mRNA_Ecto-sp13_S_contig10169.196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Match: D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI) HSP 1 Score: 351 bits (900), Expect = 1.120e-118 Identity = 192/236 (81.36%), Postives = 206/236 (87.29%), Query Frame = 1 Query: 256 MPLAVLAGHSTLVSIKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLADEDHISIFGTPLVASGETGYIPAAATAASAFSISTKTDDVKALVAEVHASVEQGDAEALRKVLSSRCQQHPGEEVEDDGEDADGDSAQTGETQPKTLLVPVDSACPRTGMSPLLKAVEGGSAEVIRVLLDAGADVRMQAS 963
MPLAVLAGH TLVS+KGIVFDVSDDEAYNHEGALAGCAGHDASRVI A AG R G GDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVL DED+ISIFGTPLVASG+TGY PAAAT ASA +I+T+T++VKALVA +HASVEQGDAEA+R VLSSR QQ PGEEVED G DADGDSAQ ETQPK+LLVPVDSACPRTGMSPLLKAVEGGSA+ D D+ + S
Sbjct: 1 MPLAVLAGHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIGASAGSRRGYGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLTDEDYISIFGTPLVASGDTGYTPAAATTASALAINTQTNNVKALVAVLHASVEQGDAEAVRNVLSSRYQQPPGEEVEDAGGDADGDSAQIEETQPKSLLVPVDSACPRTGMSPLLKAVEGGSAKAALYDGDTALDLARRLS 236
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Match: A0A7S2RSP5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSP5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.520e-11 Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 157 KAAAITCPLGFGGGAN------DTGRPTAASFAKRGLPRMPLAVLAGHS-------TLVSIKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLADEDHISIFG 570
KA A TCPLGFGGG++ + A + LP M LA L H+ VS+KG VFDV+ D+ L+ C G D SR++A +G+ D L+ L GL YE+HQRLEA++ + + VA L+ E++ +FG
Sbjct: 64 KAEAPTCPLGFGGGSSAQXXXXXXXXXXGQAQAHQELPEMSLAALGRHNGKIPRMPKFVSVKGSVFDVTQDKESFGVPPLSDCCGSDVSRILA------VGSFDPN-LLNQSLAGLTYEQHQRLEAFYHMFSGRFKPVARLSAENYEQLFG 207 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10169.196.1 >prot_Ecto-sp13_S_contig10169.196.1 ID=prot_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp MSGGTCPFAAQWQRSQPTGTTAPTCPVGSGSPPPHPTTGASSSATATATAback to top mRNA from alignment at Ecto-sp13_S_contig10169:1755..3202+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10169.196.1 ID=mRNA_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:1755..3202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10169:1755..3202+ >mRNA_Ecto-sp13_S_contig10169.196.1 ID=mRNA_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:1755..3202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |