mRNA_Ecto-sp13_S_contig10172.202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D8LCE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE6_ECTSI) HSP 1 Score: 315 bits (806), Expect = 1.120e-105 Identity = 158/191 (82.72%), Postives = 167/191 (87.43%), Query Frame = 1 Query: 1 MRAWTLMLACVLPLVLAHGTEDDP-ITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFTNDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKRGGCRAAGCVAAAVEGELTAQDSINV------DRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
MRAWTL+LACVLPLVLAHGTED+P ITPE DCCAA LVEGEEGSLDAAGKYRLPAICRGVPSPV C L FTND +++EEPAWLLAY SQADIRQHPSCSPVEWEQRCPPGATMLLS+KRGGC AAGCVAA TAQ+S+NV D AILRAVTGQVTARLRAEKP+LP SFYWHVRGLRRAFDK
Sbjct: 1 MRAWTLVLACVLPLVLAHGTEDNPTITPEGDCCAALLVEGEEGSLDAAGKYRLPAICRGVPSPVTCTPLGFTNDHNMVEEPAWLLAYRSQADIRQHPSCSPVEWEQRCPPGATMLLSKKRGGCPAAGCVAA------TAQESVNVGQDVGDDAAILRAVTGQVTARLRAEKPDLPRSFYWHVRGLRRAFDK 185
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI) HSP 1 Score: 189 bits (481), Expect = 2.360e-52 Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1 Query: 1 MRAWTLMLACVLPLVL--AHGTEDDPITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSP-VACPQLTFTNDG---SIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKRGGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPN 498
MR+WTL+L C + LVL AHG DP T E+DCC A LVEGEEGSLDAAGKY LP ICRG P+P +ACPQL F + + I EPA LA++ Q+D+R SCSP+EWEQRCPPGATMLLS+KRGGCRAAGCVAAA+EGELTAQ I+VD + T ++T +++ P+
Sbjct: 2 MRSWTLLLVCAVLLVLGQAHGKGRDP-TKEEDCCTALLVEGEEGSLDAAGKYVLPTICRGEPAPAMACPQLWFQSPAISDNDIGEPA-RLAFQQQSDLRADESCSPLEWEQRCPPGATMLLSKKRGGCRAAGCVAAAMEGELTAQ-LIDVDE---KRFTRKLTKAMKSSPPS 167
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE) HSP 1 Score: 187 bits (474), Expect = 1.530e-51 Identity = 113/194 (58.25%), Postives = 130/194 (67.01%), Query Frame = 1 Query: 1 MRAWTLMLACVLPLVLAHGTE-DDPI--TPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFT-----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDKV 555
MRAW L+L VL AHG + P TPE CCAA LVEGE GSLDA GKYRLP C G + VACP+L F NDGS+ +W LA+ QAD+R PSCSP+EWE+RCPPGATMLL++KR GGCRAAGCVA V GEL + N D ILRAVT Q TA L+A KP +P SFY HV G +RA+ K
Sbjct: 1 MRAWMLLLLSVLLTFGAHGMAINGPANATPEDKCCAALLVEGEAGSLDAFGKYRLPTPCGGELA-VACPKLGFNAATLHNDGSMTA--SW-LAFRQQADLRLAPSCSPMEWEKRCPPGATMLLAEKRRGGCRAAGCVA--VGGEL---NDDNDDNEILRAVTAQQTALLKAAKPAMPKSFYQHVAGRQRAYGKA 185
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI) HSP 1 Score: 164 bits (416), Expect = 1.210e-43 Identity = 98/177 (55.37%), Postives = 115/177 (64.97%), Query Frame = 1 Query: 49 AHG----TEDDPITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFT----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
AHG + ITP+ CC+A LVEGE GSLD GKYRLP C G + VACP+L F NDGS+ P+W LA+ QAD+R PSC VEWE+RCPPGATMLL++KR GGCRAAGCVA V GE + ILRAVT Q TA L+A KP P +FY HV G +RA+ K
Sbjct: 7 AHGKGINAPANAITPQDKCCSALLVEGEAGSLDDFGKYRLPPPCGGELA-VACPRLGFNSAAMNDGSMT--PSW-LAFRQQADLRLAPSCPRVEWEKRCPPGATMLLAEKRRGGCRAAGCVA--VGGEPNDNKEEQDESEILRAVTAQQTALLQAAKPATPKTFYQHVVGQQRAYGK 177
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5JIA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 4.090e-26 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1 Query: 1 MRAWTLMLACVLPLVLAHGTEDDPI-TPEQDCCAAFLVEGEEGSLDAAGKYRLPAI 165
MRAW+L+LACVLPLVLAHGTEDDPI TPE DCCAA LVEGEEGSLDAAGKYRLP I
Sbjct: 1 MRAWSLILACVLPLVLAHGTEDDPINTPEGDCCAALLVEGEEGSLDAAGKYRLPPI 56
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5KGK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK1_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.970e-25 Identity = 69/150 (46.00%), Postives = 87/150 (58.00%), Query Frame = 1 Query: 187 VACPQLTFTNDGSIIEEP---AWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELT---------------------AQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDKVGG 561
VACP+L F N +I ++ +W LA++ Q+ +R SC P EWE RCPPGATMLL +KR GGCRAAGC+AA GEL Q++ + + ILRAVT Q TA L+A KP LP +FY HV G +RA V G
Sbjct: 12 VACPKLGF-NAAAIHDDAMTASW-LAFQQQSGLRAAESCPPTEWEDRCPPGATMLLVEKRRGGCRAAGCIAAG--GELNDVRDGSAFPLAVLVCYALVDHGQNNEDDEWEILRAVTAQQTALLQAAKPTLPKTFYQHVAGQQRACGXVSG 157
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI) HSP 1 Score: 110 bits (276), Expect = 2.120e-24 Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 163 ICRGVPSPVACPQLTFT----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
I G S VACP+L F ND ++ +W LA++ Q+ +R SC P EWE RCPPGA MLL++KR GGCRAAGCVA V GEL ++ + + ILR VT Q TA L+A KP +P +FY HV G +RA+ K
Sbjct: 4 IYSGGESAVACPKLGFNAAAINDDAMTA--SW-LAFQQQSGLRAAESCPPAEWEDRCPPGAIMLLAEKRRGGCRAAGCVA--VGGELN-DNNKDDEWEILRVVTAQQTALLQAAKPTMPKTFYQHVAGQQRAYAK 132
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5JU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU04_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 5.240e-13 Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 187 VACPQLTFTNDGSIIEEP---AWLLAYESQADI---RQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVE 399
VACP+L F N +I ++ +W LA++ Q+ + R SC P EWE RCPPGATMLL++KR GGCRAAGC+AA E
Sbjct: 12 VACPKLGF-NAAAIHDDAMTASW-LAFQQQSGLFGLRAAESCPPTEWEDRCPPGATMLLAEKRRGGCRAAGCIAAGGE 87 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10172.202.1 >prot_Ecto-sp13_S_contig10172.202.1 ID=prot_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp MRAWTLMLACVLPLVLAHGTEDDPITPEQDCCAAFLVEGEEGSLDAAGKYback to top mRNA from alignment at Ecto-sp13_S_contig10172:467..2000- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10172.202.1 ID=mRNA_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10172:467..2000- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10172:467..2000- >mRNA_Ecto-sp13_S_contig10172.202.1 ID=mRNA_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10172:467..2000- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |