mRNA_Ecto-sp13_S_contig10211.237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: D7G6U6_ECTSI (Cytosine-C5 specific DNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 3.400e-52 Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 3 Query: 537 LLPLSGYLDPSMYGEAAVPLLLSPEACSHANPSLRFDVVTLQSTETTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD 836
L PLS YLDPS+YGEAAVPLLLSP+ACSHANPSLRFDVVTLQSTETTTFTKGYRKHA RAGPVVLLTDDGERRVSGEKLGRFPS LDLGPE KEVRWFSD
Sbjct: 245 LRPLSKYLDPSLYGEAAVPLLLSPKACSHANPSLRFDVVTLQSTETTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLGPEGKEVRWFSD 344
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: A0A6H5KAF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF5_9PHAE) HSP 1 Score: 168 bits (426), Expect = 3.690e-46 Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 561 DPSMYGEAAVPLLLSPEACSHANPSLRFDVVTLQSTETTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD 836
DPS+ GEAAVPLLLSP+ACSHANPSLRFDVVTLQST+TTTFTKGYRKHA RAGPVVLLTDDGERRVSGEKLGRFPS LDL E KEVRWFSD
Sbjct: 76 DPSLCGEAAVPLLLSPKACSHANPSLRFDVVTLQSTKTTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLKTEGKEVRWFSD 167
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: D7G6U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U4_ECTSI) HSP 1 Score: 104 bits (259), Expect = 9.280e-24 Identity = 57/84 (67.86%), Postives = 61/84 (72.62%), Query Frame = 3 Query: 672 TTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD--IGRCPGCTGSLKLLISRRPVPHVLSVV 917
TTTFTKGYRKHA RAGPVVLLTDDGERRVS E+LG FPS LDLGPE KEVRWFSD + R G + RP PHV V+
Sbjct: 11 TTTFTKGYRKHAGRAGPVVLLTDDGERRVSEEELGPFPSGLDLGPEGKEVRWFSDREMLRLHGFPEAFDF----RPSPHVSVVL 90
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: A0A6H5KE46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE46_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.390e-10 Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 Query: 424 VNHSRLRYYCLARRRNADCKGEATDIKESLPQDMAAVP 537
+ +SRLRYYCLARRRNAD K EATD+KESLPQDMAAVP
Sbjct: 116 IPNSRLRYYCLARRRNADGKREATDVKESLPQDMAAVP 153 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10211.237.1 >prot_Ecto-sp13_S_contig10211.237.1 ID=prot_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp QTPRGGLVFQRRCQATKTQSRRQTPRGGLVLQRRYQATKTQPRWQTPGRSback to top mRNA from alignment at Ecto-sp13_S_contig10211:4044..5711- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10211.237.1 ID=mRNA_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4044..5711- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:4044..5711- >mRNA_Ecto-sp13_S_contig10211.237.1 ID=mRNA_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4044..5711- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |