mRNA_Ecto-sp13_S_contig10169.197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI) HSP 1 Score: 267 bits (683), Expect = 1.130e-80 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 396 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA Sbjct: 1164 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 1295
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.160e-73 Identity = 109/132 (82.58%), Postives = 124/132 (93.94%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 396 GGNA+LSLD+ EEPY GG+K+N MPPMKRFRDM+QLSGGEKTVAAL LLFAIHS+RPAPFFVMDE+DAALDN+NVKKVCNYI+ RSGDFQ IVISLKDMFYE+AD+LVGICRD +TNSSRTLTLDLE+ G++ Sbjct: 183 GGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIHSYRPAPFFVMDEVDAALDNVNVKKVCNYIKQRSGDFQCIVISLKDMFYEQADSLVGICRDVSTNSSRTLTLDLESFGDS 314
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2CTE2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTE2_9STRA) HSP 1 Score: 223 bits (568), Expect = 1.330e-72 Identity = 107/131 (81.68%), Postives = 119/131 (90.84%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGE 393 GGNA+LSLD+ EEPYLGG+K+NAMPPMKRFRDMEQLSGGEKTVAAL LF+IHSFRPAPFFVMDE+DAALDN+NVKKVCNYI+ RS +FQ IVISLKD+FYE+AD+LVGICRD TNSSRTLTLDL E Sbjct: 33 GGNAYLSLDDTEEPYLGGIKYNAMPPMKRFRDMEQLSGGEKTVAALAFLFSIHSFRPAPFFVMDEVDAALDNVNVKKVCNYIKQRSHEFQCIVISLKDIFYEQADSLVGICRDAGTNSSRTLTLDLSQFDE 163
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA) HSP 1 Score: 221 bits (562), Expect = 1.060e-71 Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRS--GDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GGNA+LSLD+ EEP+ GGVKFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDE+DAALDNINVKKVCNYI+ RS G QSIVISLKDMFYEKAD+LVGICRD TNSSRTLTLDL Sbjct: 37 GGNAYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEVDAALDNINVKKVCNYIRQRSTDGGCQSIVISLKDMFYEKADSLVGICRDVGTNSSRTLTLDL 164
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2E6E8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E8_9STRA) HSP 1 Score: 221 bits (563), Expect = 2.590e-71 Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GGNA+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDE+DAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++ +L+GICRD TNSSRT+TLDL Sbjct: 45 GGNAYLSLDDAEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEVDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSHSLIGICRDVGTNSSRTMTLDL 170
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2SBG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBG7_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.790e-70 Identity = 108/126 (85.71%), Postives = 118/126 (93.65%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GG AFLSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++++L+GICRD ATNSS+TLTLDL Sbjct: 142 GGKAFLSLDDSEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSNSLIGICRDVATNSSKTLTLDL 267
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK) HSP 1 Score: 221 bits (564), Expect = 1.850e-69 Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GG A+L+LD+PEEPYL GVKFNAMPPMKRFRDMEQLSGGE+TVA+L LLF++HSFRPAPFFVMDEIDAALDNINVKKVCNYI+ RSGD QSIVISLKDMFYE+AD+LVG+CRD AT SR+LTLDL Sbjct: 229 GGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVHSFRPAPFFVMDEIDAALDNINVKKVCNYIKRRSGDCQSIVISLKDMFYERADSLVGVCRDRATMGSRSLTLDL 354
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: K0R031_THAOC (SMC_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R031_THAOC) HSP 1 Score: 219 bits (558), Expect = 1.490e-66 Identity = 104/126 (82.54%), Postives = 118/126 (93.65%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GGNA+LSLD+ +EPYL G+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFF+MDE+DAALDN+NV KVCNYIQ RS DFQ IVISLKDMFYE++++LVGICRD ++NSSRT+TLDL Sbjct: 383 GGNAYLSLDDTDEPYLSGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFIMDEVDAALDNVNVLKVCNYIQQRSSDFQCIVISLKDMFYERSESLVGICRDVSSNSSRTMTLDL 508
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A6T7JRG2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JRG2_9STRA) HSP 1 Score: 225 bits (574), Expect = 8.350e-66 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GGNA+LSLD+ EEPYLGG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++ +LVGICRD TNSSRTLTLDL Sbjct: 1148 GGNAYLSLDDTEEPYLGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSQSLVGICRDVGTNSSRTLTLDL 1273
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR) HSP 1 Score: 206 bits (525), Expect = 1.200e-65 Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 1 Query: 1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSG-DFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378 GGNA+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSF PAPFF+MDEIDAALDN+N++KVCNYI+ RS DFQ IVISLKDMFYE + LVGI RD TNSS TLTLDL Sbjct: 71 GGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFHPAPFFIMDEIDAALDNVNLRKVCNYIKQRSQTDFQCIVISLKDMFYEHSQGLVGIYRDVGTNSSHTLTLDL 197 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10169.197.1 >prot_Ecto-sp13_S_contig10169.197.1 ID=prot_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFback to top mRNA from alignment at Ecto-sp13_S_contig10169:4787..5968- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10169.197.1 ID=mRNA_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:4787..5968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10169:4787..5968- >mRNA_Ecto-sp13_S_contig10169.197.1 ID=mRNA_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:4787..5968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |