mRNA_Ecto-sp13_S_contig10226.250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: D8LR67_ECTSI (Uroporphyrinogen-III C-methyltransferase, putative chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR67_ECTSI) HSP 1 Score: 283 bits (724), Expect = 9.310e-93 Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSEKAGDKVPVRRQA 453 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELC DLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFS +AG+KVPVRRQA Sbjct: 252 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCADLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSGEAGEKVPVRRQA 402
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.450e-40 Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAA 330 QV LGTGY +DY PDI DYHP++TAVFLMA+GRL+ELC DL+RR YP TPVAI+E+ASTP QR +K TV+TI+ VA V+APATI+VG+VV VLHG QGL+ D A Sbjct: 434 QVVLGTGYAKDYGTPDISDYHPEQTAVFLMAVGRLKELCADLMRRGYPAATPVAIVESASTPTQRTVKATVETITAVATEHAVRAPATIIVGDVVRVLHGDAQGLIQDVA 543
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A6T5QQD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QQD2_HETAK) HSP 1 Score: 118 bits (295), Expect = 4.560e-29 Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLS 321 Q+ +GTGYGQ+ + I YHP++TAVFLMA+GRL LC DL YP D PVAIIE ASTP QR++ G + +I +A +VK P+ +V G VV+ LHG ++GL++ Sbjct: 220 QLVIGTGYGQNCTKTGITPYHPERTAVFLMAVGRLPTLCADLAAEGYPADCPVAIIEKASTPEQRLVLGKISSIVALAEEHRVKPPSIVVFGAVVAALHGAKEGLVA 326
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S4QY92_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY92_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.660e-28 Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMF 342 QV + TGYG++ PD+ YHP++T VFLMA+GRL LCE L +YP+ PVAI+ENA P QR I G+++ I+ +A KV P+TIVVG+VV VL E G++++ G+ Sbjct: 26 QVVMCTGYGRENTSPDLIQYHPEQTVVFLMAVGRLRTLCERLQSLANYPSTVPVAIVENAGRPFQRTIVGSIENIADIAEAAKVVPPSTIVVGDVVRVLLEDENGIIAEKTNGVM 140
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: B8C0W2_THAPS (TP_methylase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W2_THAPS) HSP 1 Score: 107 bits (268), Expect = 4.180e-26 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294 QV + TGYG++ P++ YH ++T VFLMA+GRL LCE+LV+ + YP +TPV I+E A P QRV+ GT++TI+ +A VK P+TIVVGEVV+VL Sbjct: 135 QVVMCTGYGRNNTSPELIQYHKEQTVVFLMAVGRLRTLCENLVKMAGYPIETPVGIVERAGCPDQRVVVGTMETIADLAEEYDVKPPSTIVVGEVVNVL 233
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S4QY78_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY78_9STRA) HSP 1 Score: 111 bits (277), Expect = 6.920e-26 Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMF 342 QV + TGYG++ PD+ YHP++T VFLMA+GRL LCE L +YP+ PVAI+ENA P QR I G+++ I+ +A KV P+TIVVG+VV VL E G++++ G+ Sbjct: 290 QVVMCTGYGRENTSPDLIQYHPEQTVVFLMAVGRLRTLCERLQSLANYPSTVPVAIVENAGRPFQRTIVGSIENIADIAEAAKVVPPSTIVVGDVVRVLLEDENGIIAEKTNGVM 404
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: K0RL04_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL04_THAOC) HSP 1 Score: 105 bits (262), Expect = 2.720e-25 Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294 QV + TGYG+D PD+ Y ++T VFLMA+GRL LC++L R++ +P DTPVAI+E A P QR + GT+++I+ +A V+ P+TIVVGEVV+VL Sbjct: 104 QVVMCTGYGRDNTSPDLIQYQKEQTVVFLMAVGRLRTLCDNLHRKANFPVDTPVAIVERAGCPDQRTVVGTMESIADIAEANNVRPPSTIVVGEVVNVL 202
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A6U3YBR3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3YBR3_9STRA) HSP 1 Score: 107 bits (268), Expect = 8.350e-25 Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRS-YPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVL 294 QV + TGYG++ PD+ YHP++T VFLMA+GRL +LC+ L+ ++ YP TPV I+E A P QR + GT+++I+ +A V+ P+TIVVGEVV+VL Sbjct: 264 QVVMCTGYGKNNTSPDLIQYHPEQTVVFLMAVGRLRKLCDSLIHQAGYPPQTPVGIVERAGCPEQRTVVGTMESIADLAERFNVRPPSTIVVGEVVNVL 362
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S0HSB0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSB0_9CRYP) HSP 1 Score: 106 bits (265), Expect = 1.410e-24 Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQ 309 +V TG G++ + PD+ YHP++T VFLMA+GRLE L +DL R YP TPV IIE A+TP +R I+GT+ I +A +++ P+ IVVGE V+VL PE+ Sbjct: 239 RVVFCTGMGKEESVPDVPAYHPEQTCVFLMAVGRLEALTDDLTREGYPQSTPVGIIERATTPHERTIRGTISDIVNLAHEEQIRPPSVIVVGEAVNVLCKPEK 341
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Match: A0A7S2LDV1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDV1_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.180e-24 Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 1 Query: 1 QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVR-RSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGM 339 QV + TGYG++ PD+ YH ++T VFLMA+GRL ELC++L +YP DTPVA++E A P QR + G ++TI+ +K P+TIVVGEVV VL G + + +G+ Sbjct: 207 QVVMCTGYGRNGTSPDLIQYHKEQTVVFLMAVGRLRELCDNLCNLANYPRDTPVAVVEKAGCPEQRTVVGDLNTIADYCIRYDIKPPSTIVVGEVVDVLLNEGVGSMEERVQGL 320 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10226.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10226.250.1 >prot_Ecto-sp13_S_contig10226.250.1 ID=prot_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp QVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCEDLVRRSYPTDback to top mRNA from alignment at Ecto-sp13_S_contig10226:134..1019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10226.250.1 ID=mRNA_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:134..1019+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10226:134..1019+ >mRNA_Ecto-sp13_S_contig10226.250.1 ID=mRNA_Ecto-sp13_S_contig10226.250.1|Name=mRNA_Ecto-sp13_S_contig10226.250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10226:134..1019+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |