mRNA_Ecto-sp13_S_contig10227.252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match: A0A6H5KW87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW87_9PHAE) HSP 1 Score: 263 bits (672), Expect = 7.410e-86 Identity = 142/147 (96.60%), Postives = 142/147 (96.60%), Query Frame = 1 Query: 1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
EQLSDSGVS SKKLAELADVTQEL RTK ALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPP GSSPGDSPWL EETVGSLSGG
Sbjct: 164 EQLSDSGVSQSKKLAELADVTQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPLGSSPGDSPWLGEETVGSLSGG 310
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Match: D8LU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU91_ECTSI) HSP 1 Score: 253 bits (645), Expect = 5.870e-83 Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 1 Query: 1 EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGDSPWLREETVGSLSGG 441
EQLSDSGVS SKKLAELADVTQEL TK ALERAERLVFDQRREADERQ DEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCA FCSCFRGKPAYRRVASPAPFAPPPGSSPGD PWL EETV SLSGG
Sbjct: 85 EQLSDSGVSQSKKLAELADVTQELKLTKAALERAERLVFDQRREADERQRDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCALFCSCFRGKPAYRRVASPAPFAPPPGSSPGDIPWLGEETVASLSGG 231 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10227.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10227.252.1 >prot_Ecto-sp13_S_contig10227.252.1 ID=prot_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp EQLSDSGVSHSKKLAELADVTQELNRTKVALERAERLVFDQRREADERQCback to top mRNA from alignment at Ecto-sp13_S_contig10227:54..1451+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10227:54..1451+ >mRNA_Ecto-sp13_S_contig10227.252.1 ID=mRNA_Ecto-sp13_S_contig10227.252.1|Name=mRNA_Ecto-sp13_S_contig10227.252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10227:54..1451+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |