Homology
BLAST of mRNA_Ecto-sp13_S_contig102061.228.1 vs. uniprot
Match: UPI0000161E56 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E56) HSP 1 Score: 62.4 bits (150), Expect = 9.630e-9 Identity = 46/98 (46.94%), Postives = 49/98 (50.00%), Query Frame = 1 Query: 151 DNNXXEQIAENVDKDDSGNVSD-------------------------LGDIGVQSSASSSIXXXXXXXXXXXXXEVGVTESLSGNKRTVEEYAGTSSD 369
DN E +A+NVDK DSGNVSD LGDIGVQSS SSS+ V ESLSGNKRT EEYAGTSSD
Sbjct: 488 DNERIESVADNVDKGDSGNVSDHRSSTSSSMEVSVDXXXXXXXXXSDLGDIGVQSSVSSSME---------------VAESLSGNKRTAEEYAGTSSD 570
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102061.228.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| UPI0000161E56 | 9.630e-9 | 46.94 | hypothetical protein n=1 Tax=Ectocarpus siliculosu... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 393 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 393 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462515.0904446-CDS-Ecto-sp13_S_contig102061:6..101 | 1681462515.0904446-CDS-Ecto-sp13_S_contig102061:6..101 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig102061 7..101 - |
| 1681462515.100649-CDS-Ecto-sp13_S_contig102061:188..486 | 1681462515.100649-CDS-Ecto-sp13_S_contig102061:188..486 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig102061 189..486 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig102061.228.1 >prot_Ecto-sp13_S_contig102061.228.1 ID=prot_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
GAENDSDDGGAENDSDDGGAEDDKDGGDDGGAEDDKDGGDDGGADNDKGT
DNNDNEQIAENVDKDDSGNVSDLGDIGVQSSASSSIKDDSGNVSDPGDIE
VGVTESLSGNKRTVEEYAGTSSDSDSDSDDD back to topmRNA from alignment at Ecto-sp13_S_contig102061:7..486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig102061.228.1 ID=mRNA_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102061:7..486- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCCGAGAACGACAGCGACGACGGTGGTGCCGAGAACGACAGCGACGA
CGGTGGTGCCGAGGACGACAAGGACGGCGGCGACGACGGTGGTGCCGAGG
ACGACAAGGACGGCGGCGACGACGGTGGTGCCGACAATGACAAAGGCACT
GACAACAACGACAACGAGCAAATTGCGGAGAATGTAGACAAGGATGACAG
TGGTAACGTTTCAGACCTGGGCGACATTGGTGTACAGAGCAGCGCAAGTA
GCAGCATCAAGGACGACAGTGGTAACGTTTCTGACCCGGGAGACATTGGT
GTACAGGGCAGCGCAAGTAGGAGCGTCAACCTGGGAGACGTTGGTGTACG
GAGCAGCACAAGTAGCAGCATGGAAGTCTCGGCAGAAGTTGGTGTCACGG
AGTCTCTTAGTGGCAACAAGCGCACCGTAGAGGAATACGCCGGCACTTCG
TCGGACTCAGACTCTGACTCGGACGATGAT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig102061:7..486- >mRNA_Ecto-sp13_S_contig102061.228.1 ID=mRNA_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102061:7..486- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCCGAGAACGACAGCGACGACGGTGGTGCCGAGAACGACAGCGACGA
CGGTGGTGCCGAGGACGACAAGGACGGCGGCGACGACGGTGGTGCCGAGG
ACGACAAGGACGGCGGCGACGACGGTGGTGCCGACAATGACAAAGGCACT
GACAACAACGACAACGAGCAAATTGCGGAGAATGTAGACAAGGATGACAG
TGGTAACGTTTCAGACCTGGGCGACATTGGTGTACAGAGCAGCGCAAGTA
GCAGCATCAAGGACGACAGTGGTAACGTTTCTGACCCGGGAGACATTGAA
GTTGGTGTCACGGAGTCTCTTAGTGGCAACAAGCGCACCGTAGAGGAATA
CGCCGGCACTTCGTCGGACTCAGACTCTGACTCGGACGATGAT back to top
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