mRNA_Ecto-sp13_S_contig1017.199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI) HSP 1 Score: 802 bits (2071), Expect = 2.650e-289 Identity = 421/481 (87.53%), Postives = 437/481 (90.85%), Query Frame = 1 Query: 1 METCNPPGFYVDPPAFDIELEEFGMLPICRLEAVRLLREGQTTPAQVSEASPAQKALTADAKLLLLHGHGDRPSEAKHRRADLASHFILKLACCGGKGGEVQAGTAASKRDDSGGRCEDVDRRSSRREWFVRAERDLFKARLHWHLQQNEGGGSKEGIMGRCNEAASSADLGARASIADRLEALRLFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSYAREGVSTSSFGGKGCGGXXXXXXXXXITGRRRRDGDDPFREHSRSSTPGACSSGEASHGTLERQLPPSSKRKKLPQSFAVKGGGDIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEYASKRNQLSAL 1443 METC PPG YVDPP FDIELEEFG LP+ RLEAVRLLREGQTTPAQV EASPAQKALTADA+LLLLHGHGDRPSEAK++RADLASHFILKLACCG GG VQ GT ASKRDDS GRCE+VDRRSSRREWFVRAERDLF+ARLHWHLQQNEGGGSKEGI GRCN ASSADLGARASIADRLEALR+FYNLEWLQPVGPAAPDCSRMEKQRESGHEGS+AREGV TSS+GGKGC XXXXXXXXX DGDDPFREHSRS +PGACS G+ASH TLERQLPPSS+RKKLP+S A KGG DI YLSCPFEKVLPLVRSRRVLLRDGKALLS DQLPEA+VQHFE RLREGLAIAERGL GVEAD RVA+VLRQVR AVDSLV GGGR G DADNRSMA ITR NIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFL NAGM+VDEILGLWREEFPKGMPADEYA KRNQLSAL Sbjct: 1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVPEASPAQKALTADARLLLLHGHGDRPSEAKNQRADLASHFILKLACCGATGGGVQPGTEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL 481
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A3Q2DE49_CYPVA (DNA primase large subunit n=3 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DE49_CYPVA) HSP 1 Score: 98.6 bits (244), Expect = 3.600e-18 Identity = 67/215 (31.16%), Postives = 109/215 (50.70%), Query Frame = 1 Query: 826 HGTLERQLPPSSKRKKLPQSFAVKGGG--DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDAD-NRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEYASKRNQLSAL*FGIR 1458 + T+ Q K K L S+ V G + ++ PF+ L LVR+R+V L+DG A + + + ++ F RL + LA+ R L V +D+R+ +L + + G+D +++ I+ ID LA K FPLCMR+ + LR HHL++ R+Q FL G+ +++ L WR EF +G + AD++ A +GIR Sbjct: 146 YNTISVQEKNQLKEKLLNSSYIVSGVTLENEDFYKVPFQDALDLVRARKVYLKDGYAFIPHNDIVTIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSIQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKFDK------AYAYGIR 345
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A3Q2Q406_FUNHE (DNA primase large subunit n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2Q406_FUNHE) HSP 1 Score: 97.8 bits (242), Expect = 6.410e-18 Identity = 60/199 (30.15%), Postives = 104/199 (52.26%), Query Frame = 1 Query: 826 HGTLERQLPPSSKRKKLPQSFAVKGGG-DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRD-ADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEY 1413 + T+ + K + L S V G + ++ PF+ L LVR+R+V L++G A + ++ ++ F RL + LA+ R L V +D+R+ +L + + G+D + +++ I+ ID LA K FPLCMR+ + LR HHL+Y R+Q FL G+ +++ L W+ EF +G + AD++ Sbjct: 147 YNTISGEEKEQLKNELLNSSHGVSGVSLEHDFYKVPFQDALDLVRTRKVYLKEGYAYIPQSEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------FGQDYSGQKNVGKISLEQIDSLAGKSFPLCMRQLHKALRENHHLRYGGRMQYGLFLKGIGLSLEQALQFWKMEFIQGKVDADKF 336
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: UPI0019042926 (eukaryotic and archaeal DNA primase, large subunit-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019042926) HSP 1 Score: 97.4 bits (241), Expect = 7.890e-18 Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = 1 Query: 862 KRKKLPQSFAVKGGGDI---EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413 KR+ + +F+++ D + P+ KV LV RRV L+ G A + I Q F+ RL L + R L ++ DDR+ ++ + L G HGR A +T + ID LA KHFPLCMR LR+ HLK+Q RLQ FL G+ +DE + WR + M D + Sbjct: 166 KRQLMDTTFSIRTEEDFAKENFYRVPWTKVTDLVAQRRVFLKRGHAYVPSTLQSSIIFQEFQARLANALELTARALPRLDEDDRLLPIITHFSQGF--LAGVAGEHGRSVGQYGDA-VTADMIDDLAWKHFPLCMRHVHGGLRQNRHLKHQGRLQYTLFLKVLGLPIDEAIHFWRASYGNTMSDDRF 349
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE) HSP 1 Score: 97.1 bits (240), Expect = 1.190e-17 Identity = 59/170 (34.71%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 913 EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRS---MATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413 ++ PF +VL LV++R+V L G A + D L ++ + L LAI R L +E D R+ +L + + G D N+ + +T + ID L++ FPLCMR LR+ HHLKY RLQ FL G+ +D+ L WREEF K M D++ Sbjct: 189 KFYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQRY---------IGTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKF 349
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP) HSP 1 Score: 97.1 bits (240), Expect = 1.220e-17 Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 1 Query: 913 EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMA---TITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413 ++ PF +VL L+++R+V L G A + + L +V + L LA+ R L +E D R+ +L + + G D N+ + IT + ID L++ FPLCMR LR+ HHLKY RLQ FL G+ +D+ L WREEF K M +D++ Sbjct: 190 KFYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQRY---------IGTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKF 350
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A067MHZ5_9AGAM (DNA primase large subunit n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MHZ5_9AGAM) HSP 1 Score: 96.7 bits (239), Expect = 1.320e-17 Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = 1 Query: 916 YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413 Y P+ +V LV +RRV L+ G A + L P I Q F+ L L + L ++ DDR+ +L + + + V G R G D +T + +D++A KHFP+CMR LR + HLK+ RLQ FL G+ V+E + WR+ + + M D++ Sbjct: 176 YYKVPWTQVPDLVATRRVYLKGGFAYVPLSLQPNIIYQKFQQNLERALEQTAKALPRLDEDDRLVPILEHLSKGFVAGVSGEYRAGEGID----GEVTADMVDEIARKHFPMCMRSLHETLRADRHLKHAGRLQFTLFLKAMGVSVEEAIVFWRKGYGQSMTDDKF 337
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: PRI2_ARATH (Probable DNA primase large subunit n=13 Tax=Brassicaceae TaxID=3700 RepID=PRI2_ARATH) HSP 1 Score: 95.5 bits (236), Expect = 2.670e-17 Identity = 61/171 (35.67%), Postives = 90/171 (52.63%), Query Frame = 1 Query: 907 DIE--YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413 D+E Y PFE+V LV SRRVLL+ G A ++ QL +V F L + L + R +R D L + A+ + G + + A I+ +IDQ+++ FPLCMR LR +HHLK+ R+QL FL G+K+D+ L WREEF K + ++ + Sbjct: 168 DVENIYYKVPFEEVPDLVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWT-TTIREREKDRLTPIVEALSTSYLGPDY----SQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLKGVGLKLDDALAFWREEFTKKVGSERF 333
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A165H454_9APHY (DNA primase large subunit n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165H454_9APHY) HSP 1 Score: 95.1 bits (235), Expect = 4.550e-17 Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 847 LPPSSKRKKLPQ------SFAVKGGGDIE-YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEF 1386 +P S + KK Q S A+K E Y + +V LV RRVLL+ G A + + + Q F+ RL + L + + L ++ D R+ +L + + + G A + S IT + ID LA KHFPLCMR LRREHHLK+ RLQ FL G+ +DE + WR F Sbjct: 159 IPVSDEEKKQYQHELAAASPALKDAALSERYYKVKWTRVPDLVEKRRVLLKGGMAYVPSREQSSIVFQEFQTRLTKALEMTAKALPRLDEDTRIVPILDNLSQG---FLAGVSSEWSTATSSSAGEITADMIDDLARKHFPLCMRNLHETLRREHHLKHFGRLQYGLFLKVLGLSIDEAITFWRRSF 342
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: UPI001FAD3DAF (DNA primase large subunit isoform X1 n=3 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD3DAF) HSP 1 Score: 95.1 bits (235), Expect = 5.290e-17 Identity = 59/188 (31.38%), Postives = 101/188 (53.72%), Query Frame = 1 Query: 862 KRKKLPQSFAVKGGG--DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDAD-NRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEY 1413 K K L S+ + G + ++ PF+ L LVR+R+V L++G A + +++ ++ F RL + LA+ R L V +D+R+ +L + + G+D +++ I+ ID LA K FPLCMR+ + LR HHL++ R+Q FL G+ +++ L WR EF +G + AD++ Sbjct: 184 KEKLLISSYGINGVTLEEQDFYKVPFQDALDLVRTRKVYLKEGYAYIPHNEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDNHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKF 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1017.199.1 >prot_Ecto-sp13_S_contig1017.199.1 ID=prot_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=482bp METCNPPGFYVDPPAFDIELEEFGMLPICRLEAVRLLREGQTTPAQVSEAback to top mRNA from alignment at Ecto-sp13_S_contig1017:15209..18174- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1017.199.1 ID=mRNA_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:15209..18174- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1017:15209..18174- >mRNA_Ecto-sp13_S_contig1017.199.1 ID=mRNA_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:15209..18174- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |