mRNA_Ecto-sp13_S_contig10211.235.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10211.235.1
Unique Name	mRNA_Ecto-sp13_S_contig10211.235.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10211.235.1 vs. uniprot
Match: D7G6U5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.670e-14
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 3

Query:    3 RRKMQRNGWSCAPGLLATVDHSASIVAAEELFCVENGPGFE*FVRALAAAV 155
            RRKM R G +CAP LLATVDHSASIV AEELF VENGPG E F+RALA  V
Sbjct:  151 RRKMHRIGSTCAPDLLATVDHSASIVVAEELFSVENGPGLEQFLRALAEPV 201

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10211.235.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10211.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G6U5_ECTSI	1.670e-14	76.47	MFS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10211	contig	Ecto-sp13_S_contig10211:411..660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	62.4
Seed ortholog evalue	5.4e-08
Seed eggNOG ortholog	2880.D7G6U5
Preferred name	SV2A
Model size	250
KEGG ko	ko:K06258
KEGG TC	2.A.1.22
KEGG Pathway	ko04512,map04512
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006873,GO:0006874,GO:0006875,GO:0007154,GO:0007267,GO:0007268,GO:0008021,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0014052,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030003,GO:0030054,GO:0030133,GO:0030285,GO:0030424,GO:0030425,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031594,GO:0031982,GO:0032879,GO:0032890,GO:0033267,GO:0036477,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043679,GO:0044070,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0048786,GO:0048878,GO:0050789,GO:0050801,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051588,GO:0051952,GO:0051955,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070382,GO:0071944,GO:0072503,GO:0072507,GO:0097447,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098771,GO:0098793,GO:0098805,GO:0098916,GO:0099501,GO:0099503,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0150034
Exons	1
EggNOG free text desc.	solute carrier family 22
EggNOG OGs	KOG0255@1,KOG0255@2759
Cds size	117
COG Functional cat.	GM
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462515.8365407-UTR-Ecto-sp13_S_contig10211:410..421	1681462515.8365407-UTR-Ecto-sp13_S_contig10211:410..421	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10211 411..421 +
1681462515.8620334-UTR-Ecto-sp13_S_contig10211:538..660	1681462515.8620334-UTR-Ecto-sp13_S_contig10211:538..660	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10211 539..660 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462515.8491902-CDS-Ecto-sp13_S_contig10211:421..538	1681462515.8491902-CDS-Ecto-sp13_S_contig10211:421..538	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10211 422..538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10211.235.1	prot_Ecto-sp13_S_contig10211.235.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10211 422..538 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10211:411..660+
coding sequence from alignment at Ecto-sp13_S_contig10211:411..660+

protein sequence of mRNA_Ecto-sp13_S_contig10211.235.1

>prot_Ecto-sp13_S_contig10211.235.1 ID=prot_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MQRNGWSCAPGLLATVDHSASIVAAEELFCVENGPGFE*

mRNA from alignment at Ecto-sp13_S_contig10211:411..660+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10211.235.1 ID=mRNA_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:411..660+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGAGGAAGATGCAACGAAATGGATGGAGTTGTGCCCCTGGTTTGTTG
GCGACAGTGGACCACTCGGCATCAATTGTAGCAGCCGAGGAGTTGTTCTG
CGTGGAAAACGGGCCCGGTTTTGAATAGTTTGTCCGTGCTCTTGCTGCAG
CAGTTTTTGTATGATCGGAGAGGCTTCTGGTGTTTGTTTGAAGAGCGGCA
ACCTCCTGGTTTGAGTCCGGAGCCTGTCGCTCTCACAATATCGGTAGCAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:411..660+

>mRNA_Ecto-sp13_S_contig10211.235.1 ID=mRNA_Ecto-sp13_S_contig10211.235.1|Name=mRNA_Ecto-sp13_S_contig10211.235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:411..660+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACGAAATGGATGGAGTTGTGCCCCTGGTTTGTTGGCGACAGTGGA
CCACTCGGCATCAATTGTAGCAGCCGAGGAGTTGTTCTGCGTGGAAAACG
GGCCCGGTTTTGAATAG