mRNA_Ecto-sp13_S_contig1017.198.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 932 bits (2409), Expect = 0.000e+0 Identity = 544/640 (85.00%), Postives = 566/640 (88.44%), Query Frame = 1 Query: 766 GPAKGESLDSWRARLRQQEQTAEPEDPTAENPAARTSSSAQGDEPGKPDGVTTEPISGSSREADKDHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLRETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------KILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSETMSDGLMPQDELRETLALHDELLRELGAENR 2631 GPAK ESLDSWRARLRQQEQ AE ED AENPAARTSSS QGD+PGKPD TT PISGSSREAD D M QAQISSFSALSTLCGG LEQVR+LVEALGINRSS GTGL ETGTL E++RLVAMA+DLG MVSRHVMNED QRRELALPPGP+AYYT++RTGLCNAYLAASVVCSSLVCTSKTGRMG AGKTLEFLSSAVPVVSGLAG AAAALKAGDRY QTRRVSKICDIAPDSTDCC+L R LALQLS+GYVDGTL TTDTAEER THTTAGMGGVEGGCGWSQD+ ASPD+ATEEAVMDWFVEEVADYEPN DARKTTPAVQAG+K+G RHLQTLLKAVGR CLRGTNTPD KVKVLVGIILPEAE +VGSTS G RER++ DASS QPASRQSHAAATRPAVPD A KSDIDVA LMERMASMRIRTEATHEELKAGLEASH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KILNK +MKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLER+Q+RAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDA LSRVQRAV KITRKSETMSDGL+PQDELRETLALHDELLRELGA+NR Sbjct: 554 GPAKDESLDSWRARLRQQEQAAEREDTKAENPAARTSSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNHDASSAQPASRQSHAAATRPAVPDGAPKSDIDVAALMERMASMRIRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAENARLNDVXXXXXXXXXXXXXXVKILNKMVMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERSQERAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDATLSRVQRAVCKITRKSETMSDGLVPQDELRETLALHDELLRELGAKNR 1193
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 883 bits (2281), Expect = 5.230e-305 Identity = 526/624 (84.29%), Postives = 557/624 (89.26%), Query Frame = 1 Query: 763 GGPAKGESLDSWRARLRQQEQTAEPEDPTAENPAARTSSSAQGDEPGKPDGVTTEPISGSSREADKDHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLRETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTER-VDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSETMSDGLMPQDELRETLALHDELLRELGAENR 2631 GGP +GESLDSWRARLRQQEQ A ED AENPAARTSSS QGD+PGK D TTEPISGSSREAD DHM QAQISSFSALSTLCGGS LEQVR+LVEAL INR S GTGL ETGTL E++RLVAMA+DLGDMVSRHVMNED QRRELALPPGP+AYYT++RTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAG AAAALKAGDRY QTRRVSKICDIAPDSTDCC+L R LALQLS+GYVDGTL TTDTAEER +H TAGMGGVEGGCGWSQD+ ASPD+ATEEAVMDWFVEEVADYEPN DARKTT AVQAG+K+GKRHLQTLLKAVGR CLRGTNTPD KVKVLVGIILPEAE +VGSTS RER + DASS QPASRQSHAAATRPAVPD AAKSDIDVA LMER+ASMR+RTEATHEELKAGLEASH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ILNKK+MKPGPDSDSLV SGGG AL+QRQAVTE +DDFLERAQ+RAPAAGNDVVTLGQLAEAVELLKEV SK+DELHREHDA L+R Q AV +ITRK +S+ L+PQ+ELRE LALHDELLRE A NR Sbjct: 341 GGPTRGESLDSWRARLRQQEQAAVREDTKAENPAARTSSSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERVASMRMRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQERAPAAGNDVVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQGAVDRITRKLAAVSNDLVPQNELREILALHDELLRERSAINR 961
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 874 bits (2257), Expect = 4.720e-301 Identity = 523/624 (83.81%), Postives = 552/624 (88.46%), Query Frame = 1 Query: 763 GGPAKGESLDSWRARLRQQEQTAEPEDPTAENPAARTSSSAQGDEPGKPDGVTTEPISGSSREADKDHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLRETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTER-VDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSETMSDGLMPQDELRETLALHDELLRELGAENR 2631 GGPAK ESLDSWRARLRQQEQ A ED AENPA RTSSS QGD+PGKPDG TTEPISGSSREAD DH+ QAQISSFS+LSTLCGGS A LEQV +LVEALGINRSS GTGL TGTL E++RLVAMA+DLGDMVSRHV NED QRRELALPPGP+AYYT++RTGLCNAYLAASVV SSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAG AAAALKAGDRY QTRRVSKICD+APDSTDCC+L R LALQLS+GYVDGTL T DTAEER THTTAGMGGVEG CGWSQD+ ASPD+ATEEAVMDWFVEEVADYEPNK DARKTT AVQAG+K+G RHLQTLLKAVGR CLRGTNTPD KVKVLVGIILPEAE KVGSTS G +ER + DASS QPASRQSHAAATRPA PD AAK+D+DVA LMERMASMRIRTEATHEELKAGLEASH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KILNKK+MKPGPDSDSLV S AL+QRQAVTE VDDFLERAQ+RAPAAGNDVVTLGQL EAVELLKEV SK+DELHREHDA LSR QRAV +ITRK S+ L+PQ+ELRE LALHDELLRE A NR Sbjct: 368 GGPAKDESLDSWRARLRQQEQAAVREDTKAENPAVRTSSSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQERTNHDASSAQPASRQSHAAATRPAAPDGAAKNDLDVAALMERMASMRIRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KILNKKVMKPGPDSDSLVAS----ALKQRQAVTETAVDDFLERAQERAPAAGNDVVTLGQLTEAVELLKEVHSKYDELHREHDAKLSRFQRAVDRITRKCTLESNDLVPQNELREILALHDELLRERSAINR 984
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 3.420e-134 Identity = 264/352 (75.00%), Postives = 286/352 (81.25%), Query Frame = 1 Query: 1612 GGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------KILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSETMSDGLMPQDELRETLALHDELLRELGAENR 2631 GG GWSQD+ ASPD+ATEEAVMDWFVEEVADYEPN D RKTTPAVQAG+K+GKRHLQ +LKAVGR CLRGTNT D KVKVLVGI+LPEA KVG TS G +ER + DASS QPASRQSHAAATRPAVPD AAKSDIDVA LMER+ASMRIRTEATHEELKAGLEA+ + XXXXXXXXXXXXXXXXXXXXXXX KILNKK+MK GPDSDSLVPSGGG AL+QRQAVTE VDDFLERAQ+RAPAA NDVVTLGQLAEAVELLK+ S+++ELHREHDA L R QRAV +ITRK +SD L+PQDELRE LALHDELLRE A+NR Sbjct: 41 GGGGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAVQAGRKLGKRHLQIILKAVGRDCLRGTNTADEKVKVLVGIVLPEAGRKVGLTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERIASMRIRTEATHEELKAGLEAAKEENARXXXXXXXXXXXXXXXXXXXXXXXSMHTVLPMSTFDASMLHAAAFGFQVKILNKKVMKIGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQERAPAADNDVVTLGQLAEAVELLKDEHSQYNELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNR 392
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.500e-93 Identity = 162/195 (83.08%), Postives = 169/195 (86.67%), Query Frame = 1 Query: 1168 SRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQ 1752 SRHV+NE QRRELALPPGP+AYY ++RTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTL+FLSSAVPVV GLAG AAAAL AGDRY QTRRVSKICDIAPDS CC L R LALQLS+GYVDG L TTDTAEER THTTAG GG WSQD+ ASPD ATEEAVMDWFVEEVADYEPN DARKTTPAVQ Sbjct: 8 SRHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAVQ 196
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: A0A6H5K7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE) HSP 1 Score: 295 bits (756), Expect = 2.070e-88 Identity = 218/275 (79.27%), Postives = 231/275 (84.00%), Query Frame = 1 Query: 1843 KVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------KILNKKMMKPGPDSDSLVPSGGGQALQQRQAV-TERVDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSETMSDGLMPQDELRETLALHDELLRELGAENR 2631 +VKVLVGIILPEAE KVG TS G +ER + DASS QPASRQSHAAATRPAVPD AAKSDIDVA LMERMASMRIRTEA HEELKAGLEASH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KI+NK + K GPDSDSLVPSGGG AL+QRQAV TE VDDFLERAQ+RAPAAGNDVVTLGQLAEAVE LKEV SK+DELHREHDA L R QRAV +ITRK +S+ L+PQDELRE LALHDELLRE A+NR Sbjct: 4 QVKVLVGIILPEAERKVGLTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERMASMRIRTEARHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVNKMVAKTGPDSDSLVPSGGGLALKQRQAVVTETVDDFLERAQERAPAAGNDVVTLGQLAEAVEPLKEVHSKYDELHREHDAKLGRFQRAVDRITRKLAAVSNDLVPQDELREMLALHDELLRERSADNR 278
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 281 bits (719), Expect = 5.460e-75 Identity = 210/549 (38.25%), Postives = 286/549 (52.09%), Query Frame = 1 Query: 763 GGPAKGESLDSWRARLR-QQEQTAEPEDPTAENPAARTSSSAQGDEPGKPDGVTTEPISGSSREADKDHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLR------ETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAPAA 2388 GGP G+ LDSWRAR++ QQ++ AE +DP E A+ S +Q E + D V P + E D H Q++SF+ L+ L G L+++++L+ A I R+ G+ + LR+++RL MA L ++ S H+ ++ Q RE L +AY+ +VR G+CNA+LA+SVV S+LV TSKTG +GTAGK L+ LS+AVP+V GL G A+AALK GDRY QTRRV KI DIA D+ +CC L R LA GG GWSQ A PD A + VM+WF +EVA+ EP A +TTP QAG+++GK+HLQTLL AVG G L G + + KV++LV +LPE E ST Q ++ SST RQ+ +AA+ DS VA LM + S+R+ L+ S+AKQ K+ +K PDSD +V GGGQAL QR VT++ + FLE +Q A AA Sbjct: 649 GGPEHGD-LDSWRARIQPQQQREAEHDDPKEEADVAQHSLRSQDAETVETDIVHPGPSCPAEEERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPI-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXX---------XXGGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPSSTDSVLRQTDSAASLLIGRDSVESDVSSVAALMGEIQSLRV-----------SLDDSNAKQSKLENEVSSL--------------------------------KEKVKSAPDSDGVVSIGGGQALMQRVVVTKKPETFLEESQHEAVAA 1143
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.280e-62 Identity = 230/635 (36.22%), Postives = 329/635 (51.81%), Query Frame = 1 Query: 724 MRCFMRRWLQTQCGGPAKGESLDSWRARLRQQEQTAEPEDPTAEN-----PAARTS-------SSAQGDE--------------PGKPDGVTTEPI------SGSSREADK-DHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLRETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAP-AAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKIT 2526 ++ F+RR + GGPAKGE LDSWR R+ + +T P+ T + PA RTS Q D P + V E + S S +A++ D M++AQ SS + L L +P LE ++ ++EA + L + + R + LV M+ LG++ +H + +R+ELALPP + YY++VR+GLC AYLAASV+ S+ V TSKTG MG G L+ +S AVP++ GL A AL+AGD Y QTRR+ KI +APD+ +CC L R LALQL++G + +T D + +TTAG G G + D P +EE V + +EEV YE N GK++GK+HL+ LLKA+ GCL G+N K+K+L+ ILPEA+ K +T +E + + PA +H DS S + A + +A+++ + EL+ A + XXXXXXXX XXXXXXXXXXXXXXX K L + + + + D V GG AL++R AV+E FL+RA+DRA AA + VT+ + E L +E HREH+A L ++ + K T Sbjct: 52 LKTFLRRGDKL-TGGPAKGEGLDSWRERMGRNPKTT-PQTLTGDKKEEDAPAPRTSPPPVLLPQQQQIDAXXXXXXXXXXXXXXPNSREVVVEERVRSPEHASLSPGKAEEVDPMVRAQFSSSAGLGPLIRENPEALEDIQRVIEATTVRSIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG------GSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERND----------HGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVM----VRSPPAGAAAH---------DSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXXLERKVKKLEEHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEAL-------QNEKHREHEARLRELEGQISKAT 648
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 239 bits (611), Expect = 3.490e-61 Identity = 200/603 (33.17%), Postives = 292/603 (48.42%), Query Frame = 1 Query: 763 GGPAKGESLDSWRARLR-QQEQTAEPEDPTAENPAARTSSSAQGDEPG-KPDGVTTEPISGSSREADKDHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLR------ETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTE---ATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKITRKSE 2538 GG G +LDSWRAR++ QQ++ AE ++P E A+ S +Q +E E D + Q++SF+ L+ L G L+++++L+ I R+ G+ + LR+++RL MA LG++ S H+ ++ Q RE L +AY+ +VR G+CNA+LA+SVV S+LV TSKTG +GTAGK L LS+AVP+V GL G AA ALK GDRY QTRRV+KI DIA D+ +CC L R LA GW Q A PD A E+ VM+WF +EV+++EP A + TP QAG ++GK+HLQTLL AVG GCL G N + KV++LV + PE E ST + ++ S + + + A+ DS +A LME M S+ + + A H +L+ + KI+ K +K PDSD ++ G GQAL+QR + + FLE ++ A A V+ + +E + + E++R HD R+ R K+ RK + Sbjct: 675 GGSEHG-NLDSWRARIQPQQQREAEHDEPKEEADVAQHSPRSQDEEETVXXXXXXXXXXXXXXXERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPI-RAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXX---------XXXXXGWRQGEYALPDGAGEKDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVSTPRAPNVLLEQVPSPIDSVLKPTDSPASPLVGRDSPEIDASTIAALMEEMRSLWVSLKDWNAKHSDLENEVS--------------------------------------------KIMEK--VKSLPDSDGVLSIGEGQALKQR-VYDKTPEKFLEASEHEAVALDQPVLA--------HVWRESMVRQAEINRGHD---DRIDRLEGKVARKQD 1208
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 234 bits (597), Expect = 1.250e-60 Identity = 223/621 (35.91%), Postives = 311/621 (50.08%), Query Frame = 1 Query: 763 GGPAKGESLDSWRARLR-------------------------------QQEQTAEPEDPTAENPAARTSSSAQGDEPGKPDGVTTEPISGSSREADK-DHMIQAQISSFSALSTLCGGSPACLEQVRELVEALGINRSSLGTGLRETGTLREMDRLVAMAQDLGDMVSRHVMNEDKQRRELALPPGPRAYYTSVRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGFAAAALKAGDRYRQTRRVSKICDIAPDSTDCCVLVRMLALQLSEGYVDGTLSTTDTAEERSTHTTAGMGGVEGGCGWSQDVDASPDAATEEAVMDWFVEEVADYEPNKPDARKTTPAVQAGKKVGKRHLQTLLKAVGRGCLRGTNTPDAKVKVLVGIILPEAELKVGSTSQGARERIDDDASSTQPASRQSHAAATRPAVPDSAAKSDIDVAVLMERMASMRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKMMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERAQDRAP-AAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDAILSRVQRAVYKIT 2526 GGP GE LDSWR R+R Q+Q + D T E+ S Q E +T S S +A++ D + +AQ+ S + L +L +PA LE ++ +E L + + R + LV M+ LG++ RH + + QR+ELALPP +AYYT++RTGLC AYLAAS + S V TSKTG MG G L+ +SSAVP++ GL A AL+AGD Y QTRR+ KI +APD+ +CC L R LALQL++G + +T D + +TTAG G G + D P +EE V + +EEV E N GK++GKRHL+ LLKA+ GCL G+N K+K+L+ ILPEA+ K +T +E + + PA +H DS S + A + +A+++ + EL+ A + XXXXXXXX XXXXXXXXXXXXXX K L + + + + D V GG AL++R AV+E FL+RA+DRA A + VT+ + E L DE HREH+A L ++ + K T Sbjct: 259 GGPRDGEGLDSWRTRVRFEQRTKPRTLKGDQRGKDAPVPPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG------GSGCGRGADMMPGDMSEEDVFKYLLEEVTADERND----------HGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVM----VRSPPAGAAAH---------DSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXELERKVKKLEQHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEAL-------QDEKHREHEARLRELEGQIIKAT 843 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1017.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1017.198.1 >prot_Ecto-sp13_S_contig1017.198.1 ID=prot_Ecto-sp13_S_contig1017.198.1|Name=mRNA_Ecto-sp13_S_contig1017.198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=647bp MYQVVYRWRPMRCFMRRWLQTQCGGPAKGESLDSWRARLRQQEQTAEPEDback to top mRNA from alignment at Ecto-sp13_S_contig1017:5234..14186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1017.198.1 ID=mRNA_Ecto-sp13_S_contig1017.198.1|Name=mRNA_Ecto-sp13_S_contig1017.198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:5234..14186+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1017:5234..14186+ >mRNA_Ecto-sp13_S_contig1017.198.1 ID=mRNA_Ecto-sp13_S_contig1017.198.1|Name=mRNA_Ecto-sp13_S_contig1017.198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:5234..14186+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |