Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 376 |
| Hectar predicted targeting category | signal anchor |
| Exons | 2 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-01_001640.2 |
| Cds size | 267 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462513.6409142-UTR-Ecto-sp13_S_contig10192:609..654 | 1681462513.6409142-UTR-Ecto-sp13_S_contig10192:609..654 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10192 610..654 + |
| 1681462513.6695611-UTR-Ecto-sp13_S_contig10192:933..997 | 1681462513.6695611-UTR-Ecto-sp13_S_contig10192:933..997 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10192 934..997 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462513.6528003-CDS-Ecto-sp13_S_contig10192:654..662 | 1681462513.6528003-CDS-Ecto-sp13_S_contig10192:654..662 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10192 655..662 + |
| 1681462513.6613858-CDS-Ecto-sp13_S_contig10192:674..933 | 1681462513.6613858-CDS-Ecto-sp13_S_contig10192:674..933 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10192 675..933 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10192.213.1 >prot_Ecto-sp13_S_contig10192.213.1 ID=prot_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MPCSLSLSLSLSNVCCACVCWVLVWCLVLFLVYRSFDVGAVDGSKTNYSR
LIKRRFGSLFPRSVFLCWFCGCRVRSGFCAGKPMGAVH* back to topmRNA from alignment at Ecto-sp13_S_contig10192:610..997+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10192.213.1 ID=mRNA_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:610..997+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACATTTGTTGCGTTTCGTGCGGCACCCTGGTTATGCTCTTCGTATGCC
GTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATGTCT
GTTGTGCGTGCGTGTGTTGGGTGTTGGTGTGGTGTTTGGTGCTCTTCTTA
GTTTATCGTTCTTTCGATGTCGGAGCTGTTGATGGGAGCAAAACGAATTA
CTCAAGACTCATCAAGCGACGATTTGGTTCTTTGTTTCCTCGCTCTGTTT
TTCTCTGCTGGTTTTGCGGTTGTCGTGTTCGGTCGGGCTTTTGTGCGGGG
AAGCCAATGGGTGCGGTACACTAGGTGATGAACGACAGAGTGTGTGATCC
GGCTCAAGTATTGTACCGTGGTAGTTGTTTGAGGGAGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10192:610..997+ >mRNA_Ecto-sp13_S_contig10192.213.1 ID=mRNA_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:610..997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATGTCTGTTGTGC
GTGCGTGTGTTGGGTGTTGGTGTGGTGTTTGGTGCTCTTCTTAGTTTATC
GTTCTTTCGATGTCGGAGCTGTTGATGGGAGCAAAACGAATTACTCAAGA
CTCATCAAGCGACGATTTGGTTCTTTGTTTCCTCGCTCTGTTTTTCTCTG
CTGGTTTTGCGGTTGTCGTGTTCGGTCGGGCTTTTGTGCGGGGAAGCCAA
TGGGTGCGGTACACTAG back to top
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