Homology
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
D7G2X4_ECTSI (Proteasome Alpha Subunit family member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X4_ECTSI)
HSP 1 Score: 571 bits (1472), Expect = 4.800e-201
Identity = 304/334 (91.02%), Postives = 313/334 (93.71%), Query Frame = 1
Query: 1 MLLSSVSGARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALKAAATRDGIGNSRQDSTSSGGGDEHRTQDKDYFPGVPQPSVTNAEKKEDDGQGHTTSDAPAHEFVGDREGGEISDDDVDSDNVDVQGPDEDTHRRRGSEAGGKMREPPDESTPRDGEEIGTGFGVVGEMATVELALQALSKAS 1002
MLLSSVSGARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVAC RDLP L VYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARL ALEYKRQYGS MPSRLLALA+ADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTA GRGSAASS+FLEEALKAAA+RDG GNSRQ+STSS GGDEHRT DKDYFPGVP PSV NAEK++DDGQG TTSDAPAHE VGDREG EISDDDVD+DNVDVQGPDE+THR+RGSEAGGKM EP DESTP DG EIGTGFGVVGEM TVELALQALSK S
Sbjct: 1 MLLSSVSGARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACKRDLPDEL-VYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSSMPSRLLALAMADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAVGRGSAASSDFLEEALKAAASRDGRGNSRQESTSSVGGDEHRTPDKDYFPGVPNPSVMNAEKEDDDGQGRTTSDAPAHEIVGDREGDEISDDDVDADNVDVQGPDEETHRKRGSEAGGKMTEPSDESTPGDGGEIGTGFGVVGEMETVELALQALSKRS 333
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A6H5JKK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK2_9PHAE)
HSP 1 Score: 554 bits (1428), Expect = 3.610e-194
Identity = 294/315 (93.33%), Postives = 301/315 (95.56%), Query Frame = 1
Query: 202 LVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALKAAATRDGIGNSRQDSTSSGGGDEHRTQDKDYFPGVPQPSVTNAEKKEDDGQGHTTSDAPAHEFVGDREGGEISDDDVDSDNVDVQGPDEDTHRRRGSEAGGKMREPPDESTPRDGEEIGTGFGVVGEMATVELALQALSKASSGKGAPALTDRNVEIVIASKETGKIRVCSRKEVKGFLGKMTISADCPP 1146
LVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARL ALEYKRQYGSPMPSRLLALA+ADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASS+FLEEALKA ATRDG GNSRQDSTSSGGGDEHRTQDKDYFPGVP+ SVTN EKK DDGQGHTTSDAPAHE VG REG EIS DDVD+DNVDVQGPDE+THRRRGSEAGGKMREPPDESTP DG EIGTGFGVVGEM TVELALQALSKASSGKGAPALTDRNVEIVIASK+TGK+RVCSRKEVKGFLGKMT SADCPP
Sbjct: 27 LVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSDFLEEALKAGATRDGRGNSRQDSTSSGGGDEHRTQDKDYFPGVPKTSVTNVEKKGDDGQGHTTSDAPAHEIVGGREGNEISADDVDADNVDVQGPDEETHRRRGSEAGGKMREPPDESTPVDGGEIGTGFGVVGEMETVELALQALSKASSGKGAPALTDRNVEIVIASKQTGKVRVCSRKEVKGFLGKMTFSADCPP 341
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A212FLT9_DANPL (Proteasome subunit alpha type n=3 Tax=Nymphalidae TaxID=33415 RepID=A0A212FLT9_DANPL)
HSP 1 Score: 153 bits (387), Expect = 1.580e-39
Identity = 83/184 (45.11%), Postives = 116/184 (63.04%), Query Frame = 1
Query: 25 ARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALK 576
ARESS G+D +T+FSPEGRLYQVEY ++A+ G +V + G VVA R +P LL P SVT +FR+TD I TGMT D R QV+RAR A + +YGS +P+ +L +AD +QV TQ+A +RP+ C ++I+ DD TGP +++ +PSG AAG + + +LE+ LK
Sbjct: 2 ARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PASVTHLFRLTDRIGCVMTGMTADSRSQVQRARYEAANWTYKYGSAVPAHVLCRRVADVSQVYTQNAEMRPLGCSMMLIAYDDETGPCVYKTDPSGYYCSYKAVAAGAKATDAGAYLEKKLK 184
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A6J1MNU6_BICAN (Proteasome subunit alpha type n=4 Tax=Satyrini TaxID=127320 RepID=A0A6J1MNU6_BICAN)
HSP 1 Score: 151 bits (382), Expect = 8.240e-39
Identity = 82/184 (44.57%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 25 ARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALK 576
ARESS G+D +T+FSPEGRLYQVEY ++A+ G +V + G VVA R +P LL P SVT +FR+TD I TGMT D R QV+RAR A +K +YG+ +P +L IAD +QV TQ+A +RP+ C ++I+ D+ GP++++ +PSG AAG + ++ +LE+ LK
Sbjct: 2 ARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGADVAVVAAQRKVPDRLLD-PASVTHLFRLTDRIGCVMTGMTADSRSQVQRARYEAANWKYKYGTDIPVHILCRRIADVSQVYTQNAEMRPLGCTMMLIAYDEEQGPSVYKTDPSGYYCSYKAVAAGAKATDANAYLEKKLK 184
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A2D4BD13_PYTIN (Proteasome subunit alpha type n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD13_PYTIN)
HSP 1 Score: 149 bits (376), Expect = 5.320e-38
Identity = 80/184 (43.48%), Postives = 114/184 (61.96%), Query Frame = 1
Query: 43 GYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALKAAATRD 594
GYD +T+FSPEGRLYQ+EY A G +VGV G+ C V T+ L+ PDSVTS+F IT I + TG+ D R QV+R R A +++ +YG +P +LA IAD AQV TQHA++R ++ +ISVDD GP LF+++P+G + T++G + N+LE+ +KA A+ D
Sbjct: 5 GYDRHITIFSPEGRLYQIEYAFNAAKECGLTSVGVRGKDCAVFV-TQKKVQDKLIDPDSVTSVFPITPSIGALVTGLPADARAQVQRLRYEAHDFEHKYGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITFLISVDDEKGPQLFKVDPAGHFWGYKATSSGPKEQEAQNYLEKKIKANASMD 187
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A067BYZ3_SAPPC (Proteasome subunit alpha type n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYZ3_SAPPC)
HSP 1 Score: 148 bits (374), Expect = 1.030e-37
Identity = 80/187 (42.78%), Postives = 119/187 (63.64%), Query Frame = 1
Query: 34 SSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALKAAATRD 594
S GYD +T+FSP+GRLYQ+EY +AV +V V G CVV + +P L + PDSVT+IF+IT I TG+ D + QV+R R A +++ +YG P+P +LA +AD +QV TQHA++R + V+++ISVD+ GP L++I+P+G + TAAG ++N+LE+ +KA A D
Sbjct: 2 SGDGYDRHITIFSPDGRLYQIEYAFKAVKESSLTSVAVRGAKSCVVVTQKKVPDKL-IDPDSVTNIFKITPLIGCLMTGLYADAKAQVQRLRYEAHDFEHKYGYPVPCHVLAKRLADISQVYTQHASMRALGVVTMLISVDEEKGPQLYKIDPAGHFWGYKATAAGVKDQEATNYLEKKIKANAAMD 187
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
B3S0R2_TRIAD (Proteasome subunit alpha type n=2 Tax=Trichoplax TaxID=10227 RepID=B3S0R2_TRIAD)
HSP 1 Score: 148 bits (374), Expect = 1.240e-37
Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 1
Query: 28 RESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALKAAATRD 594
R SS G+D +T+FSPEGRLYQVEY +A+ G ++GV G VV + +P LL P +VT++FR+TD+I A TGMT D R QV+RAR A +K +YG +P +L ++D +QV TQ+A +RP+ C ++IS DD GP L++ +PSG +AG ++NFLE+ LK A D
Sbjct: 6 RGSSAGFDRHITIFSPEGRLYQVEYAFKAINQSGLTSIGVRGTDSAVVVSQKKIPDKLLD-PLTVTNLFRLTDNIGCAMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRLSDISQVYTQNAEMRPLGCGMILISYDDERGPQLYKTDPSGYYCGYRACSAGVKQTEANNFLEKRLKKNAITD 193
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A9VB93_MONBE (Proteasome subunit alpha type n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VB93_MONBE)
HSP 1 Score: 148 bits (373), Expect = 1.590e-37
Identity = 77/184 (41.85%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 25 ARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALK 576
+R +S GYD LT+FSPEGRLYQVEY +A+ ++G+ G+ C VV + +P L+V D+VT +F+IT I TGM D R+QV+RAR A E+K ++G +P LA +AD +Q+NTQ A+LRP+ C +++ +D+ GP LF+ +P+G AAG ++N LE+ +K
Sbjct: 2 SRGTSAGYDRHLTVFSPEGRLYQVEYAFKAINTENVTSIGIRGKDCAVVVTQKKVPDKLIV-ADTVTHMFKITPHIGCVMTGMIADARHQVRRARYEAAEWKYKFGYEIPPDQLAKRVADLSQLNTQEASLRPLGCSMILVGIDEERGPQLFKSDPAGYYVGYKACAAGVKMVEANNLLEKKMK 184
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
UPI0018D0DA5E (proteasome subunit alpha type-6-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0DA5E)
HSP 1 Score: 147 bits (372), Expect = 2.210e-37
Identity = 80/184 (43.48%), Postives = 113/184 (61.41%), Query Frame = 1
Query: 25 ARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALK 576
ARESS G+D +T+FSPEGRLYQVEY ++A+ G +V + G V+A R +P LL P SVT +FR+TD I TGM D R QV+RAR A Y+ +YG +P L +AD +QV TQ+A +RP+ C ++I+ D TGP +++ +PSG AAG + ++ +LE+ LK
Sbjct: 2 ARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVIAAQRKVPDRLLD-PSSVTHLFRLTDHIGCVMTGMIADSRSQVQRARYEAANYQYKYGVEVPVHALCRRVADISQVYTQNAEMRPLGCCMMLIAYDAETGPCVYKTDPSGYYCSYKAVAAGAKATDANAYLEKKLK 184
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Match:
A0A6J2JLR5_BOMMA (Proteasome subunit alpha type n=23 Tax=Ditrysia TaxID=37567 RepID=A0A6J2JLR5_BOMMA)
HSP 1 Score: 147 bits (370), Expect = 4.260e-37
Identity = 81/184 (44.02%), Postives = 113/184 (61.41%), Query Frame = 1
Query: 25 ARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACTRDLPASLLVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLHALEYKRQYGSPMPSRLLALAIADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSNFLEEALK 576
ARESS G+D +T+FSPEGRLYQVEY ++A+ G +V + G VVA R +P LL P SVT +F +TD I TGM D R QV+RAR A ++ +YGS +P +L IAD +QV TQ+A +RP+ C ++I+ DD GP +++ +PSG AAG + + +LE+ LK
Sbjct: 2 ARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLK 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1022.244.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 4.80e-201 / Id = 91.02 Expect = 3.61e-194 / Id = 93.33 Expect = 1.58e-39 / Id = 45.11 Expect = 8.24e-39 / Id = 44.57 Expect = 5.32e-38 / Id = 43.48 Expect = 1.03e-37 / Id = 42.78 Expect = 1.24e-37 / Id = 43.92 Expect = 1.59e-37 / Id = 41.85 Expect = 2.21e-37 / Id = 43.48 Expect = 4.26e-37 / Id = 44.02 Sequence D7G2X4_ECTSI A0A6H5JKK2_9PHAE A0A212FLT9_DANPL A0A6J1MNU6_BICAN A0A2D4BD13_PYTIN A0A067BYZ3_SAPPC B3S0R2_TRIAD A9VB93_MONBE UPI0018D0DA5E A0A6J2JLR5_BOMMA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 580.5 Seed ortholog evalue 5.9e-163 Seed eggNOG ortholog 2880.D7G2X4 Preferred name PSMA6 Model size 1589 KEGG ko ko:K02730 KEGG Pathway ko03050,map03050 KEGG Module M00337,M00340 Hectar predicted targeting category other localisation GOs GO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252 Exons 9 EggNOG free text desc. threonine-type endopeptidase activity EggNOG OGs COG0638@1,KOG0182@2759 Ec32 ortholog description Proteasome Alpha Subunit family member Ec32 ortholog Ec-09_004580.1 EC 3.4.25.1 Cds size 1155 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462516.3809068-CDS-Ecto-sp13_S_contig1022:2948..2992 1681462516.3809068-CDS-Ecto-sp13_S_contig1022:2948..2992 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 2949..2992 + 1681462516.4069893-CDS-Ecto-sp13_S_contig1022:4376..4533 1681462516.4069893-CDS-Ecto-sp13_S_contig1022:4376..4533 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 4377..4533 + 1681462516.4232972-CDS-Ecto-sp13_S_contig1022:5364..5457 1681462516.4232972-CDS-Ecto-sp13_S_contig1022:5364..5457 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 5365..5457 + 1681462516.4366686-CDS-Ecto-sp13_S_contig1022:5939..6038 1681462516.4366686-CDS-Ecto-sp13_S_contig1022:5939..6038 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 5940..6038 + 1681462516.4448586-CDS-Ecto-sp13_S_contig1022:6192..6248 1681462516.4448586-CDS-Ecto-sp13_S_contig1022:6192..6248 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 6193..6248 + 1681462516.4534488-CDS-Ecto-sp13_S_contig1022:6492..6559 1681462516.4534488-CDS-Ecto-sp13_S_contig1022:6492..6559 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 6493..6559 + 1681462516.463185-CDS-Ecto-sp13_S_contig1022:7002..7482 1681462516.463185-CDS-Ecto-sp13_S_contig1022:7002..7482 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 7003..7482 + 1681462516.4727988-CDS-Ecto-sp13_S_contig1022:9106..9180 1681462516.4727988-CDS-Ecto-sp13_S_contig1022:9106..9180 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 9107..9180 + 1681462516.4820752-CDS-Ecto-sp13_S_contig1022:10146..10231 1681462516.4820752-CDS-Ecto-sp13_S_contig1022:10146..10231 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1022 10147..10231 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462516.4945292-UTR-Ecto-sp13_S_contig1022:10231..10665 1681462516.4945292-UTR-Ecto-sp13_S_contig1022:10231..10665 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig1022 10232..10665 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1022.244.1
>prot_Ecto-sp13_S_contig1022.244.1 ID=prot_Ecto-sp13_S_contig1022.244.1|Name=mRNA_Ecto-sp13_S_contig1022.244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=385bp
MLLSSVSGARESSKGYDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVH back to top mRNA from alignment at Ecto-sp13_S_contig1022:2949..10665+
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1022.244.1 ID=mRNA_Ecto-sp13_S_contig1022.244.1|Name=mRNA_Ecto-sp13_S_contig1022.244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1022:2949..10665+ (Ectocarpus species13 EcNAP12_S_4_19m)ATGCTGTTGAGCTCGGTGTCAGGAGCGAGAGAGTCTAGCAAAGG GTGAGC
AATGCATTACCTACATGCAGAACAGCCGAACGGCAGTCTCGTCTTGTCCT
CCCACTTCGCAGCCTATGTTGATGTCGATACATGTGGGCACGAGGTGCTG
TAGACAGCTTGGTACATTTCCGCAACATGATACGCTACATGGCGTTTGCT
GCGGTTGAATGAGAAGCATGTGTGCATCTTCTCATCCGGACAGGGGCTCG
TCCCCCATCGGCGGCTTTTGGGAAACAGCCTCCACACGGCCACAGCAGCG
TGCAATCCTGGCGCCACGCGTGCTCGACGTGTTCACGTGTCAAAGTGCGT
GCGGTGCTGTGACTGTGAGGGGTGAGCAATGACCAATTTCGCCCTACCAG
CAGGGCCAGTGCGACATCATGTACTACGCCCCAGTGTCTGTCTGCTGTCA
ACAAGCTCTGTGTCGCATCCCCGTGCGGCGATGATTGCGCTGGCTCTTTG
TCTCTTCTGCGCTGCTATAATCCCCCTGTGTCTTGCCACGTATACTATTT
TACACCACACTTGTGGCCGCGAGGCCGATTTTCTCTGGGTTACGAACGCT
ACGGACTTAAAGTGCGCGCGGGGGATCGCAGTGTATCCTCTTCAAAAATC
CAGGAAACACCTGCACATGTCAGGTTTCCAAGCCCGAACTCTAGTACGAA
ACTACCATCGCCAATCAACCTTCCGCGGTCGCTTGTGCATCATGTTATTT
TCGGGATCGTAGCCCTTGTGATACACGGCAGGCTAAGTAGCGGTCCACGA
TATTCCAATCTATCTTTCTGTCATCGAGATCGGTAACCTACAAGCATGGT
TTCTTAAGCTGCTGTGCGGTCCGATGTTGAAGCGCTTCAAGCATGCAGTA
GCGGTGAATCAACAACTTTATGAGTGTGTGGGGCCGCGAACTTCTGCGCA
GCTCTTCCCTGACATGTCCTACTCGTCGCCATGGTCGATTTGAATGCCTG
GGGTCATGCGTATGTAGGTCTAGCCACAAGTAAAGGTGCTTGAAGCGTTT
CAAAATCGGACCGCACGGCAGCTGCAAAAATCCTCGTTGTAGCTGACCGA
TCTCGATGATTGAAAGATCGTTTGGAACATCGCGGACCGCCAGTCTGCCG
CGTTTCACAAGGGCCCGATCCCAGAAACTAACATTGTACACTAGCGACCG
CGGCGGACAGTAAATTTTGCGATGGTAGACTTTGGAACACTGAGATATGC
AGGCGTTCCTCCTGGATTTTTGAAGAGGAGACACTGCGATCCCCCCCGCG
TCCTCAAGCTGATTGCCAATGACTGCAGGTCGCTCAAGTATCCTTCGCGT
GTCTGCCTGGAACCTTTTTTTTACGTGGTCGAGCTCCTGATCGCTTCGGG
CGCCTCCTATCTTGCACTCTCGCTCCAGGTACGATGCAGATCTGACGCTG
TTCTCGCCAGAGGGCAGGCTCTACCAAGTGGAGTACGTCATGCGCGCTGT
GGGACACTACGGCTGTCCAGCGGTCGGGGTGCACGGGGAAGGTTGCTGCG
TCGTTGCGTGCACGCGAGATTTGCCGGCAAGTCTT GTGTGACACCAAGCG
TATTAATAACATTGTTGATTGGACTTTATTGCTGGTTTCCTTTTTAAACG
CGATGGTGAGTGAGGTTACACGATGACTCGGCGGTCGGAGTATGCGAAAG
GAGTGAGCAGGTATCATGAAGCGCGGTATTATGCCTTTCTGCGTGAAGCT
GGATAGACCTTTCTTGCCATGGAAACCAAGGCAAGTATTCATACCGCTGA
AGGAAAACGGAACAATTAGGGTAACTCCTGCACGGCCTTCCCCCTAGAGG
CCTCATACGTTCGGAAAACCTACCGAAGGTGTAATATACATTCGGAAGGC
AAATGACAACACGCAGAGCGAAGAGTAACTTTTGTAGTGGTCTGACAAAT
GGCTGTTGTACGAGAAAGCTGTGCAAACAGTTGTCCGCGGGCAACTGCAG
GCCGAAACAGCTGAGCAAAAGATTGGTAATAAGGTTGAACAAGCCTGTGG
TCCCCCCGTTACGCCTATATATTTACCCTCATGACCTCGTTGACATGACA
CGTGTCTCTTCCATACTGTCCAACCGAAATGGGAGGACTTTGGTGGCAAC
GGATTCAACCGGATAGAGGGCACCTACCCAACATTTGGTAGTACACATGC
ATGGCGAGCAAAAGAGGTGTCGTACCACTGGTCTACGCGACGTTGAATTT
GGGAGTTACCACGGTGCCAGGCGGGCTGAACATTTTGCCTGCGAGTTAAG
GCTCAACTTCCATTGCCTCATGAAAGTAGGAGGAATCCTATCTCTATTGG
CCCACATCTCGTGCGTTGTCACAAATGTTCGCGCGCGTTTGCTGCTTCAT
TTTTGAGCAGGATGAGCTGGTATACCCCGATTCTGTAACCAGCATCTTTC
GGATAACTGACGACATCTACAGTGCAGCCACTGGAATGACCGGCGACGTT
CGGTATCAG GTGAATATCGTCTAGCCGTCGCCGCCTGCTCCTAGAACGCG
GCAATGACACGTTGCGAGTGAGTAGACGAAACCGTAACAAGCCGCCGAAG
GACGATCGTTGTTGGGGTGTTCAGCACAGATTGAGTGAGAACCCGGCATG
TACGTCATGCCGTACATGTTTCAAGAAGAAAATCCCCCTGTGCAAAACCT
TGCCAGAAAACGCGTTTGTGTCTACTTATGTTTTGGTGCTTTACTCGAAG
GAATCCGATGTCGAGGAACAAACAACGTGGCCCCATGAATGCCTAGGCTC
TTGTCTGTCGAGCGTTCTTTCATCCCCTTTGTTTGTCTTTGCTGGTCGAG
AGTTGAAGAACACTCGCCAAATCCGATGGAGAAAACCGCTTGCGTGCACC
AAAGCCCATTTTGTAAAGCGGGCGTGGCATATGATCGAAATGTTCATTGT
TGCAGGTCCGACACGCACGCATAACCGTATCGTGCCGGCAGGTGAAGCGG
GCGCGGCTTCATGCACTAGAATACAAGAGGCAATACGGCAGTCCTATGCC
GTCGCGGTTGCTTGCTCTCGCGATAGCCGACGCCGCCCAG GTTAGTTAGA
CGGGACTCAAGGGTTCGGTTTTAATCCTGCCGCGAAGTAACTCGTGTGTT
TGTACCTGTCTTGATGGAAGTGACGCGCACTTGACACAAGCTATGGCAAC
CTTCTTTAACCGTTACGCCCTTGAACGACCTGGACGGTCCGCAGGTGAAC
ACTCAGCACGCGGCTTTAAGGCCGATGGCTTGTGTCTCCTTGATTATCAG
GTACCTGCCCTACTCCGACACCATATGTCACTGAGCTTGGTTTCTGTTGT
CGAGAATGATTTCGACCGAAGTCGCTCCCAGGATAACCCTCCTGTGCTGA
TTCGTCCGCGTCGGCAACCCTTTGAAACAGCTCGCCCGTTCACGTCATCT
ATAGGCGTCTGGTCATGCAGTCGCCCCACGCCTCTCGAGCAATAGAGACC
TGAGCCATTGATTGTGCGTTACCTGCGTTTGCTATACGTTGCAGCGTGGA
TGATCCGACCGGACCCGCTCTGTTTCGGATAGAACCTTCTGGGCAGGTGT
TCCAAGCATGG GTGAGGCGTTTGTGTTGCGATGCTTGCCTCTCGTTCGTC
ATGCCAAAGGAAGCTGTGTCGTGCATGGGCAGATCATCGGTATGAACTTC
CTAGGGGAGCTGCCAGATCGTTTCTTCGTTGTTGCCTGCCTGAACTGAAT
ATAGCGTGGCCGATGGGGGCGAAGTGTCTATGCAGACCTTCGGCGGTTCT
TGATGTTGCTGTTCAGACACGCTTGATCTCTCTGAACCGAGCCCGGGCTG
AGTCCTCCCAAAATCGCTCTGAGGGTTTCATCATCATGATAGGAGCGCCG
ACGCTGCCGCAGTTAGCGCCCGGTCTTGGTAGCCATTCTGTCACGGCATC
ATCACATGACAGCCTTTCTTTCCCCCCAAGAGTAAACCGGGCTCGTGTAG
CTGCGTTGTTGGCGATTCTCACCCTCGCGAGCATGCGGTGCTATGCCCAC
GCAGGGCACCGCTGCAGGCCGCGGCAGCGCAGCCTCCTCGAATTTCTTAG
AGGAGGCCCTGAAAGCAGCGGCAACCAGGGACGGGATAGGGAACAGCAGA
CAAGACTCCACATCGTCAGGGGGGGGCGACGAGCACCGCACTCAAGACAA
AGATTATTTTCCAGGTGTCCCTCAACCGTCAGTAACGAATGCTGAGAAGA
AAGAAGATGATGGCCAAGGCCATACGACAAGCGATGCACCCGCTCATGAA
TTCGTCGGGGATCGTGAAGGGGGTGAAATTTCCGATGACGATGTTGACTC
CGACAATGTTGACGTCCAAGGGCCAGATGAAGACACTCACAGGAGGCGAG
GGAGTGAGGCAGGGGGGAAGATGAGAGAGCCCCCAGATGAAAGTACCCCG
AGGGACGGCGAGGAGATTGGGACCGGGTTCGGGGTGGTGGGGGAGATGGC
GACAGTGGAGCTGGCGTTACAAGCTTTGTCCAAG GTGGGGTTTCAATGTG
TCTGTGCATGTTTGCTTAACGTCGAGCCGAGCATCGATGGCTTCCTTCAT
CTTGACAATTGTAAGCATGTGTCCCCCATGCGCACAACGAAGGAGCCCGT
GATCACGGTGACACCCGGGAGTTGCGACGGAGAATCGCCCTCTTTTCGTC
GTCCAGTTATGTAGCACCCGATCCCGGCAGGATAAAAAACAGCGACGCTC
CGTTGAGGAAAGGCTGTCTGAGACTAGGGGCGATAAGGAGCAGAGGCGTC
CCTAAAGGGATCCAGGTTAACACTCGGGGATATAGTCTGTGCCATGGGAT
GTGGATACCCTGGGACCATGGAGCTATCGGCGTAAAAACTATCTCGAGTG
TTTGAACTCCCCATGGTGCTAGGCGAAAGTTACGATGTGGTTGCTGAACT
ACGGTTGTTTCGAATTTTTGCGTCACGGAATGAAAGTAGAACCTTGCTCG
TTGCATATTCACATTCTGGCTGCCCCAGGAGTAAGACGCGGGTGCGACTA
AGGGCAAAGCAACGACCTGGCATTCACCAGTGCGGTTTCGCGCTCATAAA
ATAATCTCGCACGTATGGTACATCGCGAACACTAGATTTTCAACTTCCGT
TTCACTCCAACTAGCACTGCATCGTTTGACACAATGGTTTTCGAGTATCA
GTAGAGTTCAAAATGACGACGTCTAAGCGACTTCGTGTAATATCTCCACA
TCACCCTAATTCCCCGTTTCCATGACAACCCCCCACTGCGAACAAACCCC
TACGAGTGCAACACGAAAATGTTAACAGCAAGGGGCGGTGTTTTCTTGCG
CCCCCCCTACCTCTGAGGTTTGCCATCGGGGCTGGGTTTTCGTCGCTTGG
CAGCGATGTTGTAAAACAAACCCATCACTTCGTGAGCTTGGCAACCAGGT
TACCGCCTTTTTTTTGCCCCTGTTTCTTCTTCTTTTGCGGTACCCATGAA
TGGTGTTCGAGTAGATTATGTCGCGCGGGGTCGAGAATCCTCACCCGCGC
AAAGGGGATAATCGCGCCACGTTGTGCTGAGTTGGTCAAGCACCCTCGGG
GTAGTTATAGAGTGCTTACAGCTGTCCCTGGAATCAAAAACACTAGCAAA
CATATTAGGTGCACTAGAAAGTAAATTAAGTAATTTGCAGCTGCCATCCG
TACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTACCAGGATGCAGG
GCACCCTTCGCGCGACTCGCCGAATACCTCACAGCGTTTCGCGCTCGTTG
ATGTGAGAGCCTGGTCTGGTGAAAACCCGGCGTGCTCCGTCCCGGCTTTG
TTGGGATGCGAGGACAAGGGTCTAACGACTACAGCATGCACGACTATGAG
TGCGCCCTACCCCCTTACCTCCGAGGTTGCTCTGTGGAAATGTTTTTCAC
CAAGCTGGTAGTTGCCCCTCGGCTTGGTCATAGGATTTCAAGGCGTTTAT
TCCGGCAAGGTTTGTTGTTGGTGTGATGATTGTGGTCGGTGGTTTGTTGG
TGTTTAAACATCAAAAACGGTCTCATCAACTTAGTAATGGAGACAGACCT
TGGTATTCGTACTGGTACTGACGCGAACAACGTGTTTTCGCTCCCACCTC
GGCCGCAGGCGTCGTCTGGGAAAGGAGCCCCCGCTCTCACGGACAGAAAC
GTGGAGATTGTCATCGCTTCCAAGGAGACTGG GTAAGCGCTGGTGGCAAG
GTTTCGTTTTTTTCCATGTGTACCAACGTCAGGACGTGGAACATGTCGTG
TAGAAGACAGACCATTTTTTTTTTTTGTATACACAGATAATTTGCGCTCG
ACTCCTTCCTTGTGCGTTTCTCATTCTATGCCTTGCAGAATAATTTGTAA
CCACCGCCCGAGAATGAATCATGATGCTTGCAACGATTCTTCATTCCTGA
TCAAGCGTGCTTGTCGTGGATTCATAATGGTTCGCGTTTCTATGGCACTT
CCTCGAATTTCTCACGCCCATCAACCATCAACTGCCGCTAATGGGACACC
ATGTACCCAGCTGGCTTGACACCAATGTCGTAATTGATCCGATTGCTCCA
GCATGGGGAGCTTTGTTCAATCGCGCTTGCAGGGGGTGGCGTACTTCTGC
ATCGAGCATGACAACCTCCCTCTGCTGGCAATCGAAATGAAAATATCGTT
CCCAGAGGCAGGCACGCGTGACTGGGATCATTTGCTTCACTTCTCGCTTA
TTTGGAGTAACACTGGATAGTCATGCCTCACGCCCGACTATCGCTTGCCG
ACCAGTCATTTCTTCTGCTCATGGGTCTCGCCACGAGTGGCTCAGCATTG
TAAGCTTGATTCGGACGCGAAATGAATAGTTTGTGGTGCTGGACTCCTCA
TTCGCCTCTATGCCGTGGACAGTTCCTCACGTGTTTTGCGGCTTGCAAAA
GTCTGGGCTGGTTGTAAAACCTTTATCCAACACCTGAGCAATCACACGCA
ACCGCCGTAGGTTACTGTTTAGTTTTTGTCGCGACGACTCCGGAAAAAAA
TGCGGACAGACGTATCTCCGACGTTTGCAATATTGACCGGGAGCCACGCC
AACGTCCTCCCGCATCTATTCAAACTCCCGTTGGCGTGCCCACTTCGTTC
GCGCGCATTTTGTCTCTGCCCTTGAACCAATTAATGTTCGGCAAGCAGCA
AGATTCGAGTTTGCTCGCGGAAGGAGGTCAAGGGCTTTCTCGGCAAGATG
ACAATTTCTGCGGACTGCCCGCCCAAATTATGA CTTAGACCTTCGCCGAG
AATTCTACTGTTCTCGACACCCCGCACTCTTCTTTGTTGAAGAGGTACAA
ACTTGGGTTTGAAATTGCTCTCTCTCTCTTTCGAAGATTTTCGCACCGAG
CGTCATGTGTATACTGCCTTCTAAGGCTCTTCCGCTAGGGAGTTGGTGAT
GCGTGATGTGTTACTGCTGTTGGCGGGAAGGACATCGTTTTTTTGCGCAC
ATTCTGGCATGACAGGTGCCACCACGTCGGAGCGCACGGCCGGTAAAAGA
ATGCATGTGCCCATATTTGCGGCATTGGAGAGTTCTCTTCGAGCGCTGTC
CGGGAATGCGTCGTTCGGTGGGATCGCCTTCTTAGTGACAGAGAAGTCAG
CTTTTGAAGGGTGGTGTCTGGGTGTGTGTGGGGGGTAACTCAAGTAGTTT
CGCAACTACCCCCTGTT back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1022:2949..10665+
>mRNA_Ecto-sp13_S_contig1022.244.1 ID=mRNA_Ecto-sp13_S_contig1022.244.1|Name=mRNA_Ecto-sp13_S_contig1022.244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1022:2949..10665+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top