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 F+ RM+A ERA+ + R E AY A +DK+ CP CG QSY E+ +KRK CXNC Y+ W+ V K+FL R+E FQ+S E + Q + R AL C + E + WE++ D+F+ R LQ D R+ S + + ++ +F P+++ ++++ Sbjct: 342 FVRRMEAAERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKEFLTRMEEFQQSCNERQREREQESERREAL----CCKPEDNEDTKKTWEEVRDEFLGR-LQLDLEYREMSRAAIWEQIQRECSFSPSITRRAQQL 502
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A8J5J0J6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J0J6_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.170e-16 Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVD 1470 F+ RM+A ERA+ + R E Y A +DK+ CP CG QSY E+ +KRK XNC Y+ W+ V +DFL R+E FQ+ +E + + R L + D + ++ W DI D+F+ R LQ D R+ S + + ++ +F P+++ ++ V D Sbjct: 325 FVRRMEAAERARREQLRRTREEAVYLARVDKKECPSCGNPQSYSELTQKRKKXXNCGVTYKSRIAWSDVARDFLTRMEEFQQQCKEKQREKREEYERQELLACKPENDNEDTKKT-WVDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQEVCD 488
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A329SVK4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SVK4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.050e-15 Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 F+ RM+A ERA+ + R E Y A +DK+ CP CG QSY E+ +KRK XNC Y+ W+ V +DFL R+E FQ+ +E + + R L + D + ++ W DI D+F+ R LQ D R+ S + + ++ +F P+++ ++ + Sbjct: 323 FVRRMEAAERARREQLRRTREEAVYLARVDKKECPSCGNPQSYSELTQKRKKXXNCGVTYKSRIAWSDVARDFLTRMEEFQQQCKEKQREKREEYERQELLTCKPEDDNEDTKKT-WVDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQEL 484
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A225W4K5_9STRA (Cleavage induced protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4K5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.110e-15 Identity = 53/154 (34.42%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 1003 AKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464 A+ + R E AY +DK+ CP CG QSY E+ +KRK C NC Y+ W+ V KDFL+R+E FQ+ +E + + R AL R D E + WE++ D+F+ R LQ D R+ S + + + +TF P++S ++++ Sbjct: 339 ARREQLRRTREEAAYLDRVDKKECPSCGNPQSYSELTQKRKKCPNCGVTYKSRIAWSDVAKDFLDRMEEFQQHCKERQREQQEENERREALACRPEND--ENAKKTWEEVRDEFLGR-LQLDLEYREMSKAAMWDEIERAYTFSPSISRRAQQL 489 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10233.260.1 >prot_Ecto-sp13_S_contig10233.260.1 ID=prot_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp MKRAAEAIALEDARILAQAKRQEEQRRRHSEHRVAASPPFPRPEDDHGDDback to top mRNA from alignment at Ecto-sp13_S_contig10233:1388..5870- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10233.260.1 ID=mRNA_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10233:1388..5870- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10233:1388..5870- >mRNA_Ecto-sp13_S_contig10233.260.1 ID=mRNA_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10233:1388..5870- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |