mRNA_Ecto-sp13_S_contig10230.258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI) HSP 1 Score: 224 bits (572), Expect = 5.320e-66 Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 1 Query: 1 QVSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQANAFLQSRDGPATPDIAGSTPPRGAATEVADADKKESNAVEALGLSSSSTAVGGGGVGSPLPTVDSATVCLVGAAPCTVDLDLLD 399
QVSSLYRD+SGP L PMTLRG+LRMARDAGLQERVGLTS DVKKMFKQANAFLQSRDGPATPDIAGSTPP GAAT+VAD D+KESN VEALGLSSS TAVGGGGVG PLPTVDSATVCLVGAAPCTVDLDLLD
Sbjct: 646 QVSSLYRDFSGPSLEPMTLRGLLRMARDAGLQERVGLTSEDVKKMFKQANAFLQSRDGPATPDIAGSTPPCGAATKVADPDRKESNPVEALGLSSS-TAVGGGGVGFPLPTVDSATVCLVGAAPCTVDLDLLD 777
BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.280e-63 Identity = 117/132 (88.64%), Postives = 122/132 (92.42%), Query Frame = 1 Query: 4 VSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQANAFLQSRDGPATPDIAGSTPPRGAATEVADADKKESNAVEALGLSSSSTAVGGGGVGSPLPTVDSATVCLVGAAPCTVDLDLLD 399
VSSLYR YSGPLL PMTLRG+LRMARDAGLQERVGLTS DVK++FKQANAFLQSRDGPATPDIAGSTPPRGA T+VAD DKKE N VEAL LSSS TA+GGGGVG PLPTVDSATVCLVGAAPCTVDLDLLD
Sbjct: 676 VSSLYRIYSGPLLVPMTLRGLLRMARDAGLQERVGLTSEDVKRIFKQANAFLQSRDGPATPDIAGSTPPRGAVTKVADPDKKEGNPVEALRLSSS-TALGGGGVGFPLPTVDSATVCLVGAAPCTVDLDLLD 806 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10230.258.1 >prot_Ecto-sp13_S_contig10230.258.1 ID=prot_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp QVSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQANback to top mRNA from alignment at Ecto-sp13_S_contig10230:4593..5438- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10230.258.1 ID=mRNA_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10230:4593..5438- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10230:4593..5438- >mRNA_Ecto-sp13_S_contig10230.258.1 ID=mRNA_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10230:4593..5438- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |