mRNA_Ecto-sp13_S_contig101911.212.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: D8LI65_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI65_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 1.500e-23 Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171 EHLDARLTDLG EQCATLKAANHGIEKEAELVVVSPLTRAI+TAMLAIDQV Sbjct: 56 EHLDARLTDLGKEQCATLKAANHGIEKEAELVVVSPLTRAIETAMLAIDQV 106
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: D8LI64_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI64_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 2.220e-19 Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171 EHLDARLTDLG +QCATLKA HGIEKEA+LVVVSPL RAIQTA L IDQV Sbjct: 56 EHLDARLTDLGKQQCATLKATKHGIEKEAQLVVVSPLARAIQTATLTIDQV 106
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A835YRM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM9_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 8.340e-8 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 Query: 25 LDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171 +DARLTDLG EQC TL+ +E +L+VVSP++RAI TAM+A D+V Sbjct: 62 MDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKV 110
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A836CMC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC3_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.140e-6 Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 Query: 22 HLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171 HLDARLTDLG EQ L A E +L+VVSP++RA++TA +A +QV Sbjct: 66 HLDARLTDLGREQAQGLGATLGTTIDEIQLMVVSPMSRALETASIAFEQV 115
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A7S2RI44_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RI44_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 1.540e-5 Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1 Query: 10 RAQEHLDARLTDLGMEQCATLKAA----NHGIEKEAELVVVSPLTRAIQTAM 153 R +LDARLT+ G +QCA L AA + I AELVV SPLTR IQTAM Sbjct: 132 RCISNLDARLTNRGEKQCADLAAALQASSSSILDNAELVVTSPLTRCIQTAM 183
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A4D9DAJ2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAJ2_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5 Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1 Query: 25 LDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAID 165 LD LT LG+ QC LK + I+ +LVV+SPL RA+ TA LA D Sbjct: 107 LDPELTKLGVSQCLALKPSVEAIQSSIDLVVISPLRRALMTAALAFD 153
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A6T6L9S4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6L9S4_9RHOD) HSP 1 Score: 48.9 bits (115), Expect = 3.110e-5 Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQ 168 EH+DARLTDLG EQ ++L + G+ E L++VSPLTR +QTA LA + Sbjct: 75 EHVDARLTDLGREQASSL--SERGLVPE--LILVSPLTRTLQTATLAFPE 120
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A6S8KEJ6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8KEJ6_9STRA) HSP 1 Score: 48.1 bits (113), Expect = 6.810e-5 Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1 Query: 10 RAQEHLDARLTDLGMEQCATLKAAN---------HGIEKEAELVVVSPLTRAIQTAM 153 ++++++DARLT G+EQC TL AA H + EL+V SP+TR IQTA+ Sbjct: 109 KSRDNIDARLTPTGIEQCRTLAAAIKNAPEGSPLHDVLNTTELIVTSPVTRCIQTAL 165 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101911.212.1 >prot_Ecto-sp13_S_contig101911.212.1 ID=prot_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp LITRAQEHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAback to top mRNA from alignment at Ecto-sp13_S_contig101911:37..210- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig101911.212.1 ID=mRNA_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101911:37..210- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101911:37..210- >mRNA_Ecto-sp13_S_contig101911.212.1 ID=mRNA_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101911:37..210- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |