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Homology
BLAST of mRNA_Ecto-sp13_S_contig10175.204.1 vs. uniprot
Match: A0A6H5KN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN97_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.560e-47 Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 3 Query: 9 GSAREKCMSINARAREQPNGGLVLQAAVPDDDASEALGGGLRKHKGTRNAGKSPGGWNNFSKRRDKKPDKKRKKSMPRPASAPPANTAAA 278
GSAREKCMSINARAREQPNGGLVLQAAVPDDDA+EALGGGLRKHKGTRNAGKSP GWNNFSKRRDKKPDKKRKKSMPRPASAPPANTAAA
Sbjct: 476 GSAREKCMSINARAREQPNGGLVLQAAVPDDDATEALGGGLRKHKGTRNAGKSPDGWNNFSKRRDKKPDKKRKKSMPRPASAPPANTAAA 565
BLAST of mRNA_Ecto-sp13_S_contig10175.204.1 vs. uniprot
Match: D8LHJ6_ECTSI (tRNA (Guanine-n(7)-)-methyltransferase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ6_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.890e-28 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 3 Query: 3 EAGSAREKCMSINARAREQPNGGLVLQAAVPDDDASEALGGGLRKHKGTRNAGKSPGGWNNFSK 194
E GSAREKCMSINARAREQPNGGLVLQAAVPD+DA+EALGGGLRKHKGTR+AGKSP GWNNFSK
Sbjct: 394 ETGSAREKCMSINARAREQPNGGLVLQAAVPDEDATEALGGGLRKHKGTRSAGKSPDGWNNFSK 457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10175.204.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| A0A6H5KN97_9PHAE | 2.560e-47 | 97.78 | Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... | [more] |
| D8LHJ6_ECTSI | 1.890e-28 | 92.19 | tRNA (Guanine-n(7)-)-methyltransferase complex sub... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 105.5 |
| Seed ortholog evalue | 1.2e-20 |
| Seed eggNOG ortholog | 2880.D8LHJ6 |
| Preferred name | TRM82 |
| Model size | 642 |
| KEGG rclass | RC00367,RC00942 |
| KEGG ko | ko:K01968,ko:K15443 |
| KEGG Reaction | R04138 |
| KEGG Pathway | ko00280,ko01100,map00280,map01100 |
| KEGG Module | M00036 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0001510,GO:0001673,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030488,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0071704,GO:0090304,GO:0106004,GO:1901360,GO:1902494,GO:1990234 |
| Exons | 3 |
| EggNOG free text desc. | RNA (guanine-N7)-methylation |
| EggNOG OGs | KOG3914@1,KOG3914@2759 |
| EC | 6.4.1.4 |
| Cds size | 252 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03016 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462512.9624794-UTR-Ecto-sp13_S_contig10175:3803..4164 | 1681462512.9624794-UTR-Ecto-sp13_S_contig10175:3803..4164 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10175 3804..4164 - |
| 1681462513.0035877-UTR-Ecto-sp13_S_contig10175:5938..5967 | 1681462513.0035877-UTR-Ecto-sp13_S_contig10175:5938..5967 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10175 5939..5967 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462512.9741771-CDS-Ecto-sp13_S_contig10175:4164..4249 | 1681462512.9741771-CDS-Ecto-sp13_S_contig10175:4164..4249 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10175 4165..4249 - |
| 1681462512.984062-CDS-Ecto-sp13_S_contig10175:5036..5172 | 1681462512.984062-CDS-Ecto-sp13_S_contig10175:5036..5172 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10175 5037..5172 - |
| 1681462512.994026-CDS-Ecto-sp13_S_contig10175:5907..5938 | 1681462512.994026-CDS-Ecto-sp13_S_contig10175:5907..5938 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10175 5908..5938 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10175.204.1 >prot_Ecto-sp13_S_contig10175.204.1 ID=prot_Ecto-sp13_S_contig10175.204.1|Name=mRNA_Ecto-sp13_S_contig10175.204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MSINARAREQPNGGLVLQAAVPDDDASEALGGGLRKHKGTRNAGKSPGGW
NNFSKRRDKKPDKKRKKSMPRPASAPPANTAAA* back to topmRNA from alignment at Ecto-sp13_S_contig10175:3804..5967- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10175.204.1 ID=mRNA_Ecto-sp13_S_contig10175.204.1|Name=mRNA_Ecto-sp13_S_contig10175.204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10175:3804..5967- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAGGCCGGTAGCGCCAGGGAGAAGTGCATGAGCATCAACGCCCGGGCG
AGAGAACAACGTGCGTGCTGCTTCTTGTGTTGGCTCGGTAGAAGGCTCCT
ATTGTGTGTGGGTGTGTGTGTGTGTTCTGCTACAGACCGACCGACCGACC
GACCGCTGTTGTTACTACGAACTGCTGTTCTTTATGGCTTGGAGTTCCCA
CAAAGAAAAAGGGGATCGTTCTTGATAGTAGAAGCATGAAATAGGCTCTC
GGGGTGGCTTCGGCAGGCCCAGCCTCGAGATCTTCGTCGCTGGACGACAT
AGGTCCCGACGATATCGTTGATTTTTGTGTGTGGCTGTTTGGCTCGCGGT
GCTGTTGAACCCGGGTGTCGTTGTTGTCAGTCCCGGGGGCGCCATACCCT
TGGGCACACGGCATGTGCATGCACCTCTTGGTGATGCGTGTGCTCTCGTG
TATTGGACCGACACGATGTCTTGTTTCGCCCCAAGCCCGCCGGCGTCCTT
GCAGTCTCGCGTTCCCGGTGCCATATTTTCGCTCTCCCACGGCGTTGGGT
TCGTCCCCAACTGTTGTTGCTCAACCCATTCATGTTTCCTAGCTATCCTG
TGACGCACGGTTCTCAATCTTAATATTTTTTTTCCATTATCGTTTGAGTT
TTCGATCTCTCTTTTCCTTCTCCGGTTTCATGTCGTATGATATCTTGCCG
TGGTGTTTTTCGATCATGTCCAACATATGGTCACTCAGATTCTGTTTATT
TATTTATTTATTTTTTTCTTGTACCAAAAAACGGAAACGAAACAGCTAAC
GGCGGTTTGGTCCTGCAAGCGGCGGTGCCCGACGACGACGCCTCGGAAGC
GCTGGGAGGGGGGCTGCGAAAGCACAAGGGGACCAGAAACGCTGGCAAGA
GCCCGGGTGGGTGGAACAACTTCAGCAAGAGGTGGGTTCCGACCGCGAAA
CGCTTGTCGCTTGACTCCAAAGCCATTATTTTGGTCCGTGCTCGTGTGTT
TTGTCTTCTACTTGGCTATTGAGCTTTGGAATTGTGTTGTGTGGTGCCTG
CGTTATGCCCAGGTGTCGCCTTTGGTTTCTTTCTGAGTGTTGTAGATGTT
TCCGTCTGCGTGTGTGGCGCCCTACTTGTTTGTTTTGCTTGGCGAAAGCA
TGCGTATCGTTTGTATTCCCTCGTGTTTGCGGGCTGTATTTACGATAGAC
ATCAGTGTTGGCGTGCGGACGGGAGGGGCTGTGCCCTGTACAACTATGCG
ATCGCAACATTCAGATAGCCCTTTGTTTCTACCACGCATATCGCGTGCAC
CAACTGGTAGATATTGGACAGCACACGGAAGATTAGGAGTGTAGCCGCAA
CAGAGGGCATCATCACTGCCTAGGCTGTTTTCACGTGTGACATCGAACCA
ACTGTACAGAACTTGTTGGGTTTCTCGTTATTCCACACCAAATTCGCTGA
GATCAATTTTCGAAATTTCGGTCGTAGTTCGTTTTTTTGGTCGATAAGCG
ACGGAGGTTCGATTTCACACTTGTTTTAATCCCGTCCTTTGCGTCCAGCC
CCGGCTTCCCACTCCCCCCGTTCGCCCATACTCCCTCGTGGCCCCTTGAC
AACAACTTCATTTCCCGTTGTCCCTCCTTTTTTGTTTTCCCCGTTTGTAT
TGCGCGGTTCGCGGTATGCCCACAACGAACATCTCCCAATCAATCAATCA
TCACCACCACCGAACCAGGAGGGACAAGAAGCCGGACAAGAAGAGGAAGA
AGTCGATGCCGAGGCCGGCATCGGCGCCGCCGGCCAATACCGCCGCGGCG
TAGAACAGTCGTCGTTTTTTTGCCGGTGCTGAGTGCTGTCCAATGCGTCG
TTTTCTTTGGTGGAACACGCATGGCGACTTACTCTGTTGCATGGACGGTG
TTGTTGCCGTGCTTGGAAGCAATGGTGCGAAATCATGCGAAACAGGCTTC
TATCACGAGGGGGAGTCTGACTAAGCGGTGTCGTAAGGCATGATATTACG
TGCGTCACAGCTCTTGTTGTCCTGTTTGCGGCTTGACTGCTGCGCTGTTG
CCTGCGCCGGCGAGCGCTCGTTGTGGGGCAGGTGGGAGCGGGAGGCCTTG
TTATCTCGGCCAGGATGCAGCAACAGCAGCAGATAGTTCAAGTTTTTTTT
TGGCAACATTGTGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10175:3804..5967- >mRNA_Ecto-sp13_S_contig10175.204.1 ID=mRNA_Ecto-sp13_S_contig10175.204.1|Name=mRNA_Ecto-sp13_S_contig10175.204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10175:3804..5967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCATCAACGCCCGGGCGAGAGAACAACCTAACGGCGGTTTGGTCCT
GCAAGCGGCGGTGCCCGACGACGACGCCTCGGAAGCGCTGGGAGGGGGGC
TGCGAAAGCACAAGGGGACCAGAAACGCTGGCAAGAGCCCGGGTGGGTGG
AACAACTTCAGCAAGAGGAGGGACAAGAAGCCGGACAAGAAGAGGAAGAA
GTCGATGCCGAGGCCGGCATCGGCGCCGCCGGCCAATACCGCCGCGGCGT
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