mRNA_Ecto-sp13_S_contig10170.200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: D8LHN4_ECTSI (GFO_IDH_MocA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHN4_ECTSI) HSP 1 Score: 303 bits (775), Expect = 1.170e-93 Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 2 Query: 698 RGTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDIVPVEF 1144 +GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLD NGRPF+ITYGGEDKHIPTDIVPVEF Sbjct: 309 KGTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDGNGRPFEITYGGEDKHIPTDIVPVEF 457
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A836CB20_9STRA (GFO_IDH_MocA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB20_9STRA) HSP 1 Score: 236 bits (601), Expect = 3.590e-68 Identity = 113/145 (77.93%), Postives = 125/145 (86.21%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDIVP 1135 GTAVYTSSW APK+DVHSQQRFFYMGQKGEI VDQAHRGYTV+ DGDGF+SVNPLFMKYTP++GYFSGQ+GYGYRSFEAFVDAVR I A PE FD LATIGTT+LTTAILEAGRLSLD + RP+++ Y G DK IPT + P Sbjct: 290 GTAVYTSSWAAPKSDVHSQQRFFYMGQKGEITVDQAHRGYTVSTDGDGFKSVNPLFMKYTPSNGYFSGQSGYGYRSFEAFVDAVRDINACKKVPEDFDHTLATIGTTFLTTAILEAGRLSLDNDSRPYNVLYEGADKEIPTRLRP 434
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S3Y1C1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1C1_HETAK) HSP 1 Score: 223 bits (568), Expect = 1.730e-63 Identity = 111/146 (76.03%), Postives = 119/146 (81.51%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGED-KHIPTDIVP 1135 G VYTSSWVAPK+DVHSQQRFFYMGQKGEINVDQAHRGY +A D GFRSVNPLFMKYTPT+G FSGQTGYGY+SFEAFVDAVRQI AG TP FD+ LATI T+LTTAILEAGRLSLD GR I YG H+PT +VP Sbjct: 273 GHGVYTSSWVAPKSDVHSQQRFFYMGQKGEINVDQAHRGYNMADDSGGFRSVNPLFMKYTPTNGEFSGQTGYGYKSFEAFVDAVRQINAGEKTPADFDASLATIDETFLTTAILEAGRLSLDCGGRAVAIEYGDTSCPHVPTAVVP 418
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S2V009_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V009_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.840e-60 Identity = 104/147 (70.75%), Postives = 114/147 (77.55%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGG-EDKHIPTDIVPV 1138 G A+YTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGY +A D +G+RSVNPLFMKYTPTDG FSGQ GYG RS F+ A + I G E FD+ L TIGTTYLTTAILEAGRLSLD G F+I Y E+ HIPT I P+ Sbjct: 21 GHALYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYNMADDAEGYRSVNPLFMKYTPTDGKFSGQNGYGCRSIAEFIKAAQSITDGDKKAEDFDASLPTIGTTYLTTAILEAGRLSLDNGGHQFEIKYEDTENPHIPTSIEPL 167
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A4D9CYF7_9STRA (GFO_IDH_MocA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYF7_9STRA) HSP 1 Score: 214 bits (545), Expect = 4.680e-60 Identity = 112/164 (68.29%), Postives = 124/164 (75.61%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKD---GDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYG------------GEDKH-IPTDIVPVEF 1144 GT +YTSSWVAPK+DVHSQQRFFYMG GE+NVDQAHRGYT+A D G GF+SVNPLFMKYTPTDG F+GQ GYGY SFEAFVDAV I++G A+ FD+ LATIGTT LTTAILEAGR SLDA GRP +I YG GE+ H P DI PVEF Sbjct: 267 GTGLYTSSWVAPKSDVHSQQRFFYMGHGGEVNVDQAHRGYTLASDELGGGGFKSVNPLFMKYTPTDGRFAGQRGYGYLSFEAFVDAVVDIQSGKASVGDFDASLATIGTTALTTAILEAGRRSLDAGGRPMEIVYGEEADRAWSAPEGGEENHPFPIDIRPVEF 430
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S1XWL6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWL6_9STRA) HSP 1 Score: 211 bits (538), Expect = 9.930e-59 Identity = 107/151 (70.86%), Postives = 115/151 (76.16%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGE---DKHIPTDIVPVEF 1144 GTAVYTS+W+AP+ADVHSQQRFFYMG KGEINVDQAHRGYT+AKDG+ F SVNPLFMKYTPT G FSGQ GYGYRSFE FVDA +I A FD L TI TYLTT ILEAGRLSLDA+ RP ITY G D H+P I P EF Sbjct: 309 GTAVYTSAWIAPRADVHSQQRFFYMGTKGEINVDQAHRGYTMAKDGNPFGSVNPLFMKYTPTRGKFSGQRGYGYRSFEVFVDACNEINTQGAPVRGFDESLPTIHATYLTTTILEAGRLSLDADSRPMVITYKGATGADAHMPVSITPKEF 459
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S2WUR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUR1_9STRA) HSP 1 Score: 207 bits (527), Expect = 3.060e-57 Identity = 99/143 (69.23%), Postives = 113/143 (79.02%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDI 1129 G AVYTSSWVAPK+DVHSQQRFFYMGQ+GEINVDQAHRGY ++ DGDG+RS+NPLFMKYTPTDG FSGQ GYGY SFE F+DA I A+ E+FDS L TIG T+ TTAILEAGRLSLD+ G+ I Y D H+P + Sbjct: 304 GHAVYTSSWVAPKSDVHSQQRFFYMGQRGEINVDQAHRGYNMSADGDGYRSINPLFMKYTPTDGMFSGQNGYGYVSFEKFLDAATAINQRKASVESFDSSLPTIGVTFATTAILEAGRLSLDSGGKSVAIHYDTPDSHVPARL 446
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: K0R481_THAOC (GFO_IDH_MocA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R481_THAOC) HSP 1 Score: 200 bits (508), Expect = 1.600e-55 Identity = 105/149 (70.47%), Postives = 113/149 (75.84%), Query Frame = 2 Query: 701 GTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDS-KLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDIVPVEF 1144 G AVYTSSWVAPK+DVHSQQRFF MG GEINVDQAHRG TVA DG F SVNPLFMKYTPT+G FSGQ YG +SFE FVDA RQI AG T + FD LAT+GTT TAILEAGR SLDA+ RP DI YG +D + P DI P EF Sbjct: 208 GCAVYTSSWVAPKSDVHSQQRFFLMGTNGEINVDQAHRGMTVACDGKPFGSVNPLFMKYTPTNGKFSGQASYGVKSFECFVDACRQINAGAKTADAFDDGSLATVGTTCQGTAILEAGRRSLDADSRPMDIVYG-DDANTPVDIRPHEF 355
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S4GH22_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GH22_9EUGL) HSP 1 Score: 201 bits (510), Expect = 3.960e-55 Identity = 100/149 (67.11%), Postives = 113/149 (75.84%), Query Frame = 2 Query: 698 RGTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDSKLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDIVPVEF 1144 +GT +YTSSW APKADVHSQQRFFY+GQ GE+ VDQAHRGYT + DGD FRSVNPLFMKY P++G FSGQ+GYGYRSFEAF+DAV I AG AT +FD LA+I TT TTA+LEAGR SLDA GRP + Y G P I V F Sbjct: 267 QGTGIYTSSWSAPKADVHSQQRFFYLGQSGEVTVDQAHRGYTASADGDQFRSVNPLFMKYAPSNGKFSGQSGYGYRSFEAFIDAVADINAGRATAASFDYDLASIQTTAGTTAVLEAGRRSLDAGGRPMRLVYEGSGTE-PVGIEAVTF 414
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Match: A0A7S2U731_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U731_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.040e-54 Identity = 102/152 (67.11%), Postives = 110/152 (72.37%), Query Frame = 2 Query: 692 RKRGTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAKDGDGFRSVNPLFMKYTPTDGYFSGQTGYGYRSFEAFVDAVRQIEAGMATPETFDS-KLATIGTTYLTTAILEAGRLSLDANGRPFDITYGGEDKHIPTDIVPVEF 1144 R G AVYTSSWVAPK+DVHSQQRF YMG KGEINVDQAHRG TVA DG F SVNPLFMKYTPT+G FSGQ YG RSFE F+DA R AG A P FD LAT+ TT TAILEAGRLSLD +GRP DI Y + P+ I P +F Sbjct: 105 RSLGCAVYTSSWVAPKSDVHSQQRFMYMGTKGEINVDQAHRGCTVAVDGASFASVNPLFMKYTPTNGQFSGQGSYGVRSFELFIDACRACNAGTAKPNDFDDGSLATVHTTLQGTAILEAGRLSLDQDGRPMDIIYETDMSLEPSGIAPHQF 256 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10170.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10170.200.1 >prot_Ecto-sp13_S_contig10170.200.1 ID=prot_Ecto-sp13_S_contig10170.200.1|Name=mRNA_Ecto-sp13_S_contig10170.200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp MARLRKRGTAVYTSSWVAPKADVHSQQRFFYMGQKGEINVDQAHRGYTVAback to top mRNA from alignment at Ecto-sp13_S_contig10170:1608..4446- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10170.200.1 ID=mRNA_Ecto-sp13_S_contig10170.200.1|Name=mRNA_Ecto-sp13_S_contig10170.200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10170:1608..4446- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10170:1608..4446- >mRNA_Ecto-sp13_S_contig10170.200.1 ID=mRNA_Ecto-sp13_S_contig10170.200.1|Name=mRNA_Ecto-sp13_S_contig10170.200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10170:1608..4446- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |