mRNA_Ecto-sp13_S_contig10197.216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: D7FS56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS56_ECTSI) HSP 1 Score: 1016 bits (2628), Expect = 0.000e+0 Identity = 608/734 (82.83%), Postives = 625/734 (85.15%), Query Frame = 1 Query: 1 QIKCAERPRQTGGAGGGDSRSPGECILAHLESRTQLLRACLALRDAFTNKQRLKRLKALEKRRSEELAQKTVGAGASGTPTTEGAAXXXXXXXXXXXXXXXXXL-TEGQKNXSRSAATTSGPEDDVEVDSEVVAAATGLAAMSIGGRCPAKAVQLDGRGTAEGDGRVGSGTVASAIGGRDGEECGAEASSAEVKGGQEFLAAENGCGDAVGLVVEGRAVGTTGGGAGGTTGTALATPRAGEVRERGGXXXXXXXXXXXXXHLQQPSESACDGIETPLNGIARCGDHLRAAALALEYLLSIEAFIPGGTSAKTTHETARNRPPXXXXXXXXXXXXXXXXXXXXXXXXXXRKTPPLPPVRLGGDAGEFAFEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLLLLAREAERACGVIRCDDLLDVRRSLLRLYQPPAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQLPSAHEWSGMFWYWDYVMTTKMMAEGSLKESKDQLEAVKAQMEEERVMAKELQQVAQAAEAAELAHATAPAXXXXXXXXXXXXXXXXXXXXXXGGSKAKKPDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCARGKKEEAACATTGAQKTQREIRY 2199 +IKC E RQTGGAGGGDSRSP ECILAHLESRTQLLRACLALRDAFTNKQRLKRLKALEKRR+EELAQKT GAG +GTPTTEGAA XXXXXXXXXXXXXXXX GQ+N S SA TSGPEDDVEVDSEVV AATGLAAMSIGGRCPAKAVQLD GTAEGDGRVGS TVASAIGGRDGEECGAEA SAEVKGGQEF AAENGC +AVGLVVEGRAVGTTGGG GG TGTALA P +GEV ER G XXXXXXXXXXH QQ SE A D IETPLNGI RCGDHLRAAALALE LL+IEAF+PGGTSA+TTHE ARNRPP RK PPLPPVRLGGDAG FAFEAEMNRHLLGSSPQHHVHFRRGRAEGPR+LLLLAREAERACGVIRCDDLLDVRRSLLRLYQPPAESKGG ++GTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYA+TVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIG+ELQLPSAHEWSGMFWYWDYVMTTKMMAEGSLKESKDQLEAVKAQMEEERVMAKELQQVAQAAEAAELAHA XXXXX XXXXXXXXXXX SKAKKPDAA CARG+KEEAACA+TGAQKTQREI + Sbjct: 289 RIKCTEPLRQTGGAGGGDSRSPDECILAHLESRTQLLRACLALRDAFTNKQRLKRLKALEKRRAEELAQKTAGAGDAGTPTTEGAAEXXXXXXXXXXXXXXXXXXAAGQQNGSGSATATSGPEDDVEVDSEVVEAATGLAAMSIGGRCPAKAVQLDDGGTAEGDGRVGSSTVASAIGGRDGEECGAEAGSAEVKGGQEFPAAENGCSNAVGLVVEGRAVGTTGGGPGGKTGTALAAPCSGEVIERKGEEGXXXXXXXXXXH-QQRSECARDDIETPLNGIVRCGDHLRAAALALESLLAIEAFVPGGTSAETTHEAARNRPPVGGGVTAGAGAVTLSAAANRQGNGGNRKMPPLPPVRLGGDAGGFAFEAEMNRHLLGSSPQHHVHFRRGRAEGPRALLLLAREAERACGVIRCDDLLDVRRSLLRLYQPPAESKGGPAIGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYASTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGVELQLPSAHEWSGMFWYWDYVMTTKMMAEGSLKESKDQLEAVKAQMEEERVMAKELQQVAQAAEAAELAHAXXXXXXXXXTPALSGXXXXXXXXXXXXXSKAKKPDAAAEAASPGPEASPAGSGAEVGGVKGMEGSCARGEKEEAACASTGAQKTQREISW 1021
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A836CGZ5_9STRA (Mak10 subunit, NatC N-terminal acetyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ5_9STRA) HSP 1 Score: 189 bits (481), Expect = 7.090e-47 Identity = 109/252 (43.25%), Postives = 147/252 (58.33%), Query Frame = 1 Query: 1087 GEFAFEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLLLLAREAERACGVIRCDDLLDVRRSLLRLYQPP---AESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQLPSAHEWSGMFWYWDYVMTTKMMAEGSLKESKDQL 1833 G F + NR LLGS+P V F E L+A+ ACGV+ C L DVRR LL L PP A + G+ +G ++ RS+AAVCLYR +++LGRFDV FV +AM GVP ++ S G+ ++ KP+YE LR LCLNR R R+ LEL M DW +Q A DDA +L Y L T Y+S WA E LGLM Y+Q G++L+L HE ++WYWDY+++ + + L + K+QL Sbjct: 364 GPPVFNRDFNRSLLGSTPSRRVLFPL-LGEAYERAALMAQHCCGACGVMACGSLNDVRRHLLELAAPPLTVALKEKGAYMGP-TILPRSIAAVCLYRGELLLGRFDVNDFVVDAMVAAGVPASLAQSQPGLPVVESAVKPIYEDLRGLCLNRSRLRLKLELAMVDWCGIQDAAARADDALRLSYQLPDTTPHYLSNWATREALGLMQLYVQAGVQLELYGRHELCHVYWYWDYILSAMLHIDCVLLDGKEQL 613
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A6U2L823_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L823_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.150e-22 Identity = 73/199 (36.68%), Postives = 113/199 (56.78%), Query Frame = 1 Query: 1309 SSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVD-----DAFQLQYGLGAGTQRYMS------KWALTEVLGLMHRYLQIGLELQLPSAHEWSGMFWYWDYVMTTK---MMAEGSLKESKDQLEAVKAQMEE 1860 S G ++ RS+ LY D++LG++ FV +AM D GVP ++ ++P GM+F+DRV KP Y++LR LCLNRGRQ+ ++ + ++DW LQ A +D +A + Q + R MS W + E L LM + +G+E +L A E FWY D++++T+ M A ++KE K ++ VKA EE Sbjct: 52 SQHGPPNILTRSLLVANLYFNDLILGQWSATDFVHDAMHDAGVPSSLTSTPYGMSFVDRVVKPAYDSLRLLCLNRGRQKECIDAIILKDWGLLQQEAKAIDYHYNEEALEQQQTSNSSVSRKMSARFHATNWIIAETLSLMEGSISLGVEAKLFQA-EIDAAFWYRDFLISTQLNVMTAWRNIKEEKAKM--VKALEEE 247
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S2RN56_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RN56_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.880e-21 Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 1 Query: 1327 SLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQLPSAHEWSGMFWYWDYVMTTKMMAEGSLKESKDQLEAVK 1845 S+ RSV A+ LY D+VL + + + + + GVP S G+A L R+ KPVY+ LR L LN+ RQR ++ + +W T+Q A VD GL +Y S+W+ ++L LM ++ +G ELQL E ++WYW+Y+++ ++ + + QLE K Sbjct: 16 SVIHRSVIAMNLYVDDLVLAKLPFTQALIQLLDEDGVPQVATTSEYGIALLQRLAKPVYDLLRLLTLNKNRQRQRIDDLLPEWDTIQQEAQLVDQNVCETAGLALDAFQYCSRWSFAQMLRLMQEHVSLGFELQLYHQDELDAVYWYWNYLVSARLHVVSLQLDHRAQLEKEK 188
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S4K6Q2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6Q2_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.550e-20 Identity = 77/259 (29.73%), Postives = 135/259 (52.12%), Query Frame = 1 Query: 1081 DAGEFAFEAEMNRHLLGSSPQHHVHFRR--GRAEGPRSLLLLAREAERACGVIRCDDLLD------VRRSLLRLYQPPAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDV-GVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQL-PSAHEWSGMFWYWDYVMTTKMMAEGSLKESK 1824 D +F++ +NR LLG++P V F+ G E SL + E + A CD LL +RR L + S + ++ +RS+ + LY D++LG+ + +++ M + G P ++V + G +FL+R+GKPVY+TL+ L LNR RQR + L ++W L+ A VD ++ + + + + + L + LM +L G+EL L P H+ S FWYWD++++T++ ++++K Sbjct: 80 DVVSQSFDSFINRRLLGNAPVRKVKFQNHIGSLE---SLATVMEEIDWAA----CDLLLHGSTLGRIRRMLAHI-----------SASSVNILSRSIIVLNLYFDDLLLGQHSLSQMISQHMQQISGAPSSLVETDYGRSFLNRLGKPVYDTLKVLALNRNRQRAYADALMFREWAGLKMEAAAVDYYYKQEKDSDLQSTPFATNYVLHTTVWLMEHHLGTGVELGLFPGHHDLSVAFWYWDFLLSTQLNISTVMRKAK 320
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S4K6S4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6S4_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.380e-20 Identity = 77/259 (29.73%), Postives = 135/259 (52.12%), Query Frame = 1 Query: 1081 DAGEFAFEAEMNRHLLGSSPQHHVHFRR--GRAEGPRSLLLLAREAERACGVIRCDDLLD------VRRSLLRLYQPPAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDV-GVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQL-PSAHEWSGMFWYWDYVMTTKMMAEGSLKESK 1824 D +F++ +NR LLG++P V F+ G E SL + E + A CD LL +RR L + S + ++ +RS+ + LY D++LG+ + +++ M + G P ++V + G +FL+R+GKPVY+TL+ L LNR RQR + L ++W L+ A VD ++ + + + + + L + LM +L G+EL L P H+ S FWYWD++++T++ ++++K Sbjct: 322 DVVSQSFDSFINRRLLGNAPVRKVKFQNHIGSLE---SLATVMEEIDWAA----CDLLLHGSTLGRIRRMLAHI-----------SASSVNILSRSIIVLNLYFDDLLLGQHSLSQMISQHMQQISGAPSSLVETDYGRSFLNRLGKPVYDTLKVLALNRNRQRAYADALMFREWAGLKMEAAAVDYYYKQEKDSDLQSTPFATNYVLHTTVWLMEHHLGTGVELGLFPGHHDLSVAFWYWDFLLSTQLNISTVMRKAK 562
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S1ZRS6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRS6_TRICV) HSP 1 Score: 105 bits (261), Expect = 6.650e-20 Identity = 78/255 (30.59%), Postives = 135/255 (52.94%), Query Frame = 1 Query: 1090 EFAFEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLLLLAREAE-RACGVIRCDDLLD-VRRSLLRLYQPPAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDVGV-PDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVDDAFQLQY-----GLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQL-PSAHEWSGMFWYWDYVMTTKMMAEGSLKESK 1824 + F+A +NR LLG+SP V F+ A SL + E + AC ++ C L +RR L+ + Q SSV ++ RS+ + LY D++LG+ + +A M + P ++ NS G +FL+R+GKP+Y+TL+ L LNR RQR + L +++W TL+ A VD Q + G+ Y + + L + +M + G+EL L H+ + +WYWD++++T++ +++++K Sbjct: 66 DSCFDAYINRRLLGNSPVRKVRFQ-CHAGALSSLSKIMSELDWAACDLLLCGGTLGRIRRVLVHISQ--------SSV---NVLGRSLIVLNLYFDDLLLGQHGLPVLIARDMVQLSACPSSLTNSDYGRSFLNRLGKPIYDTLKILALNRNRQRAYADALMIKEWATLKTEAAAVDYYHQKELCTKLGGVPGTAMPYATNYVLQTTVWIMEHHHGAGVELGLFHGQHDLAIAYWYWDFLLSTQLNVTTAMRKAK 308
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S1ZHY9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHY9_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.630e-19 Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 1 Query: 1099 FEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLLLLAREAERACGVIRCDDLL-------DVRRSLLRLYQPP---------AESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMT-DVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVDDAF------QLQYGLGAG----------TQRYMSKWALTEVLGLMHRYLQIGLELQL-PSAHEWSGMFWYWDYVMTTKM 1794 F++ +NR LLG++P V F P + + R CD LL ++R L + P + S +++ T ++ RS+ + LY D++LG++ + +A M GVP +V++ G +FL R+GKP+Y+TL+ L LNR RQR ++ L M++W LQ A VD + Q Q L A T Y++ + L + LM +L IG+EL L H+ S +WYWD++++T++ Sbjct: 340 FDSNVNRRLLGNAPVRKVQFL-----SPLNTIQSLRNTLHEIDYAVCDLLLLEHHTLSRIQRQLSSISSPVNSSVVKGDGSSSSSNNTINTINILGRSLIVLNLYFDDLLLGQYVLSDIIASHMKHSAGVPHELVDAEYGKSFLHRLGKPLYDTLKVLTLNRNRQRAYMDALMMREWSALQREATAVDYYYREDVEVQKQQQLIASSPITTAKPTTTTPYVTNYVLGIGVWLMEHHLGIGVELDLFCGEHDLSIAYWYWDFLLSTRL 601
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A7S4RDG7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDG7_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.250e-18 Identity = 76/267 (28.46%), Postives = 127/267 (47.57%), Query Frame = 1 Query: 1099 FEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLLLLAREAERACGVIRCDDLL-------DVRRSLLRLYQP--------PAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMT-DVGVPDAVVNSPSGMAFLDRVGKPVYETLRTLCLNRGRQRMSLE-LQMQDWRTLQAYANTVD-----DAFQLQYGLGAGTQR------------YMSKWALTEVLGLMHRYLQIGLELQL-PSAHEWSGMFWYWDYVMTTKM 1794 F++ +NR LLG++P V F P + + R CD LL ++R L + P S +++ T ++ RS+ + LY D++LG++ + +A M GVP +V++ G +FL R+GKP+Y+TL+ L LNR RQR ++ L M++W LQ A VD D ++ Y++ + L + LM +L IG+EL L H+ S +WYWD++++T++ Sbjct: 57 FDSNVNRRLLGNAPVRKVQFL-----SPLNTIQSLRNTLHEIDYAVCDLLLLEHHTLSRIQRQLSSISSPVNSSVVKGDGSSSSNNTINTINILGRSLIVLNLYFDDLLLGQYVLSDIIASHMKHSAGVPHELVDAEYGKSFLHRLGKPLYDTLKVLTLNRNRQRAYMDALMMREWSALQREATAVDYYYREDVVEVXXXXXXXXXXXXXXXXXXXXTPYVTNYVLGIGVWLMEHHLGIGVELDLFCGEHDLSIAYWYWDFLLSTRL 318
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Match: A0A6U9WSR9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WSR9_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.390e-17 Identity = 71/248 (28.63%), Postives = 132/248 (53.23%), Query Frame = 1 Query: 1096 AFEAEMNRHLLGSSPQHHVHFRRGRAEGPRSLL--LLAREAERACGVIRCDDLLDVRRSLLRLYQPPAESKGGSSVGTASLFARSVAAVCLYRQDMVLGRFDVMWFVAEAMTDV-GVPDAVVNSPSGM-AFLDRVGKPVYETLRTLCLNRGRQRMSLELQMQDWRTLQAYANTVDDAFQLQYGLGAGTQRYMSKWALTEVLGLMHRYLQIGLELQLPSAHEWSGM-FWYWDYVMTTKMMAEGSLKESK 1824 AF++ +N L+G++P + FR E S+L ++ E C ++ + L R ++R S +A++ RS+A + LY + + G++ + + + + GVPD+V S +G+ AFL+R+ KPVY+TL+ L LN+ RQR +++ + DW L+ A VD Q +G + Y S + L + LM ++ +G++LQL E G+ FWY D++ ++ + +++++K Sbjct: 249 AFDSNVNCPLVGNAPLRKIVFRE--TEESISVLKKIIGELDEIVCTILLKANTLGRIRCMMRKL----------SATSANILTRSLAVLSLYFDEKIFGQYLLPDMIVSHLKQLSGVPDSVFTSTAGVPAFLNRLCKPVYDTLKVLALNQNRQRTYIDVMLGDWAALREEAYIVDVTHHQQGRVGQDLKPYFSLYVLCVTIDLMDNFVDLGVKLQLHCNEEELGVVFWYRDFLTSSLLSQVTTMRQTK 484 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10197.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10197.216.1 >prot_Ecto-sp13_S_contig10197.216.1 ID=prot_Ecto-sp13_S_contig10197.216.1|Name=mRNA_Ecto-sp13_S_contig10197.216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=733bp QIKCAERPRQTGGAGGGDSRSPGECILAHLESRTQLLRACLALRDAFTNKback to top mRNA from alignment at Ecto-sp13_S_contig10197:622..5530+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10197.216.1 ID=mRNA_Ecto-sp13_S_contig10197.216.1|Name=mRNA_Ecto-sp13_S_contig10197.216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10197:622..5530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10197:622..5530+ >mRNA_Ecto-sp13_S_contig10197.216.1 ID=mRNA_Ecto-sp13_S_contig10197.216.1|Name=mRNA_Ecto-sp13_S_contig10197.216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10197:622..5530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |