mRNA_Ecto-sp13_S_contig1018.205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: D7FI09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI09_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 3.730e-195 Identity = 267/276 (96.74%), Postives = 273/276 (98.91%), Query Frame = 1 Query: 1 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGP+GGERD ENAFKREFDRLDAGNGVVHIRD+PKLIQGVLGRDVRPWILDRILKMFEAKRDG+VTW+DLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQ+TESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLF GTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPR DLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALG+IL Sbjct: 39 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPRGGERDGENAFKREFDRLDAGNGVVHIRDMPKLIQGVLGRDVRPWILDRILKMFEAKRDGKVTWLDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQVTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFEGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRLDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGIIL 314
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A835ZLH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLH4_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.840e-56 Identity = 116/286 (40.56%), Postives = 156/286 (54.55%), Query Frame = 1 Query: 46 RSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPK------GGERDVENA------------------FKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKERE-MPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828 R+KPFLH +L++ +R+ + E++G RDV+ + + + IP L+ V + R W+ DR+ K E R GQV W L +V +A D S R MPEW++ +RK P + HG+ SCYQ D+G G P R++ +K GM TT DLF GTTK T+ VPGYGGFIPASK+N RA +HGDM+++R ++LRLF++HN GYTGH AACND G CG+ P TTSGAAALGL+L Sbjct: 99 RTKPFLHSTLHKESYRDINQEIEGFAAASVEAYRCAFLAAARDVQATSISLCGSSGXXXXXXXXXXXXXXSEGPMASPTIDVNQIPGLLVAVHSKPPR-WLADRLRKACEGDRSGQVRWDTFVAALARVLSTASKDGSLLVRTAMPEWVLISRKAHPTIQHGKRITSCYQHDVG--GAAPAQRQLTFKRGMRGTTQDLFEGTTKDTFHVPGYGGFIPASKVNARAMQHGDMQDARAYSANLRLFHKHNMAGYTGHQGHAACNDRGELLCGTHPATTSGAAALGLLL 381
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A7R9UFG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFG0_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.250e-36 Identity = 101/277 (36.46%), Postives = 137/277 (49.46%), Query Frame = 1 Query: 1 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNF-SDEVDGLDGGEGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828 RRGVSA F + K F+ ++Y DF + +D V D P AF++ F G G + +PK++ LG I + F R G V+W D + L ++ E+A + S +PEWLV + K +P V G +SCYQ DMG E P+ + YK GM ST+ DL GTTK TY +PGY GFIP S+ N A + K +R R + + GYTGH P+ ND GP CG +PLTT+GA A +L Sbjct: 72 RRGVSAL-FEESNKALPKRFMGSTVYRSDFIDLRADLVKLQDACRSPA--------AFQKAFFHYSRG-GELDTMLLPKVLDMALGERASEGIKSKFAAAFSKSRAGFVSWDDFRQKLGQILEAAVKEGSSGGVSVPEWLVLSSKPIPKVIVGPALKSCYQCDMGLRNENPQTKPYTYKAGMYSTSYDLLRGTTKDTYHLPGYDGFIPESRRNSFAITQVNAKRTRASRERIAENVKPAVSGYTGHIPSNLINDRGPPLCGLNPLTTTGAGARHWML 338
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A7S2FHF5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHF5_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.630e-32 Identity = 69/148 (46.62%), Postives = 89/148 (60.14%), Query Frame = 1 Query: 385 SYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828 +Y+ +PEW+ A++ + V Q S YQ DMG E P DR KTGM+ TT DL GTTKATY +PG+ G IP ++ N R HGD + S LRL++RHN PGYTG P A ND G G++P T+SGA+ALGL + Sbjct: 114 TYQGATVPEWVTASKAITEDVVPRQPVRSSYQTDMGMANEKPLDRPYISKTGMAGTTQDLCAGTTKATYHIPGFSGHIPTTQRNPRVVAHGDGQKVHDMPSHLRLYHRHNMPGYTGFRPTNAKNDKGERHSGANPATSSGASALGLYV 261
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A485KW59_9STRA (Aste57867_12656 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW59_9STRA) HSP 1 Score: 124 bits (310), Expect = 9.250e-29 Identity = 90/259 (34.75%), Postives = 131/259 (50.58%), Query Frame = 1 Query: 49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL------DAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 S+ FL SLY+ DF NF D+ G + E +E A++ FD L + G+ + D+ L++ V G+ +LD MF+ DG V+W Q+ + +++ + WL + V+P T S +Q+D G G P R +T GM+STT DLF GTTKAT+ +P Y GFIP +K N A GD + R DLRL++ +N PGYTGH P + N G ++ G+D TT+G Sbjct: 86 SRTFLGQSLYQSDFLNFQDQ--------GRRIAEIPLE-AYEAAFDDLAQGTNQEGGSKKIARDDVKHLLRKVYGKAPTSRVLDIYTHMFDTCPDGFVSWEIFQEAVLRLSSFLLHETVKTTPGQAGWLDFVQHVIPNGT----PSSSHQVDFGVYGSEPIGRPYVSRTHGMASTTSDLFDGTTKATFHIPRYQGFIPQTKFNPTAVVQGDAERGRTKAEDLRLYHLNNVPGYTGHKPVDSKNVRGEAKTGTDIRTTNG 331
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A6G0XRS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRS2_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.310e-28 Identity = 91/261 (34.87%), Postives = 131/261 (50.19%), Query Frame = 1 Query: 49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL------DAGNGVVHIR--DIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 S+ FL SLY+ DF NF +E G + E +E AF+ FD L ++ + V I D+ +L+Q V G+ IL+ MF+ DG VTW Q+ +++ W+ +KV+P T S +Q+D G G P R ++ GM+STT DLF G+TKA+Y +P Y GFIP +K N A G+ + R DLRL++ +N PGYTGH P + N G ++ G D TT+G Sbjct: 85 SRTFLGQSLYQRDFANFHEE--------GKRIAELSME-AFQAAFDSLAEEPNQESPDAVKKINRDDVGELLQAVYGKPPATRILEIYAHMFDVCPDGFVTWEVFQEATLRLSSFLLHQTIKPSSHSIGWVDFVKKVLPNGT----PSSSHQIDYGTYGSDPLARPYMNRSHGMASTTSDLFDGSTKASYHIPRYQGFIPHTKCNPTAVSQGECEKPRPKAEDLRLYHSNNIPGYTGHKPVDSKNVRGEAKTGCDVRTTNG 332
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A1V9ZS18_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS18_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.210e-27 Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 1 Query: 52 KPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL-DAGNGVVHI-RDIPK-LIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 K FL SLYE DF +F ++ L E P+ +KR FD L +AG + RD+ K L+ V G +LD MF+ DG +TW ++ L ++ S+ + K P W+ ++ R+++P G + S +Q+D G G P R +T GM+STT DL GTTK T+ +P YGGF+P + N A GD R +DLRL++ +N PGYTGH P + N G + G+D TT+G Sbjct: 84 KKFLGQSLYETDFVHFQNQGKALL--EMPR-------EEYKRAFDALAEAGGQEPRLSRDLVKELLTAVYGTPPSARMLDIYAHMFDPIADGYITWPVFEEALERLTLFV-SNATSKLHGKPSWMEYLSLRRLLP----GTMPSSSHQIDYGTYGSDPLARPYLGRTKGMASTTSDLADGTTKNTFHIPRYGGFMPEAPHNPTAVAQGDCPQPRSKGADLRLYHLNNIPGYTGHKPVDSKNVRGEAATGTDQRTTNG 326
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A024U6R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6R1_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.320e-26 Identity = 91/270 (33.70%), Postives = 131/270 (48.52%), Query Frame = 1 Query: 49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVE---NAFKREFDRL------------DAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 S+ FL +LY+HDF NF +E G R A+ FD L D + D+ ++ V G+ ILD MF+A DG ++W Q+ + +++ S + K WL VA + V+ HG S +Q+D G G P R +T GM+STT D+F GT+KAT+ +P Y GFIP +K N A GD ++ R DLRL++ +N PGYTGH P + N G ++ G+D TT+G Sbjct: 88 SRTFLGQTLYQHDFLNFHEE------------GRRIAALPMAAYAAAFDELTHVPNQDSTSDADPKQKKIARDDVKAVLCAVYGKPPTARILDIYAHMFDACPDGFISWEIFQEAVCRLS-SLLLHQTVKVSGQAGWLEFVAAKHVL----HGGTPASSHQIDFGTYGGNPLARPYVGRTNGMASTTADMFDGTSKATFHIPRYQGFIPHTKYNPTAVAQGDCEHVRGKSEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDGRTTNG 340
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: W4FY68_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY68_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.420e-24 Identity = 90/272 (33.09%), Postives = 135/272 (49.63%), Query Frame = 1 Query: 49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVE---NAFKREFDRL---------DAGNGVVHIR-----DIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 S+ FL +LY++DF NF DE G R + FD+L + + + ++ D+ L++ V G+ IL+ MF+A DG ++W Q+ + ++A S + K W VA ++++P G S +Q+D G G P R +T GM+STT DLF GTTKAT+ +P Y GFIP +K N A GD + +R DLRL++ +N PGYTGH P + N G ++ G+D TT+G Sbjct: 88 SRTFLGQTLYQNDFLNFQDE------------GRRIAALPAAVYAASFDQLATVPNQDPTPSDSDLFKLKRLARDDVKTLLRQVYGKPPTSRILEIYAHMFDACPDGFISWDVFQEAVARLA-SFLLHQTIKISGQAGWFDFVAAKQMLP----GGTPASSHQLDFGTYGSEPLARPYIGRTNGMASTTTDLFDGTTKATFHIPRYQGFIPQTKYNPTAVAQGDGEQTRGKEEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDSRTTNG 342
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A6A5B0E1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0E1_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.130e-24 Identity = 93/272 (34.19%), Postives = 136/272 (50.00%), Query Frame = 1 Query: 49 SKPFLHDSLYEHDFRNFSDE---VDGLDGG--------------EGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804 S+ FL +LY++DF NF DE + L + P + D+ FK + RL A + V L++ V G+ IL+ MF+A DG ++W Q+ + ++A S + K W VA ++++P G S +Q+D G G P R +T GM+STT DLF GTTKAT+ +P Y GFIP +K N A GD + +R DLRL++ +N PGYTGH P + N G ++ G+D TT+G Sbjct: 88 SRTFLGQTLYQNDFLNFQDEGRRIAALPAAVYAASFDQLATVPNQDPTPSDSDL---FKLK--RL-ARDDVXXXXXXXTLLRQVYGKPPTSRILEIYAHMFDACPDGFISWDVFQEAVARLA-SFLLHQTIKISGQAGWFDFVAAKQMLP----GGTPASSHQLDFGTYGSEPLVRPYIGRTNGMASTTTDLFDGTTKATFHIPRYQGFIPQTKYNPTAVAQGDGEQTRGTEEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKSGTDSRTTNG 348 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1018.205.1 >prot_Ecto-sp13_S_contig1018.205.1 ID=prot_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp MFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAback to top mRNA from alignment at Ecto-sp13_S_contig1018:425..3404+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1018.205.1 ID=mRNA_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1018:425..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1018:425..3404+ >mRNA_Ecto-sp13_S_contig1018.205.1 ID=mRNA_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1018:425..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |