mRNA_Ecto-sp13_S_contig10223.246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10223.246.1
Unique Name	mRNA_Ecto-sp13_S_contig10223.246.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.770e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2

Query:  650 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIISGGN 868
            RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVE+GTGISREQILSAIISGGN
Sbjct:  136 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIISGGN 208

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-14
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG-PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
            MV RNPNLLA +P G+GGA  AK DT  +SYV+AATRP+G P L  G AF LA P +E  TG+ R+Q LS I
Sbjct:  134 MVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATRPIGKPALALG-AFALATPFIEGVTGVPRDQFLSII 204

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 68.6 bits (166), Expect = 1.270e-9
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAII 856
            MV +NP LLA+ P+G GGA +    TMQ SY++  TRP GP LL+GL F L  P +E  TGI  +  +++ +
Sbjct:  115 MVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIPIKTTITSAL 186

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.620e-8
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 2

Query:  689 GGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQIL 844
            GGA  AK DT  MSYVIA TRPLGPVLL GL   L++PLVE  TGI R ++L
Sbjct:  125 GGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.790e-8
Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGI 826
            MV RNP LLA+ P     AA A   TMQ SY++AATRP GPVLL G+   L +P +E  TGI
Sbjct:  158 MVQRNPGLLAIPPAN---AAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGI 216

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.110e-7
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2

Query:  644 VTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQIL 844
            V RNP L++V PTG+GGA  A  +T+ +SYV+ ATR  G V L  LAF L  PL+E  TG+  RE IL
Sbjct:  124 VLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGVHFREAIL 191

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S4IU94_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU94_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.260e-6
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTG-----FGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQILSAI 853
            ++ RNP LL ++P G     +GGAA A  +T+ +SYVIAATRPLG   L GL   +  P ++  TG+  R+  L A+
Sbjct:  160 LLIRNPGLLGIKPDGWGEEGYGGAATAGPETIALSYVIAATRPLGNFGLVGLLALVLTPGIDAATGLGLRDAFLGAL 236

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 59.3 bits (142), Expect = 3.220e-6
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG---PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
            MV RNP LL+V+P     AA+A   TMQMSYV+  TRP+G   PVL+ GL   LA+P +E   G+ + ++LS++
Sbjct:  153 MVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGL---LAVPALESALGVGKGELLSSL 220

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.110e-6
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3

Query:    3 LGYDGSVFRATFEAFTEVFGEEETKGFV 86
            LGYDGSVFRATFEAF+EVFGEEETKG V
Sbjct:  107 LGYDGSVFRATFEAFSEVFGEEETKGCV 134

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 5.170e-6
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIIS 859
            MV RNP LL V P     A    S TMQ+SY+++ TRPLG   L G+   L IP++E   G+ R +++ ++++
Sbjct:  107 MVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTRPLGNAGLAGIGSLLLIPVIEGTLGLQRGELIGSLLN 176

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10

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POSITION

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Match Name	E-value	Identity	Description
D7FYY7_ECTSI	5.770e-36	98.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S1UHZ5_9STRA	1.280e-14	59.72	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
B7FNV7_PHATC	1.270e-9	45.83	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7R9UE42_9STRA	1.620e-8	65.38	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S2MUE2_9STRA	6.790e-8	54.84	Hypothetical protein (Fragment) n=1 Tax=Helicothec...	[more]
A0A7S2K6C2_9STRA	2.110e-7	52.94	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S4IU94_9STRA	2.260e-6	42.86	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
B5YMT8_THAPS	3.220e-6	47.30	Predicted protein n=1 Tax=Thalassiosira pseudonana...	[more]
A0A6H5KAE4_9PHAE	4.110e-6	92.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
K0RXR5_THAOC	5.170e-6	39.73	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10223:689..4602+
coding sequence from alignment at Ecto-sp13_S_contig10223:689..4602+

protein sequence of mRNA_Ecto-sp13_S_contig10223.246.1

>prot_Ecto-sp13_S_contig10223.246.1 ID=prot_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MINTSILTCVSSFDSLFTSVCYPPSPCPSPVHAVGGATGISCSGNRMVTR
NPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIP
LVEIGTGISREQILSAIISGGN*

mRNA from alignment at Ecto-sp13_S_contig10223:689..4602+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10223.246.1 ID=mRNA_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10223:689..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGGCTACGACGGGTCGGTTTTCCGGGCCACATTCGAGGCCTTCACG
GAGGTGTTCGGGGAGGAAGAGACGAAAGGGTTTGTGTGCCGTAGGTTGCA
TGACGTGAGATACCATACCCCCACCCTTGACCGAGAGCTTCAATGCTCGA
TTTCTCCACAACTAAGAGGATGCCGAGATCAAAGTGATGCGTTTTCGGCA
AGCTTTGAGTCGAGGCGGTTCCAACGCGACATTTTCCGGCGCCGTTGCTA
TTTTTCGCTTGAGGGTAGTCGAGCTTTGAAAAGCGACCCAGGGGGATGAA
GGCTGAACTTGACTGACGGCCCAAAGTATCGTATGCAACCTACGGGATTT
TCTGTTGAAGGTGTCGACAGCCTTGGGACTACTACTGATGTATGGTATCA
TACGTGGTGAAGGATGAACTTGAGTGACGGTGGGGGTTGAATGTGGTTGG
GCTGCTTTTTGTCTGGTAGTCTCATGGTGATGCATTTCAGCGGATTTATG
TCATGATCAATACCTCGATTTTGACCTGTGTTTCTTCTTTTGACTCGCTG
TTCACCTCTGTCTGCTACCCCCCGTCCCCGTGCCCATCCCCTGTACACGC
CGTGGGTGGTGCAACCGGTATCTCTTGCTCGGGAAACAGGATGGTGACTC
GCAACCCCAACCTCCTTGCGGTGAGTCTTATGTATGCCGCCTCCTCAGAC
TGTAGTGTGATTCCTTCGGTTGACGTTGCCGCCACTATACGGGACATACG
TACAATAGAAAACGGGTGCTTTTTCGGATGTGTTTTTGCTTGATGATGTG
CGTGCAGTCTACAGCAGTAGTCAAGAGTTTTTCAAGAGCACTCCTGTGTC
GTTCGGTAGAATCAGCGGGCCCCCTTCGATGTATGATCTGCGCGGGAGGG
CGGAAAGAGGTGGGCAAGAGAAGCATCGATGAAAGGGGGCAGCCTGCCTG
CTTGCGGACTGTGTAGAGGTTAGAAAAAATGGCCGCATGGTGCAGAACTC
ATGTGCAGATCCCCCTTCATCAGGGTACAATCTGCCCACACGACAGTGAT
GTGTCTGCAATAATTCAGATTGCGACTCTGCTTTCTCTGCGGTGTGCTTG
ACTGTTGCGTTGGAGACGATCCCCTCTTTCCACGATGAGCTTCCACCGAT
CAGATTGCGACTCTTGCGCGTTCTGCCGGGTGTGTGCCTGGTTTCTTTAT
TGCAGGTGCGGCCGACCGGTTTCGGCGGCGCGGCTAACGCCAAGTCGGAC
ACGATGCAGATGAGCTACGTCATCGCCGCCACTAGGCAAGTCCTACATGT
GGTCGCCTCGTGGTCCATTTTCTTTTATTCTTGTATGACATCGTGCTTGC
TTGCCCGTAGGCAGGTTGGACTGGTTACAGGGAGAGTGGCGCTCCGTTCT
TGTCTAGCCTCACAGTTTTCCCCGATCTTATGCGGTCGCCCGGTCAATCT
AGTTTGTACCCTCGAAAACTCCTAGTGGTCAGGGTCAGGGCGTTCGAATC
CCGGCGAAAGCGAGCTTTTCTTGCAAACGGAGAGTTTCTCTCGCTTCCGT
TCCTGGCCTGGGTGGAAACCGCTAGTTCGTGTGCACACAGAGGGAAGAGA
ATGCTGCACTCTTCTCGCATTAGCAATTGAAGGCAAAGTACCGCTAGGAG
GGGTGGGTAGGGGGGAACTCCTATGTGTGACCACGGGTTGGCATAAACGG
CACAAGCGCGTGCTGTGAGGGCTGATGTGACGTGAAGACAAGAATATTTA
TATGCGTACCGCTCGCCCTAGAATGGATCGTTGGTGATTTTGCGTATGTT
GACCAACACACGCCTTGTTTTGGAGTTCCCACTACGGTGTGTAGTGAGTC
TTAAAACAGGGTGTGCCACTTTGAACACGTCAAAGCCTCCGCCTCGTCCC
GCGTTGTCTCCTATCTCGTTGCCCCTCTGGAGTCAATTTTTCAATTTCCT
TGTTCTTCACTCCGGACTCAAAACCCTTTAACCACGGCCAGTCGTTTATT
CTGGCTTCAATGTTGATCAACTGCAGACCCCCTCCAATTGTGGAATGGAA
CGCGTTTGTTAATGTAATTATTTTTTGCAGGCCTCTAGGACCCGTCCTCC
TCTTCGGCCTGGCCTTCTGCCTTGCCATTCCCTTGGTGAGTGATGCATGA
AGAAATTAGTGTTTCTGCAGCTGCTCTGCCCTTACTACCTTACGTAAGTA
GCCCAGTATCATTGCCTCCATCCTCTCAACGCTCCGAGTATCGCGGGCAA
TGTGGTGGCTTGTCGTCCTTGTGCGAGGAGCTCGTCCACACGTCCACACC
GCTTTCGTGGTGAGGGTGCTCGCCACTGGTCACGTGGCACAGAGCGGCGT
GGTTTTGCAGTGGGTATGACTCGGCCGTGGGTAGCCGTTGAGCAGCATTA
GCGGCTGCGCCGCGTTGTCTGATATTCAGCGCTGGGTAGAAAAATTCTCT
TGGTGTCGCTTTTCCTCGCCTGCGCCAATGATACGCGACATCACCCACGA
AACTGCCGCAATCTTCTCGGTTTCTTCCCTGTGTTCCGGAATGCTTGGCC
TGAATACTACAACGGACATACTCTAACGCATTTTTCGTTCGTTCAGTTCG
CGACAGATTCGACATCTATAGTGGCAACCTTTGTTTCGCCTCCGTTGGAA
CCCCTGCATACTATTACTCCGTGTTGAAAATGACAATATTCCCCACCTTG
TATGTACGATACATCATGTATCACCGCGCTGACAGGTGGAGATAGGCACC
GGCATTTCGCGGGAGCAGATCCTCTCGGCGATCATCTCCGGCGGCAACTG
ACCTGGCGTGGACCGTCGTACCCGGTGTCTGGGTGTGAAGGAAGACGCTG
ATTTTTTTTGTAGATTGGCCTTAGCAGAACCCAAGACGACACCCCTGTTT
TCGCAGAAAGCCAACAGCAAGGAAATGTGTTATCAGATGTGAATCCGATC
TCGCTATTCTAGGAGTATCGTGTCCTGTTGGGGTACACCGCTGCTGGCTG
TCGTCGAACGATGTCTGCGTGACGCAGTGCTTCCTCTGCGCCTTTTGAGA
TTACACTGCCCAGCGTGTGTTTTGCCGCATGTAGTGCGAGTTTGAGAAAT
TTTGAATTTGATGTTGTCTCTCATTTCCCCATGTACCGATGATACTTGGA
GGACGCCCAAAAACACCCCATGTGGTATTTTTGTGCAATTTATGAGCGTA
CGGGAGTCGCTTGGTTTTCAACAGGCGCCGGTGGTGGAGGGACGACGGGG
GTCAAGGGCGGCGCAGCAGAAGGCAACATACTCGTGTGCATAGGTCCCGT
GTTTGGATACCGTTACGTTGCATCAGTCGTATTTCCATGAGGGGGGGAGG
AGGATAGATGTGACAGCGTCGGCAGCAAGCACCACAAGCAGGCATCAAGG
GCGTATTTCTTTTTGTGGAGACTGTTCTTATTGCGGAGACACTTGTCTCG
ACGTGTGAAATTGGCGGGGATTCGCCCGGACAGTTATCGAGCGCGCTATT
TAGCCAGCACCACCAGGCCATGGAGCGGACTGGAGAACCAATTCTTTGCA
ATCACTCAACATGTGTTCTTCCGCTGACTTTCCGCGTGAGCGACGTGGCC
CCTTTGCGTAGGGCCTAGGCTTGATAGCCATCTGCTGGTTCTGCCAAGGT
CTTCATGGCAATTTTGTGGAAACGTTTTCTCTCCGCATCCTTATATAGAG
TTTTTTTTCGTTTTTTTCTGTTGCTGCGGTGTTCTTTCTTTGGACTCAAT
TGCTCGCCAACAAAGAAGTACCCACCGATGGCCATACCGAACAAAAAAAA
GTAAACTCCGCCAAGGGAAAACGATAAAGGACATGGTGATGAGAGCGTCT
ACACGGAGCACGGATGCTACCACCGCGAATCGGCCGCCACCACTGCAAAC
AACCTCTTCCACCG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10223:689..4602+

>mRNA_Ecto-sp13_S_contig10223.246.1 ID=mRNA_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10223:689..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAATACCTCGATTTTGACCTGTGTTTCTTCTTTTGACTCGCTGTT
CACCTCTGTCTGCTACCCCCCGTCCCCGTGCCCATCCCCTGTACACGCCG
TGGGTGGTGCAACCGGTATCTCTTGCTCGGGAAACAGGATGGTGACTCGC
AACCCCAACCTCCTTGCGGTGCGGCCGACCGGTTTCGGCGGCGCGGCTAA
CGCCAAGTCGGACACGATGCAGATGAGCTACGTCATCGCCGCCACTAGGC
CTCTAGGACCCGTCCTCCTCTTCGGCCTGGCCTTCTGCCTTGCCATTCCC
TTGGTGGAGATAGGCACCGGCATTTCGCGGGAGCAGATCCTCTCGGCGAT
CATCTCCGGCGGCAACTGA