mRNA_Ecto-sp13_S_contig10200.226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10200.226.1
Unique Name	mRNA_Ecto-sp13_S_contig10200.226.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10200.226.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 6.170e-159
Identity = 288/321 (89.72%), Postives = 293/321 (91.28%), Query Frame = 1

Query:  415 MGCQTTSGILDLLRWCTPRVLDLEGVSPTVTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSDGLSDGILKALAGRCPALSTLKIDACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAVSNFIVESEAVASGSLQSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLDCSTLTSRGAWYCTQHPSVEALAITIPLLPGPEPIPPAPEKSRRRAAGGVGGHRGDQQHRDADGEARAAAGVRNGGGAAGATAEQWACSRCTLLNPERR 1377
            MGCQTTSGILDLLRWCTPRVLDLEGVSP VTDSLLLRYPGESCAMLEEV LGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDV GS+GLSDGILKALAGRCPALSTL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAVSNFI+ESEAVASGSL SLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLL CSTLTSRGAW+C QHPSVE LAIT+ LLPGPEPIPPAPEK R         HRGDQQHRDA+GEARAAAGVRNG G AGA AEQWACSRCTLLN ERR
Sbjct:    1 MGCQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVCLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVGGSEGLSDGILKALAGRCPALSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSNFIMESEAVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLGCSTLTSRGAWHCAQHPSVETLAITLSLLPGPEPIPPAPEKPRXXXXXXXXXHRGDQQHRDAEGEARAAAGVRNGEGVAGAAAEQWACSRCTLLNAERR 321

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BLAST of mRNA_Ecto-sp13_S_contig10200.226.1 vs. uniprot
Match: A0A6H5JWL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL6_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 1.770e-104
Identity = 172/201 (85.57%), Postives = 176/201 (87.56%), Query Frame = 1

Query:  112 MDIPLRSEDVGNCSLRRYALDKVCSCLASADPDVRAALFSRLCGSGPPALSHPYSSPAGAATTSTASAAAALAKVP-PAGDEGSSVGIPSSIGDSIITRTGEMGCQTTSGILDLLRWCTPRVLDLEGVSPTVTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSDGLSDGILK 711
            MDIPLR EDVG+CSLRRYALDKVCSCLASA PDVRAALFSRLCGSGPPA SHPYSS  GAAT               P GDEGS VGIPSSIGDSIITRTGEMG QT+SGILDLL WCTPRVLDLEGVSP VTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGS+G+SDGILK
Sbjct:    1 MDIPLRGEDVGHCSLRRYALDKVCSCLASAYPDVRAALFSRLCGSGPPAPSHPYSSSGGAATXXXXXXXXXXXXXXXPPGDEGS-VGIPSSIGDSIITRTGEMGRQTSSGILDLLCWCTPRVLDLEGVSPAVTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVSGSEGISDGILK 200

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10200.226.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10200.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G8C1_ECTSI	6.170e-159	89.72	Hypothetical leucine rich repeat zinc finger prote...	[more]
A0A6H5JWL6_9PHAE	1.770e-104	85.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10200:104..5885-
coding sequence from alignment at Ecto-sp13_S_contig10200:104..5885-

protein sequence of mRNA_Ecto-sp13_S_contig10200.226.1

>prot_Ecto-sp13_S_contig10200.226.1 ID=prot_Ecto-sp13_S_contig10200.226.1|Name=mRNA_Ecto-sp13_S_contig10200.226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
CTIETPHTRSRHLNTQQTLEGRSAVHAVQESGREGTPMDIPLRSEDVGNC
SLRRYALDKVCSCLASADPDVRAALFSRLCGSGPPALSHPYSSPAGAATT
STASAAAALAKVPPAGDEGSSVGIPSSIGDSIITRTGEMGCQTTSGILDL
LRWCTPRVLDLEGVSPTVTDSLLLRYPGESCAMLEEVRLGWCPHLLEVEA
LLLKIRNAGVDGQEDEACALRVLDVSGSDGLSDGILKALAGRCPALSTLK
IDACPAVTGAFLPRLAEGCPSLDQLSADACTGITDAAVSNFIVESEAVAS
GSLQSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRA
CPGLLELSLLDCSTLTSRGAWYCTQHPSVEALAITIPLLPGPEPIPPAPE
KSRRRAAGGVGGHRGDQQHRDADGEARAAAGVRNGGGAAGATAEQWACSR
CTLLNPERR*

mRNA from alignment at Ecto-sp13_S_contig10200:104..5885-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10200.226.1 ID=mRNA_Ecto-sp13_S_contig10200.226.1|Name=mRNA_Ecto-sp13_S_contig10200.226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5782bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10200:104..5885- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACCATTGAAACACCACACACACGCAGCAGACACTTGAACACGCAGCA
GACACTTGAAGGAAGGAGCGCTGTGCATGCGGTGCAGGAAAGCGGGCGTG
AGGGCACACCCATGGACATACCGCTTCGGAGCGAGGATGTTGGGAATTGC
AGCTTACGGAGATATGCCCTCGATAAGGTGAAGGTTGAAGGTTGTCACTG
GGAAAACAACCGTTCGTAAAATGAGGCAAGCAGAGATGCTACTGGGGCAT
CCTACACATGCATTCTGGGTGAGTAGCTCTCGGTCACACGTGCGGCCATT
GACAGCACGTGAACCCATTGCTACTGTATCACAACTCTGCATGATGGCAG
CACCGATTTGTCTGTGTGCTTCATGTCCCGCATGGTGTGCGTGGACTCAC
CAGGATTTCAATGGATTTTGGCGATGCCTTCAATCCCCTCAAGCCGTAGT
CACAGCACGGCATTGTTGTCGCTATAAGCTACGCATTGAATGGGAAGGGA
GAGCGTAGGTGAGATGTCTCCAATCACCCCCATGATGGACGGGGTTGCTA
TGGATTGAAGAAAAAAAGTAGTTGCTGCGCATTCCCATCCAGTGTGCCCC
TTGGGCTGCTTGGCGCGCTTTGAGTCTGTCCCGTGCGAAACACATGCATA
CCGCCACGCTGCCCCCCGTGTTCTGCCAACGCTGTTGTGGCTTGGTATGG
CTACACTGTTGCAGTGAAGCTCTCGCCTTGTATCGGGGTCCGCCAAGAAA
CACTTTGGTTTTCTTGAACGATTTGTTCTCATTTTCGGTGATTTGAACTC
CGTCTTCTCTCCTCGGACCAGGACTACTATAGATTCGGACTGTTGCTGTG
ACGTCCATGACCAGGCGTCATCCCCTCCCCGCCAATATTTGGCCCTTCTC
ACCTGCGGCCGACACCCCACACACCACCATCGTTTCATTTTTCCATGTTG
TGCAGGTGTGCTCGTGTCTGGCGTCAGCCGACCCCGATGTCCGGGCGGCC
CTCTTCTCGAGACTCTGCGGTTCTGGTCCGCCGGCCCTCTCCCACCCGTA
CTCCTCCCCTGCTGGGGCCGCTACTACATCCACAGCCTCCGCCGCCGCGG
CCCTCGCTAAGGTTCCCCCAGCAGGCGACGAAGGTAGTTCTGTCGGCATC
CCATCGTCCATCGGCGACAGTATCATCACTAGGACTGGAGAGATGGGCTG
CCAGACGACGAGCGGCATTCTAGACCTGTTGCGCTGGTGTACGCCAAGAG
TCTTGGACCTGGAAGGGGTGTCTCCTACGGTCACCGACTCGTTGCTACTC
AGGTACATAGGTTGATGTGCGAGCGTTTTTGTTTACGACCATGTACGCGG
TCTTGAACGAATGCGGAAGTCTCGAACGCGTGCAGAACTCCTAAACGAAT
GCAGGAGAGGTGCTTCGCGTGTGTAACGTCATAGGCGTGTGCAATTCGTA
GCTTGTCTCAAGAAATTCTTCGCCGGATTTCAGGGAGGACAACAATCCCG
ACCAGAGCAACAGGCTACTTTTTGGTTTTGGCTTTCCCTTGGCCAAGCCC
CAGGAACTGTAGCCAGCATCTCGCCATGTACACCCACACCCACGCCCAGC
ATTCTTCTTCACCGCCTCGGCGCCACATTATCGCACCACCTCGCATGCTC
GTTAAAGGTACCCAGGAGAGTCGTGCGCGATGCTGGAGGAAGTGCGTCTG
GGCTGGTGCCCTCACCTGTTGGAGGTGGAAGCGCTTCTGCTTAAGATCAG
GAACGCTGGCGTCGATGGGCAGGTGCAGCAGCTGGGGAGGGATCCTTGAC
CTCTCATGTTGGTCAACCTTTTTGCGTGCACACCCAGGCAGGCGTCTGGA
GCGGGTGTCCGGGTTAGGGCCGGGGGAGTTCGCCCAAACGATTTTGCTCG
AGCGCGTGGTAGACGATGGCGGGTGTCCCATGGTCAAAATGCTACCTCTC
TGATAATACTCTTGTATCTCTCTCTCCAACCCCGTGGAATGCACACGATT
GTTGCGCCGACGGCTAGAGATTTCGGCGTCAAATATTATGCCCTCAAGAA
ACACTTGCAGAATTGGTGAATACAGTCTTCTTGAACAGGATAGAAACTCC
TTTGGCATTGAGATGAGGAGACTCGATTGGTGTGACACAAACTTTGTTGA
AGGTACATGACGTTCCGGAGTCCGTTCGAGGCAACAAGCGATTTCCCAAA
ATCGAGGCAACAAGCGAAGGAATCGAGATCAATCAAGTCTGTTTTTTTTG
GCACAAAAAATAAAGCATCGAGGAGTCTGTGAATCTTTGCGCAATCCCTG
CGGGGAGAACCAACGGTTCCTATTTTCAAGAAAGGTACCGGCTCAACTGT
CAAGGATTCTGGAGGTCGGTGGTATATACCATTTCACATTTTAAGGGGTC
GTTGCTACTTGACTCAAACCCTCCGATCGTGCGTACTCACCTGACCTTCG
AGGGTGGCATGGCATCCCCTCAGTAATTGATCCCTGGGGTTCGATGTCTC
CTTGCATATTGCCGCTCAGGAAGACGAGGCTTGCGCTTTGAGAGTTCTGG
ACGTTAGCGGCAGCGATGGACTTTCCGACGGCATCCTGAAGGTGAATCGA
GTTCTTTTTGGGGGGGGGCGTCGCGGTCGGATGCTCTGAACAGGGACTTA
CGGTCAACCTGGAAATATTGAGAGACGGGCACCACGGCAAAGGTCTTATA
TTTGTTTGCGCCAACGGGAGCGCAATCCACTGTCGTTGATAATAAGCGAG
ACCGGGGCGCGTTTGCTCCGCTGTGTGGAACATCTTTTGCAGCCGGTCGA
CCTTTGTTGCCACCGCATGAAACATGCTCTGAGTAGATGGCAAAGACGAG
TGGGCTGTGTACCACCACGTGTGGAGGATCAAGCTCCCCACAAGAACCAC
CTTCAGTTCAGCCTTCTTTCACTTCGCTCGGCCCTGGAGTAAGCCTGAGA
TCACGCCGTCGCCTTCAGTGTGCCGCATGACGGGCAAGCCTTGCGCGACA
ACCAAGCAACCCGCAGCTTCTTGTTTCGGCACCTACGATACCTCCGGTTT
CCAGCCTGGGCTAGTACACCCTTCCTTGCACCGCACACTTGGTGTTTTAG
CTCGTGACACCGTGTACAGCGGCGTGCAACGGGTCTACTGGTAGAGTTTC
GCTGACGCCAAGCGCACGCTACCCACCTCTTACCTCGTGTTTGGGTTGGA
GCTGGCCCCTCTTTTCCACGATTGCGACTGTTTTGTTCGACCTCTTGCCA
TTGTTCGCTGCGGGCGGCGGCGGGCAGGCCCTAGCCGGGAGGTGCCCCGC
ACTGTCCACGCTCAAGATCGACGCGTGCCCTGCGGTGACGGGAGCGTTCC
TCCCGCGCCTCGCCGAGGGGTGCCCCTCTCTCGACCAGCTCAGCGCCGAC
GCCTGCACAGGTGGGGAGAAAGACATGTCCGCCCGGCGCAGTGGTCATTG
ACTGATGGGGTCTGGTATTCCGCTCGCTTCTTTCATTGTGTAGAAAGATG
AAAGGTGCGCCCGCTCCAGCGATTGTAGCCAGACGACGCTCGTGCACGTC
TGGAAGGCGTGCATGCGACGTACGAGTCGCTTTTTTGCTGGCGTTGTCAC
CGCTCGCAAACTGTCGCGAGATTTCGGTCCATGGCGCGAGCCTGGACCTG
TTGTATCGACGTAGAAGCGGGCGCTTTTCTGCGCTGTGTTGGAAACTTGT
CGGAGGTGCTGGCGCCCCCGCGTCACTCATTAGCTCACTTCCGTTCCCCT
CAGCCAAGATATTTGATTTTTATCATTTCTCCACTGTTGCTTTTGGTCGA
CGAACTGGCCCTGCTCTGTGCCTGGCTTAATGCCACCAACCATGTGGCAC
AGGCAGATCTCGCGTGTTTTTTCTCGCAGCGATACCTGTGCTATCGCGCA
TCTCGCGTGGCCGCCATGGGGACTGCTCTCGAGCAAGACGGAGCATGCCG
TGGCACACGCTACCGCCAAGCCTGACTACGGCCGCTACCTCAAGCCTAGC
CTAGACTTTTATGTGCAGTCCCTGCTCGACATCATGTATGACGATGTTCT
CTCTGTTTTTTTCTTTTTCGTAACCAGGCATTACAGACGCCGCGGTGTCG
AACTTCATAGTGGAAAGCGAGGCCGTGGCCTCGGGATCTCTGCAGTCGCT
CCGCTTGGGTGGCTGTCCAATTGGTTCTCTTACCGCCCAGGTGAGTACGG
TTTCATGGATCCTCGATACAGCGGTTGACACCCACGTTTAAGGAACGTCA
ATTTGGGGGCGAGGCCCAATTTTCTAGTTTCGTCAACACGATCGTTATAT
AGATTTTAGTGTAGGATCCACGGCTGAGGTATGTTTGTTAGTGGATTTTC
ATCTTTTGGTAGCCAAGATTGGAAGTCACAGTTTCTCAACAGGTTCGTTG
CTTATGTTGCCGGCGCTACCTGTATATGACTTCGGCCTATTGCTAGCGTC
GGCACTCCGCCGACTATTTGTTTTCTTGTCGCGCCGAAGGTTTTGTTTTC
CCGGTGCTAGGTTTTGCCGACAGGGTTTCCAGGTGTACCTGGTGTAAGCG
TTGTGTATGTCGCAGGGTCTGCGATCTCTGAACTCCGTGCCCGCTCGCTG
CAGCGAGGACGTGTGTTAGGTACATCAGGAACGTTCGCACACCGCAGAGG
GGGGCGCCGCCGCCGCGTGAACTGAGGTTTCGGTTTCACATGAACACCGA
CACTTGCGAAGACGGGGTCGTTGTTCGGCTTTGGGCGGGCTGGGTTCCCT
CCCCGCTCTCCCTGCCTTGTCCATACGAGAAACTCACTGTCTCAGGCCCT
CGCACGCTACGTCATGAAGGCGGTGTGCTTCTGGACAGCAATAACGCCAC
GCCCTATCGATGTATGGATCGTTGGCTCAAGCGAGTTTCTTGTGCTCCCC
CCCCCGTGTTAAAAACAGGCGCTTTTGATGCGTGGGTCCTGTCTGCTTGA
GCTCAACCTCGACGGCTGCTCTGGGTTCGGGGACGCGGCTGTTCGCATGG
TCTGCCGCGCGTGCCCCGGCTTGCTGGAGCTGAGCCTTCTAGACTGCTCG
ACGGTGCGAGATTCTTGCTTCCGCGGGGGTGGTGCGGTAGCTCGCTTGAC
TCTGCTGAACGGGGTGCAGGCATGCGCGTTGGCTGCTGACCTCGTGATGC
TTCCCGGCGTCGGTGGGCTGCTGTGTGCTTGTTGTCTCTTCAGAACGACG
AAATTTCCTCCATCCGAAAGGGTTTGTTTCGTAGGACCTTCCGTGTTGGC
CTGTAACGAAGCTTTGTCCAGTTTTCTTGCATCAAAGCATGCGAACCGTC
GGTTTTTACCTACTACTGTTCGTTTTTGTTTTGTCATCATCGCTCACAAG
ATTTTATTTGCATGCGTTCTGAACAGGCGACCCCCCCACCCCCCCTCATG
TCTCGAGAAGTCGCGATATGTGTGTTGAAATGATGTACATGACCCCTTAC
CCCTATCCCCCCCCTCAACACGCGAACAAACGTTTTCGTCGAAGCTCACC
TCCCGCGGCGCGTGGTACTGCACCCAGCACCCCTCCGTGGAAGCCCTGGC
GATAACGATACCACTTCTGCCAGGCCCCGAGCCAATCCCCCCGGCCCCAG
AAAAATCGAGGCGACGTGCGGCAGGAGGTGTGGGGGGGCACAGGGGCGAC
CAGCAGCATCGCGACGCTGACGGCGAAGCGAGGGCCGCAGCCGGCGTCCG
CAACGGCGGGGGGGCAGCGGGAGCGACGGCCGAGCAGTGGGCGTGCTCTC
GGTGTACTCTGCTCAACCCGGAGAGACGGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10200:104..5885-

>mRNA_Ecto-sp13_S_contig10200.226.1 ID=mRNA_Ecto-sp13_S_contig10200.226.1|Name=mRNA_Ecto-sp13_S_contig10200.226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10200:104..5885- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACCATTGAAACACCACACACACGCAGCAGACACTTGAACACGCAGCA
GACACTTGAAGGAAGGAGCGCTGTGCATGCGGTGCAGGAAAGCGGGCGTG
AGGGCACACCCATGGACATACCGCTTCGGAGCGAGGATGTTGGGAATTGC
AGCTTACGGAGATATGCCCTCGATAAGGTGTGCTCGTGTCTGGCGTCAGC
CGACCCCGATGTCCGGGCGGCCCTCTTCTCGAGACTCTGCGGTTCTGGTC
CGCCGGCCCTCTCCCACCCGTACTCCTCCCCTGCTGGGGCCGCTACTACA
TCCACAGCCTCCGCCGCCGCGGCCCTCGCTAAGGTTCCCCCAGCAGGCGA
CGAAGGTAGTTCTGTCGGCATCCCATCGTCCATCGGCGACAGTATCATCA
CTAGGACTGGAGAGATGGGCTGCCAGACGACGAGCGGCATTCTAGACCTG
TTGCGCTGGTGTACGCCAAGAGTCTTGGACCTGGAAGGGGTGTCTCCTAC
GGTCACCGACTCGTTGCTACTCAGGTACCCAGGAGAGTCGTGCGCGATGC
TGGAGGAAGTGCGTCTGGGCTGGTGCCCTCACCTGTTGGAGGTGGAAGCG
CTTCTGCTTAAGATCAGGAACGCTGGCGTCGATGGGCAGGAAGACGAGGC
TTGCGCTTTGAGAGTTCTGGACGTTAGCGGCAGCGATGGACTTTCCGACG
GCATCCTGAAGGCCCTAGCCGGGAGGTGCCCCGCACTGTCCACGCTCAAG
ATCGACGCGTGCCCTGCGGTGACGGGAGCGTTCCTCCCGCGCCTCGCCGA
GGGGTGCCCCTCTCTCGACCAGCTCAGCGCCGACGCCTGCACAGGCATTA
CAGACGCCGCGGTGTCGAACTTCATAGTGGAAAGCGAGGCCGTGGCCTCG
GGATCTCTGCAGTCGCTCCGCTTGGGTGGCTGTCCAATTGGTTCTCTTAC
CGCCCAGGCGCTTTTGATGCGTGGGTCCTGTCTGCTTGAGCTCAACCTCG
ACGGCTGCTCTGGGTTCGGGGACGCGGCTGTTCGCATGGTCTGCCGCGCG
TGCCCCGGCTTGCTGGAGCTGAGCCTTCTAGACTGCTCGACGCTCACCTC
CCGCGGCGCGTGGTACTGCACCCAGCACCCCTCCGTGGAAGCCCTGGCGA
TAACGATACCACTTCTGCCAGGCCCCGAGCCAATCCCCCCGGCCCCAGAA
AAATCGAGGCGACGTGCGGCAGGAGGTGTGGGGGGGCACAGGGGCGACCA
GCAGCATCGCGACGCTGACGGCGAAGCGAGGGCCGCAGCCGGCGTCCGCA
ACGGCGGGGGGGCAGCGGGAGCGACGGCCGAGCAGTGGGCGTGCTCTCGG
TGTACTCTGCTCAACCCGGAGAGACGGTAG