mRNA_Ecto-sp13_S_contig10228.253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10228.253.1
Unique Name	mRNA_Ecto-sp13_S_contig10228.253.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Match: D7G1P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P3_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 3.520e-171
Identity = 301/391 (76.98%), Postives = 318/391 (81.33%), Query Frame = 3

Query:   51 ISFWSQRFTAERRQDQEHISGLVQDANAVEAALLKEQQPLQGRNKSLARDDPCAAASRGDNASSEGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYMEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQLAVKPDAHEQXXXXXXXXXXXXXXXRMFAANDAGSRRAGPVAGSSAAPLLGKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAYVAG-NGRRRGGDRSSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPHTSSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRRRSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV 1220
            +++  +RFTAERRQDQ HISGLVQDANAVEAALLKEQQPLQGRN S  RDDPCAAASRGDNASS+GGGDAGGAVNTGGVEGSVGVRRIFSTKSNAY+E AEPKDDS FISLDQMRFMKYVYSHI+G+K AKAHTR MT+VVREEKQ+A +P+AHEQXXXXXXXXXXXXXX RMFA+N AGSRRAGPVAGSS  P++ K GEGG NSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSS NA VA  NGRRRGGD +SRQS                            S P  S L   S AMLPSS+T   A LPMPP VPPDN TSAFLARGGRWGGESRR SWR DSV TASSASYATYCKRDR Q R LGISRR  AVPALPV
Sbjct:   43 LAYLQKRFTAERRQDQAHISGLVQDANAVEAALLKEQQPLQGRN-SQGRDDPCAAASRGDNASSQGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYVETAEPKDDSKFISLDQMRFMKYVYSHIDGQKAAKAHTRLMTDVVREEKQMAARPNAHEQXXXXXXXXXXXXXXKRMFASNGAGSRRAGPVAGSSVPPVISKAGEGGCNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSANANVAAENGRRRGGDHNSRQSRPSHASVSTSSSLFTPKGEKSGRNTRSGSCPDISGLTNNSPAMLPSSATRPTAALPMPPTVPPDNVTSAFLARGGRWGGESRRGSWRCDSVTTASSASYATYCKRDRDQGRVLGISRRPPAVPALPV 432

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BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Match: A0A6H5L4T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T8_9PHAE)

HSP 1 Score: 489 bits (1258), Expect = 5.770e-168
Identity = 300/393 (76.34%), Postives = 314/393 (79.90%), Query Frame = 3

Query:   51 ISFWSQRFTAERRQDQEHISGLVQDANAVEAALLKEQQPLQGRNKSLARDDPCAAASRGDNASSEGGGDAGGA---VNTGGVEGSVGVRRIFSTKSNAYMEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQLAVKPDAHEQXXXXXXXXXXXXXXXRMFAANDAGSRRAGPVAGSSAAPLLGKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAYVAGNGRRRGGDRSSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPHTSSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRRRSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV 1220
            +++  +RF AERRQDQ HIS LVQDANAVEAALLKEQQPLQG N SLARDDPCAAASR  NA SEGGGDAGGA   V+TGGVEGSVGVRRI STKSNAYMEPA+PKDDSNFISLDQMRFMKY+YSHIEG+ GAKAHTR  TNVVREEKQ+AVKP+AH+Q XXXXXXXXXXXXXX            AGPVAGSSA PLL KGGEGGRNSGSRERQLLERKRGILLEMKGVV+RQAEALDRLVQSS NA VAGNGRRRGGDR+SR+S                            S PH SS IKKS AMLPS  T  KAELPMPP VP DNGTSAFLARGGRWGGESRRRSWRRDSV TASSASYATYCKRDR Q   LGI RR AAVPALPV
Sbjct:   43 LAYLQKRFIAERRQDQAHISELVQDANAVEAALLKEQQPLQGGNTSLARDDPCAAASRAYNAPSEGGGDAGGAAGAVDTGGVEGSVGVRRILSTKSNAYMEPADPKDDSNFISLDQMRFMKYMYSHIEGQNGAKAHTRLTTNVVREEKQIAVKPNAHKQRXXXXXXXXXXXXXXXXXXXXXXXXXXAGPVAGSSAPPLLSKGGEGGRNSGSRERQLLERKRGILLEMKGVVNRQAEALDRLVQSSANANVAGNGRRRGGDRNSRKSRPSQASVSTSSSLFTPNGATSGQNTRSGSCPHISSHIKKSPAMLPSPLTRPKAELPMPPTVPQDNGTSAFLARGGRWGGESRRRSWRRDSVTTASSASYATYCKRDRDQGM-LGIGRRPAAVPALPV 434

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G1P3_ECTSI	3.520e-171	76.98	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L4T8_9PHAE	5.770e-168	76.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10228:3135..5773-
coding sequence from alignment at Ecto-sp13_S_contig10228:3135..5773-

protein sequence of mRNA_Ecto-sp13_S_contig10228.253.1

>prot_Ecto-sp13_S_contig10228.253.1 ID=prot_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQ
LAVKPDAHEQRRRRRSSSSSSGGDKRMFAANDAGSRRAGPVAGSSAAPLL
GKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAY
VAGNGRRRGGDRSSRQSRSSQASVSTSSSLFTPKGATSGRNTRSGSYPHT
SSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRR
RSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV*

mRNA from alignment at Ecto-sp13_S_contig10228:3135..5773-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10228.253.1 ID=mRNA_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10228:3135..5773- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTTCTTCTTCCTCAGAAGCGAGCAGATCGTCAATCGGCGCCATATAG
ATCTCGTTCTGGTCCCAAAGGTGTGCTTAGTAGGCTTCCCGGACAACAAG
TTTTGGGGCCCCTGTATCGCGCGGCGCAACTTTGGCCGATACATACATCC
TTTTTTTCCCTCCTGGGGACGAAGGGAAAAATGTCGCCCGCATCGCTCGC
TCCGCTCGCTCCGCGTCTCATTATAACCTCGAGATCATCTCGCAACACCT
CGGGGCCTTCGTGTACAACTTGTTTTGGTGGAGGAACATAAGCTAGACAG
CAGGGTTTGATGACATGGGGCGTACTTCTTTGAGTTAAAACGACTTCGAA
TGTACGAAATCGTGGCCAACTTCCACCGGTTCCGGGGAGGAAATTTGTGC
AATACGTGTGTGAACCAAGGATGTACGTTACCGGTATACCGGTAATTTAC
CGGTTAAGGGTTGGGGTCGGTAAAGTAAAAATTTGCGGTAGTTCTCGACA
GTCTCGTGCTACCCCCCGCCCTCCTCATTAGCGGGCCCCCCTCAGCCTCT
GCCTTGCGAAGGGAAAAACGACAAAACAGCTGCTGCACAGCTTCCGCACT
CACCACATTGAGTCCCTCCCGAGGTCAGAGCATAGCTTATCTACAGCAGA
CCACCGCCACATAGGCACTGGAAGACGACAATGAATTCTTGGGGCTCGCT
TTCGAGCACCCCCGTGACAGTGATAGAGGAAAGTGTTGAAGACCACCAAC
CCCTTCTTGCGTTCGTAGACGTCTGGAAAACCCGGGGACAGTCGTTTTCC
ATCCACGCTTTCCGCGGTAATAACCGGTCGGTAACACCGATTGCTGGTTT
GCGGTAAATTACCGGTCGGTAAAGGGGTCTGACCTGGGAAACGTACATCC
CTGGTGTAAACTGCAGGAGCAATTACGCATCGAAAACTTGTTTAGTCCTC
ACCATATGTGGAACGATTATTCACATGCCAACTTTCAATTCGTCTGGCAC
CAGGTTCACCGCGGAGAGACGGCAAGATCAGGAACACATCTCCGGGCTCG
TGCAAGACGCGAATGCCGTGGAAGCCGCCCTCCTGAAGGAGCAGCAACCA
TTGCAAGGGCGCAACAAAAGCCTGGCCCGTGATGATCCTTGCGCAGCGGC
TTCCAGAGGCGATAATGCTTCTTCCGAAGGCGGCGGCGATGCCGGTGGTG
CTGTTAACACTGGTGGGGTGGAGGGTTCCGTGGGGGTCAGAAGAATCTTC
TCGACCAAGTCGAATGCCTACATGGAGCCGGCAGAGCCGAAAGACGACTC
AAACTTTATCTCTCTCGATCAGGTAATTTTCTCAAGTGGAACAAAGCTGG
CTCTACGGAGTGCATGCCGTTTGCTTTCTTCTGTTTATCGGGATAACATC
CTTGTTTTGTCTGTGTGGGACTGTGTGGGCAGGAATAAAGTTCCCAACTC
TCCGAGATCAAGCAGGCATGGATTTGCCTAGGTGGTGGATATTTCTTGTC
TATCCATGTCACAAGACATTGCTACTTCGGCGACGTCTGACTGGTTGCGG
ACACCAAGGCATCGTATTTAATCCTCGTTGCTTCACGTTGCTGCCGCACT
CCTTCCTGTTCCACTCAGATGCGTTTCATGAAATACGTGTACTCACACAT
CGAGGGACGAAAGGGGGCAAAGGCGCACACACGCCGCATGACCAACGTAG
TCCGCGAAGAAAAACAATTAGCGGTCAAGCCCGACGCACATGAACAGCGA
CGCCGCCGCCGAAGCAGCAGCAGTAGCAGCGGTGGGGACAAGAGGATGTT
CGCCGCCAACGACGCTGGCTCAAGGAGAGCGGGACCTGTAGCGGGGTCGA
GTGCTGCACCGCTGCTGGGCAAGGGCGGGGAAGGCGGTCGCAACTCCGGC
AGCAGAGAGCGGCAGCTTTTGGAGCGAAAGCGAGGGATTCTGCTGGAGAT
GAAGGGGGTCGTAAGCCGGCAAGCGGAGGCGCTAGACCGACTTGTCCAAA
GCAGCACCAACGCTTACGTAGCGGGAAATGGGCGAAGGAGAGGTGGTGAC
CGCAGCAGCAGACAAAGCCGGTCTTCCCAAGCAAGTGTCTCGACTTCAAG
CAGTCTGTTTACCCCCAAGGGAGCAACGAGTGGCCGAAACACCAGGAGCG
GGTCATACCCACATACCTCCAGCCTTATCAAAAAGTCTTCGGCCATGCTA
CCCTCTTCTTCGACAGGACGAAAAGCGGAGCTACCGATGCCTCCCGCGGT
GCCGCCAGACAACGGCACGTCTGCCTTTTTGGCCCGCGGGGGACGGTGGG
GTGGAGAGAGCCGGCGGCGGTCGTGGAGGCGCGATTCCGTCATAACAGCA
TCTTCGGCGTCGTACGCGACCTATTGCAAACGGGATCGTGTTCAGGATAG
GGAGCTCGGTATCAGCCGACGCCACGCGGCCGTCCCTGCGCTGCCGGTGT
AGGCTATTGGGGTGGAGCGCGGTAGGCGGCGTTCCGCGTTTCCGGTGCAC
CGTACCGCGTTCGCCAGCAACCGACGGAAGCGTATAGTTGACGGTTGTTG
TTGTTTTTGTTTTGGTTCTTCTGTAATCGAACCTTCGTGGTCTTGTTGTC
AAAGCGTTTTCTCCCTGTCCTTCCTCCAGTTAAGCCGAT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10228:3135..5773-

>mRNA_Ecto-sp13_S_contig10228.253.1 ID=mRNA_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10228:3135..5773- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCGGCAGAGCCGAAAGACGACTCAAACTTTATCTCTCTCGATCA
GATGCGTTTCATGAAATACGTGTACTCACACATCGAGGGACGAAAGGGGG
CAAAGGCGCACACACGCCGCATGACCAACGTAGTCCGCGAAGAAAAACAA
TTAGCGGTCAAGCCCGACGCACATGAACAGCGACGCCGCCGCCGAAGCAG
CAGCAGTAGCAGCGGTGGGGACAAGAGGATGTTCGCCGCCAACGACGCTG
GCTCAAGGAGAGCGGGACCTGTAGCGGGGTCGAGTGCTGCACCGCTGCTG
GGCAAGGGCGGGGAAGGCGGTCGCAACTCCGGCAGCAGAGAGCGGCAGCT
TTTGGAGCGAAAGCGAGGGATTCTGCTGGAGATGAAGGGGGTCGTAAGCC
GGCAAGCGGAGGCGCTAGACCGACTTGTCCAAAGCAGCACCAACGCTTAC
GTAGCGGGAAATGGGCGAAGGAGAGGTGGTGACCGCAGCAGCAGACAAAG
CCGGTCTTCCCAAGCAAGTGTCTCGACTTCAAGCAGTCTGTTTACCCCCA
AGGGAGCAACGAGTGGCCGAAACACCAGGAGCGGGTCATACCCACATACC
TCCAGCCTTATCAAAAAGTCTTCGGCCATGCTACCCTCTTCTTCGACAGG
ACGAAAAGCGGAGCTACCGATGCCTCCCGCGGTGCCGCCAGACAACGGCA
CGTCTGCCTTTTTGGCCCGCGGGGGACGGTGGGGTGGAGAGAGCCGGCGG
CGGTCGTGGAGGCGCGATTCCGTCATAACAGCATCTTCGGCGTCGTACGC
GACCTATTGCAAACGGGATCGTGTTCAGGATAGGGAGCTCGGTATCAGCC
GACGCCACGCGGCCGTCCCTGCGCTGCCGGTGTAG