mRNA_Ecto-sp13_S_contig10211.236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: D7G6U5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U5_ECTSI) HSP 1 Score: 516 bits (1329), Expect = 1.240e-178 Identity = 274/311 (88.10%), Postives = 286/311 (91.96%), Query Frame = 1 Query: 10 FVRRSRLHLTFAGRYDEMRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDDTTPDRAV 942 FV S L GRYDEMR+V+QRMTNAPVHLPSGLV HSSTRRPGPSFASAWQSWRRSLGG YQSASG APDQITETS++INNP+DE+ RGSESS T+D+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIFLVE+VGRKPLLSASMVLAA AASVFALGSGSGAGVVISGACLFNAFS CGW+AL VVSTEAFPTA RVSGMGLVSAAG LGSIGAQFANGSLEGNVFLLL VTSG+TLVGGLASLLLP ETLGVSLD TTPDRAV Sbjct: 302 FVPESPRFLAREGRYDEMRIVMQRMTNAPVHLPSGLVQHSSTRRPGPSFASAWQSWRRSLGGGLYQSASGIAPDQITETSSMINNPEDELTRGSESSGTKDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAGVVISGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASLLLPGETLGVSLDGTTPDRAV 612
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A6H5K971_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K971_9PHAE) HSP 1 Score: 422 bits (1085), Expect = 7.830e-147 Identity = 231/276 (83.70%), Postives = 239/276 (86.59%), Query Frame = 1 Query: 61 MRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLL 888 MR VLQRMTNAPVHLPSG V H STRRPG SFA APDQITETSA+INNP+DEIGRGSESSSTQD+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYG+YGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIF VERVGRKPLLS SMVLAA A SVFALGSGSGAGVV+SGACLFNAFS CGW+AL VVSTEAFPTA RVSGMGLVSAAG LGSIGAQFANGSLEGNVFLLLVVTSG+TLVGGLASLLL Sbjct: 1 MRAVLQRMTNAPVHLPSGFVQHRSTRRPGLSFARI-------------------APDQITETSAMINNPEDEIGRGSESSSTQDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERVGRKPLLSVSMVLAAVAPSVFALGSGSGAGVVVSGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLVVTSGLTLVGGLASLLL 257
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: D7G6U3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U3_ECTSI) HSP 1 Score: 391 bits (1005), Expect = 3.860e-135 Identity = 208/231 (90.04%), Postives = 218/231 (94.37%), Query Frame = 1 Query: 253 IINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDDTTPDRAVP 945 +INNP+DEIGRGSESSSTQD+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYGT+GVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIFLVE+VGRKPLLSASMVLAA AASVFALGSGSGA VV+SG CLFNAF CGW+AL+VVSTEAFPTA RVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLL VTSG+TLVGGLAS LLP ETLGVSLD TTPDRAVP Sbjct: 1 MINNPEDEIGRGSESSSTQDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTFGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAAVVVSG-CLFNAFITCGWNALDVVSTEAFPTAARVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASFLLPGETLGVSLDGTTPDRAVP 230
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A6H5K925_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K925_9PHAE) HSP 1 Score: 274 bits (700), Expect = 3.540e-89 Identity = 140/164 (85.37%), Postives = 146/164 (89.02%), Query Frame = 1 Query: 61 MRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERV 552 MR VLQRMTNAPVHLPSG V H ST RPG SFAS QSWR SLGG YQSA G APDQITE SA+INNP+DEIGRGSESSST+D+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYG+YGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIF VERV Sbjct: 1 MRAVLQRMTNAPVHLPSGFVQHRSTTRPGLSFASVPQSWRCSLGGGLYQSAPGIAPDQITEISAMINNPEDEIGRGSESSSTKDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERV 164
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A835YPW8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW8_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.250e-53 Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = 1 Query: 358 PRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDD 921 P R VL+ WF LSYG+YG++TWN +FADIGL NP+ SF+Y+L +LPGNV SI VERVGR+ +L SM AA AA++FALG+ GA +V+ A FNA S GW+ L+ +S E+FPT R SGMGLV+A G GS+ AQ NG LE +V LLL+VTSG+ L G A+ LLPRET G +L + Sbjct: 374 PPTARTTYVLMATWFALSYGSYGISTWNATLFADIGLGNPFASSFVYALGNLPGNVVSILYVERVGRRRMLCVSMAGAAAAAALFALGTRGGAALVVGAATTFNALSVAGWNCLDCLSAESFPTGVRASGMGLVAACGRAGSVAAQLVNGRLERDVPLLLLVTSGLMLAGAGAAALLPRETAGRALQE 561
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A7S3HJH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJH3_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.400e-51 Identity = 95/186 (51.08%), Postives = 138/186 (74.19%), Query Frame = 1 Query: 364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDD 921 L R +++L+V+WFTLS+G+YG++TW + +FAD+G+ NPY +F+++L++LPGN+ S+ +E+ GR+ LLSA M LA +A FAL + A VV+ A LFNAFS GW++L+ +S E FPT R S MG+++A G LG++ AQF NGSLE N+ LLL VTS T+VGGLA+ LLP++T G ++ D Sbjct: 266 LLRTSLILLVIWFTLSFGSYGLSTWISTLFADVGIGNPYAAAFIFALANLPGNIVSLLYIEKYGRRVLLSAGMCLAGASALGFALNTAD-AFVVVLCAALFNAFSVIGWNSLDCLSVECFPTHVRTSAMGVLAAGGRLGAMSAQFVNGSLEQNIPLLLFVTSACTVVGGLAAWLLPKDTAGRAMSD 450
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A4D9D2N9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2N9_9STRA) HSP 1 Score: 173 bits (438), Expect = 2.940e-46 Identity = 93/185 (50.27%), Postives = 128/185 (69.19%), Query Frame = 1 Query: 364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLD 918 L+ + L+VVWFTL +GTYG++TW + +F IG+ N +L +FL++L++LPGN+AS L+ER+GRK LL+ SM+LAAG+A VFA S + + AC F AFS GW+AL+ +STE+FPTA R +GMGL+S G S+ A F +GSLE +V LL VT T++G L + LP E G SLD Sbjct: 313 LRLTTLRLMVVWFTLCFGTYGLSTWISTIFKVIGIKNEFLPTFLFALANLPGNIASFVLIERLGRKRLLAFSMLLAAGSAFVFAFTSTRATWLAVVAACCFQAFSVAGWNALDALSTESFPTAMRTTGMGLLSGTGRFSSLIAMFVDGSLEHSVALLFTVTGTTTVLGALTAFWLPYEPTGQSLD 497
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A482T2B5_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2B5_9ARCH) HSP 1 Score: 159 bits (402), Expect = 2.940e-41 Identity = 85/181 (46.96%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLG 906 L+ +IV + VWFTLS+G+YG++TW + +F D+G+ NP+ +F+++L++LPGNV S++L++ GR+ LLS M LA ++ FAL + A VV+ A LFNAFS GW++L+ +S E FPT R + MGL++A+G LG+I QF NGSLE N+ LLL VT+ L GG + LP ++ G Sbjct: 280 LKFTSIVFMGVWFTLSFGSYGISTWISVLFEDVGIGNPFAAAFIFALANLPGNVISLWLIDTYGRRLLLSWGMALAGLSSLGFALDT-KDAAVVVLFAALFNAFSTMGWNSLDCLSAEMFPTRARSTAMGLLAASGRLGAISGQFVNGSLENNIPLLLFVTTACCLFGGCIAFALPHDSAG 459
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: W2QKP3_PHYPN (MFS domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2QKP3_PHYPN) HSP 1 Score: 153 bits (387), Expect = 3.890e-39 Identity = 97/242 (40.08%), Postives = 150/242 (61.98%), Query Frame = 1 Query: 205 QSASGSAPDQITETSAII---NNPKDEIGR-----GSESSSTQDERDG-GVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALG--SGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEG---NVFLLLVVTSGVTLVGGLASLLL 888 ++ +G A D +TE+S+++ N E+ G Q ER IL DP L+ I L++ WF LS+G+YG+ATW +F IGL NP+ +F+Y+ ++LPGN+ + L++R+G + +L+ SM+L+AG A+ FA S SGA ++ A FNAFS GW+A++++S E+FPT R +GMG +SAAG GS+ AQF NG L G +V LLL +T+ + L+G ++S+L+ Sbjct: 237 KTTNGDAADHVTESSSLLSQHNTDASEVNGYTVVFGPSDPGIQTERSSLSAYGILF---DPVLRGTTISLLMSWFCLSFGSYGLATWITMLFKRIGLENPFANAFIYAAANLPGNIMTALLMDRLGGRRILAISMLLSAGCATGFAYANSSASGAATIVLLASGFNAFSTAGWNAIDLMSAESFPTDVRTTGMGTLSAAGRAGSVAAQFVNGYLIGPPVHVTLLLAITASMMLLGTISSVLV 475
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A225WUC3_9STRA (Synaptic vesicle glycoprotein 2A n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUC3_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.310e-38 Identity = 81/183 (44.26%), Postives = 129/183 (70.49%), Query Frame = 1 Query: 355 DPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGV--VISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEG---NVFLLLVVTSGVTLVGGLASLLL 888 DP L+ I L++ WF LS+G+YG+ATW +F IGL NP+ +F+Y+ ++LPGN+ + L++R+G + +L+ SM+L+AG A+ FA + S +GV ++ A +NAFS GW+A++++S E+FPT R +GMG++SA G GS+ AQF NG L G +V LLLV+T+ + L+G ++S+L+ Sbjct: 279 DPVLRATTISLLMSWFCLSFGSYGLATWITMLFMRIGLENPFANAFIYAAANLPGNIMTALLLDRLGGRRILAISMLLSAGCATGFAYANSSASGVASIVLLASGYNAFSTAGWNAIDLMSAESFPTDIRTTGMGMLSAVGRAGSVAAQFVNGYLIGPPVHVTLLLVITASMMLIGSISSVLV 461 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10211.236.1 >prot_Ecto-sp13_S_contig10211.236.1 ID=prot_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp ERTFVRRSRLHLTFAGRYDEMRVVLQRMTNAPVHLPSGLVPHSSTRRPGPback to top mRNA from alignment at Ecto-sp13_S_contig10211:2586..3871+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10211.236.1 ID=mRNA_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1286bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:2586..3871+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:2586..3871+ >mRNA_Ecto-sp13_S_contig10211.236.1 ID=mRNA_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:2586..3871+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |