Homology
BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Match:
D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)
HSP 1 Score: 283 bits (724), Expect = 2.440e-80
Identity = 418/479 (87.27%), Postives = 421/479 (87.89%), Query Frame = 1
Query: 10 WAEEGGAKNLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGKHLGAWATDSSGAPTGGXXXXX-QASFPSHPSPLAGAGEERTSETRWRKQANGASANDAAAASSSRRTGRSLSARDLRAAAXLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRDNEGSPTHFGVAERGXXXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSATGPSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSFSHT 1437
WA GAKNLRLEVKG GD DDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGG++LG WATDSSGAP XXXXX QASFPSHPSPLAGAGEERTSETRWRKQANGASA DAA SSSRRTGRSLSARDLRAAA LDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PMLSDFDTLTLGGSERPVTPVGEESQTTYQLPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXR+TYGWAGAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX PSATGPSSPRLIKGGFGPANPLSWTAKDNASG GGNTSFSHT
Sbjct: 904 WAGGRGAKNLRLEVKGDGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGRNLGPWATDSSGAPXXXXXXXXXQASFPSHPSPLAGAGEERTSETRWRKQANGASATDAAG-SSSRRTGRSLSARDLRAAAALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXRITYGWAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSGPVRRKERGDGPSSPXXXXXXXXXXXXXXXXXXXXXQPSATGPSSPRLIKGGFGPANPLSWTAKDNASGTGGNTSFSHT 1379
BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Match:
A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)
HSP 1 Score: 282 bits (721), Expect = 6.260e-80
Identity = 401/466 (86.05%), Postives = 402/466 (86.27%), Query Frame = 1
Query: 34 NLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGKHLGAWATDSSGAPTGGXXXXXQASFPSHPSPLAGAGEERTSETRWRKQANGASANDAAAASSSRRTGRSLSARDLRAAAXLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRDNEGSPTHFGVAERGXXXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PSATGPSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF 1428
NLRLEVKGHGD DDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSE EGGKHLGAWATDSSGAPTGG QASFPSHPSPLAGAGEERTSE RWRKQANGASANDAAA SSSRRTGRSLSARDLRAAA LD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PMLSDFDTLTLGGSERPVTPVGEESQT YQ+P A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P ATG SSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF
Sbjct: 1047 NLRLEVKGHGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEEEGGKHLGAWATDSSGAPTGGGGAGGQASFPSHPSPLAGAGEERTSEARWRKQANGASANDAAA-SSSRRTGRSLSARDLRAAAALDVGSGGGCDTASPSRMPAEKGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVVPMLSDFDTLTLGGSERPVTPVGEESQTAYQIPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLATGSSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF 1509
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.44e-80 / Id = 87.27 Expect = 6.26e-80 / Id = 86.05 Sequence D8LLR2_ECTSI A0A6H5JEL9_9PHAE
Match Name E-value Identity Description
D8LLR2_ECTSI 2.440e-80 87.27 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JEL9_9PHAE 6.260e-80 86.05 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 290.8 Seed ortholog evalue 1.2e-75 Seed eggNOG ortholog 2880.D8LLR2 Preferred name ATMRK1 Model size 1487 KEGG ko ko:K04424,ko:K16799 KEGG Pathway ko04010,ko04341,map04010,map04341 KEGG Module M00678 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564 Exons 2 EggNOG free text desc. clathrin-coated pit assembly EggNOG OGs COG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759 EC 2.7.11.25 Cds size 1485 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462514.1013095-CDS-Ecto-sp13_S_contig10199:2256..3693 1681462514.1013095-CDS-Ecto-sp13_S_contig10199:2256..3693 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10199 2257..3693 - 1681462514.1127508-CDS-Ecto-sp13_S_contig10199:4351..4399 1681462514.1127508-CDS-Ecto-sp13_S_contig10199:4351..4399 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10199 4352..4399 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10199.219.1
>prot_Ecto-sp13_S_contig10199.219.1 ID=prot_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=495bp
NGGWAEEGGAKNLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKD back to top mRNA from alignment at Ecto-sp13_S_contig10199:2257..4399-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10199.219.1 ID=mRNA_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10199:2257..4399- (Ectocarpus species13 EcNAP12_S_4_19m)AACGGCGGCTGGGCAGAAGAGGGAGGGGCGAAGAACCTTCGCCTTGAG GT
GGGTGTGGGTGATGGTGTGATGTTTATTGTTCTTGTTCTCGAGGATGGCG
CGCTACAAAAACAGAGGCAGCGATGTCGGGGTATACTCGTTGGGTCGCGT
GCTGCACCCTCAAACGTATGCATATCTCGCAAAGTTGCTTGCGTGGTACT
TCTAGAAGATGCGGTAGGTCACGCAAGACTCCGCAACCCCTAGGGCGATC
TTCAAAGCTCGGTTACTGCACAGCAGGGACAGGGCCGGAAATCGAGGCGT
TGGAATTTTTGTCTTCGAGAGGTTTCCGAAAACTTGTCATTTGGCGTCTT
CTTCTTCGCCGTGGAGTAATCGAGCTTGGACGTTCGTTCAGTCCAGGGGA
TGCGGTATCTTGTGCGACTTACGGTGTACATGTGCGACCCCGGTACACGG
GCACCGGTAACGCTGCACAGCGCCGGGTATTGTTGCTGCTGCTGTTGCCA
CGCATTGAGTTGTTCTCACGAACGTCTTGTGCAACTCTCGGGATCGGTCG
CCTCGGCGTTCGTAGCCTGGTCGGTACCTTAGGGTCGCGGGTTCGAAGTA
TCTCCAACCACAAATCTAGACAGAGAAAAGTCTAGTGCGTTATTTTGTGA
AGCCGCCCGGTTAAGCGCGGTGGATGCTAACGGTCAAGACACCCACGTGC
ACGCAGGTCAAAGGCCACGGTGATGCAGACGACGGGAGCGAGTGGGGCAA
CTACTACAGCTGGCAGGGTCCCGACAGCCGCGCCCCGTCCTCCGGCCAGG
CGAAGGACGGCACCTTCGGCGTGCGCCGCCAGAGCAACCAATCGGAAGGG
GAGGGGGGCAAGCACCTCGGAGCGTGGGCAACCGACTCTTCCGGTGCTCC
CACAGGCGGCGGGGGAGGCGGAGGGCAAGCGTCGTTTCCCAGCCACCCCA
GCCCCTTGGCCGGAGCGGGCGAGGAGAGGACGAGCGAGACTCGCTGGAGG
AAGCAGGCCAACGGCGCGAGTGCTAACGACGCCGCCGCCGCTTCCTCCTC
CAGGCGTACCGGTAGGTCCTTGTCAGCCAGGGACTTGCGGGCTGCTGCTG
CCTTGGACGGCAGCGGCGGCGGAGGGGGTCACACCGCGTCGCCCTCGAGA
ATGCCGCCAGAGAAGGGCACGGGGGCGGGAGGGGGCAGGAGGAAGGGTGA
GGTGGCGGGGAGGCGAAAAAGCTCCAACGAAGGCAACGGTGACAACGCGC
ACCAGGCGGCGTCTACGGCGGCGTCAGCGGCGGCGGCGGCCCCGATGCTC
AGCGACTTCGACACGCTCACGCTGGGAGGCAGCGAACGGCCCGTCACCCC
CGTCGGCGAAGAAAGCCAGACCACCTACCAACTACCGGCAGCGGCGGCGG
CGGCGGCGGCGGCAGCCGGCGCAGGCGAGAGCGGCAGCAAGAAACAGTTG
GCGCTTCGGAGAGAGAGGACGCACCCGCCACCCCTGCCGCCGCGCCGGGA
TAACGAGGGTAGCCCTACCCACTTCGGGGTTGCCGAGAGGGGCGGTTCGC
AGCAGCAGGATCCGTCGGGAGCCGCGGCGGCGGGGTCGGGCGTGGCGCCC
CCGCCGCTGCCTCCCAGGGTCACCTACGGGTGGGCCGGCGCGGCAGGGGT
GGTTGCTACCTCACAACAGGTCGACCCGACTGCCGGAGCCGCTGCTGCGA
CCGGAGGCGGCGGTGGCGGGGCGGGGCGATCAAACGCTTCTTCGCCGCCT
CCTCCTGACCCTCCGTCGCTAGCAGGGGTCCGCGGCGCTTCCTCTGCTAG
CGCGGCGGTGACGGCAGGAGCATCCGTCGGGGGGGGCGGAGTGGTGAGGG
CCAACAGCGGCTCGGTCAGGAGGAAAGAGAAGGGGGACGGGCCGTCTTCC
CCGCGAAAGAGAGCAACAGAACGGGGCGGCGGGGACGCGCCGTCGTCCTT
GCTGGTGCAGCAGCAGCAGCCTTCGGCGACGGGGCCCTCTTCGCCGAGGC
TGATCAAGGGCGGCTTCGGCCCCGCCAACCCGCTGTCGTGGACGGCCAAG
GATAACGCCTCCGGCGCCGGAGGCAACACCTCCTTCTCGCACACCAACAC
AGAGAACAAACGGCCGGCTCCGGGTGTCGGGGGGGGAGCGGGG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10199:2257..4399-
>mRNA_Ecto-sp13_S_contig10199.219.1 ID=mRNA_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10199:2257..4399- (Ectocarpus species13 EcNAP12_S_4_19m) back to top